prot_M-pyrifera_M_contig65257.15875.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig65257.15875.1
Unique Nameprot_M-pyrifera_M_contig65257.15875.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length156
Homology
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: A0A813B0I3_9DINO (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B0I3_9DINO)

HSP 1 Score: 142 bits (357), Expect = 2.200e-40
Identity = 65/144 (45.14%), Postives = 99/144 (68.75%), Query Frame = 0
Query:    8 GEAASRLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTADGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKKG 151
            G+  + L +D   V  VNPDGKKFDKV+R++ KS    +D+ +D+A+E +P++KDEK  M+L +TLR DGKP++     +  +S LD +EYGM GK+FK +H  D  V +  S+GGLL++++G+ EHLK L LD R++ L ++ 
Sbjct:    5 GDTPAELLNDIFTVTAVNPDGKKFDKVNRLICKSETYGIDMSIDIASEVYPLKKDEKFAMVLRSTLRLDGKPDDGTYDQSTKESALDAFEYGMSGKIFKYDHAEDARVSIYASYGGLLMLVQGKAEHLKALKLDSRVYCLMRRA 148          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: A0A7S1CMR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMR6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.000e-35
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = 0
Query:    9 EAASRLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEE-EWDATAKADSLLDDYEYGMHGKVFKVEHTADGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            E ++ LF D   V  VNPDGKKFD+V R+V K    DV + +DVA+E FPV+  EKL + + +TLR DG+P++  +      +SLLD Y+YGMHG+VFK ++  D  V V  SFGGLL+++ G+ + L  LSLDQR++ L ++
Sbjct:    3 ERSATLFHDIFTVDDVNPDGKKFDRVSRLVCKGETWDVLLKIDVASEVFPVKAGEKLAVAVVSTLRLDGEPDDGTYQHNEGEESLLDQYDYGMHGRVFKYDYEEDDRVSVYASFGGLLMLLHGQQDSLSSLSLDQRVYCLIRR 145          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: UPI001F5C91F5 (DNA-directed RNA polymerases II and V subunit 8A-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C91F5)

HSP 1 Score: 121 bits (304), Expect = 1.900e-32
Identity = 66/144 (45.83%), Postives = 91/144 (63.19%), Query Frame = 0
Query:   11 ASRLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKV-EHTADGL---VGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            A  LF DT +VL ++PDGKKFD+V+RI  KS + D+ + LDVA + +P+   EK  M+L  TL  DG P+  +   A   +L D Y+Y MHGK++K+ E T  G    V +  SFGGLL+++KG P     L LDQR+FLL +K
Sbjct:    2 AEHLFEDTFEVLRIDPDGKKFDRVNRIEAKSEQSDMYMQLDVATDIYPMSTGEKFTMVLAPTLNLDGTPDTGFYTQAGRKTLADKYDYVMHGKLYKISEETKAGQLPKVEIYASFGGLLMLLKGDPSSAANLELDQRLFLLMRK 145          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: M5WHF7_PRUPE (Uncharacterized protein n=6 Tax=Prunus TaxID=3754 RepID=M5WHF7_PRUPE)

HSP 1 Score: 123 bits (308), Expect = 2.960e-32
Identity = 65/146 (44.52%), Postives = 88/146 (60.27%), Query Frame = 0
Query:    7 DGEAASRLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTA--DGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            D     RLF D   +L +NPDGKKFDKV RI  KS  C++ + LDV +E +P+R+ EK  M LT+T+  DG P+  +       +L D+YEY M GK+FK+   +  D    V  SFGGLL+++KG     K   LDQR+FLL +K
Sbjct:   66 DARMVDRLFEDIFQILRLNPDGKKFDKVTRIEAKSETCEMFMHLDVNSEVYPMREGEKFSMALTSTINLDGTPDTGYFTQGNRKTLADEYEYVMQGKLFKISEGSKRDPKAEVNASFGGLLMMLKGEASQFKNFELDQRMFLLIRK 211          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: A0A2P6PRJ6_ROSCH (Putative RNA polymerase, Rpb8 n=6 Tax=Rosaceae TaxID=3745 RepID=A0A2P6PRJ6_ROSCH)

HSP 1 Score: 120 bits (300), Expect = 7.200e-32
Identity = 63/140 (45.00%), Postives = 87/140 (62.14%), Query Frame = 0
Query:   13 RLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTA--DGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            RLF D   VL +NPDGKKFDKV R+  KS  C++ + LDV +E +P+++ EK  M LT+TL  DG P+  +       +L D+YEY M GK++K+   +  D    V  SFGGLL+++KG     K   LDQR+FLL +K
Sbjct:    4 RLFEDIFQVLLLNPDGKKFDKVTRVEAKSEACEMFMHLDVNSEVYPIKEGEKFSMALTSTLNLDGTPDTGYFTPGNRKTLADEYEYVMQGKLYKISEGSKRDPKAEVNASFGGLLMMLKGESAQFKNFELDQRLFLLIRK 143          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 118 bits (295), Expect = 3.870e-31
Identity = 59/140 (42.14%), Postives = 89/140 (63.57%), Query Frame = 0
Query:   11 ASRLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTADGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            AS LF D  +V  VNPDGKKFDKV R+V K    ++++ LD+ +E + +R++EK    L +TL  +GKP++     +   +LLD Y+YGM+GKVF+ +H    +V +  SFGGLL+ ++G   HL  +  D RI+ L +K
Sbjct:    2 ASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: A0A498KBQ5_MALDO (Uncharacterized protein n=3 Tax=Amygdaloideae TaxID=171637 RepID=A0A498KBQ5_MALDO)

HSP 1 Score: 117 bits (294), Expect = 5.810e-31
Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = 0
Query:   13 RLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTA--DGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            RLF D   +L +NPDGKKFDKV R+  KS  C++ + LDV +E +P+R+ EK  M LT+T+  DG P+  +       +L D+YEY M GK+FK+   +  D    V  SFGGLL+++K      K   LDQR+FLL +K
Sbjct:    4 RLFEDIFQILRLNPDGKKFDKVTRVEAKSETCEMFMHLDVNSEVYPMREGEKFSMALTSTINLDGTPDTGYFTQGNRRTLADEYEYVMQGKLFKISEGSKRDPKAEVNASFGGLLMMLKREASQFKNFELDQRMFLLIRK 143          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: A0A7N0V1U2_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V1U2_KALFE)

HSP 1 Score: 117 bits (293), Expect = 8.000e-31
Identity = 64/140 (45.71%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   14 LFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTADG---LVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            LF D   V  +NPDGKKFD+VDRIV KS   ++ + LDV  E +P++  EK  + L TTL  DG P+  +       SL D+YEY MHGK++KV            + VSFGGLL++MKG P    +  LDQR+FLL +K
Sbjct:    3 LFEDIFRVEDLNPDGKKFDRVDRIVAKSERSEMYMQLDVNTEIYPIKVGEKFSIALATTLSTDGTPDTGYYTQGGRHSLADNYEYVMHGKLYKVSEEGSHPNIRAEIYVSFGGLLMLMKGDPTTFNQFQLDQRLFLLMRK 142          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: A0A1U8AYQ9_NELNU (DNA-directed RNA polymerases II and V subunit 8A-like n=13 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8AYQ9_NELNU)

HSP 1 Score: 116 bits (291), Expect = 1.700e-30
Identity = 61/140 (43.57%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   14 LFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTADGL---VGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            LF D   V  ++PDGKKFDKV RIV  S + D+ + LDV  E +P+R D+K  M+L  TL  DG P+  +       SL D +EY MHGK++K+     G    V +  S+GGLL+++KG P +     LDQR+FLL +K
Sbjct:    5 LFEDIFTVKQIDPDGKKFDKVSRIVATSEQFDMYMQLDVNTEIYPLRVDDKFTMVLAPTLSLDGTPDSGYYTQVGRKSLADKFEYVMHGKLYKISEEGSGANVKVEIYASYGGLLMLLKGDPSNAANFELDQRLFLLMRK 144          
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Match: UPI000D1C2ECB (DNA-directed RNA polymerases II and V subunit 8A n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C2ECB)

HSP 1 Score: 119 bits (298), Expect = 1.980e-30
Identity = 60/140 (42.86%), Postives = 92/140 (65.71%), Query Frame = 0
Query:   14 LFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVMLDVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGMHGKVFKVEHTADG---LVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK 150
            LF D   + G++ DGKKFDKV RI  +S + D+ ++LDV  + +P+ + +K  + L++TLR DG P++     ++  SL D YEY M+GK++K +    G    +GV VSFGGLL+++KG  +HL  L LDQR++LL +K
Sbjct:  102 LFEDIFTITGIDTDGKKFDKVSRIEARSEQFDMQLVLDVNIDVYPIARTDKFTLALSSTLRLDGTPDDGVFDQSRKKSLADKYEYVMYGKLYKYDDDESGGAIKIGVYVSFGGLLMMLKGDKQHLGNLKLDQRLYLLMRK 241          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65257.15875.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813B0I3_9DINO2.200e-4045.14DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1CMR6_9STRA1.000e-3546.85Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
UPI001F5C91F51.900e-3245.83DNA-directed RNA polymerases II and V subunit 8A-l... [more]
M5WHF7_PRUPE2.960e-3244.52Uncharacterized protein n=6 Tax=Prunus TaxID=3754 ... [more]
A0A2P6PRJ6_ROSCH7.200e-3245.00Putative RNA polymerase, Rpb8 n=6 Tax=Rosaceae Tax... [more]
K3X3H5_GLOUD3.870e-3142.14DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A498KBQ5_MALDO5.810e-3144.29Uncharacterized protein n=3 Tax=Amygdaloideae TaxI... [more]
A0A7N0V1U2_KALFE8.000e-3145.71Uncharacterized protein n=2 Tax=Kalanchoe fedtsche... [more]
A0A1U8AYQ9_NELNU1.700e-3043.57DNA-directed RNA polymerases II and V subunit 8A-l... [more]
UPI000D1C2ECB1.980e-3042.86DNA-directed RNA polymerases II and V subunit 8A n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 11..150
e-value: 4.7E-37
score: 139.1
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 9..151
e-value: 1.3E-38
score: 130.3
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 17..150
e-value: 8.5E-39
score: 132.9
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 12..150
NoneNo IPR availableGENE3D2.40.50.140coord: 15..152
e-value: 3.2E-40
score: 139.3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..128
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..109
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 13..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65257contigM-pyrifera_M_contig65257:163..1085 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65257.15875.1mRNA_M-pyrifera_M_contig65257.15875.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig65257 163..1085 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig65257.15875.1 ID=prot_M-pyrifera_M_contig65257.15875.1|Name=mRNA_M-pyrifera_M_contig65257.15875.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
MAFGGLDGEAASRLFSDTIDVLGVNPDGKKFDKVDRIVGKSHECDVDVML
DVANEPFPVRKDEKLVMLLTTTLRRDGKPEEEWDATAKADSLLDDYEYGM
HGKVFKVEHTADGLVGVLVSFGGLLLVMKGRPEHLKKLSLDQRIFLLAKK
GIGVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold