prot_M-pyrifera_M_contig65102.15850.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig65102.15850.1
Unique Nameprot_M-pyrifera_M_contig65102.15850.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length170
Homology
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A7Y2IK45_9ACTN (Ribosome maturation factor RimP n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IK45_9ACTN)

HSP 1 Score: 156 bits (394), Expect = 2.060e-45
Identity = 84/166 (50.60%), Postives = 114/166 (68.67%), Query Frame = 0
Query:    2 SVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQ-----EGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGN-EPRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPK 161
            ++ D VT L++  VE LGV+L+DVE+ G +LR+ VD      EGG+ T  L  VNR +  IL++ DP+PGRYTLEVSSPGVER+L R  HYTRA+GE V+VK++PG  E RR+KG L+G + +    TV   E DG DL + E   I+  D+ +++T+F WGPTPK
Sbjct:    5 ALEDRVTALITVPVERLGVDLVDVEFTGGTLRISVDTPHEPLEGGVDTATLTNVNRAIGAILEEDDPIPGRYTLEVSSPGVERRLNRPDHYTRAIGEMVVVKMKPGTGEVRRVKGTLTGVEPDG--FTVLVAERDGNDLSEPEPVTISYDDVDRTKTIFVWGPTPK 168          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A6B1H8U1_9ACTN (Ribosome maturation factor RimP n=3 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1H8U1_9ACTN)

HSP 1 Score: 135 bits (340), Expect = 1.680e-37
Identity = 73/163 (44.79%), Postives = 112/163 (68.71%), Query Frame = 0
Query:    1 MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNE-PRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPKK 162
            MSV+D V +LL+P+ +  G+E+ D+ + G  LR++VD+ GG++ + +A+ +++ S +LD +D VPGRYTLE++SPG+ER L R  HY RA+GE++ VKL P  E  RR++G+L G D +   +T+E    DGV        + + +DI K+RTVF+WGP PKK
Sbjct:    1 MSVADNVHDLLAPLFQGRGLEVYDLTYGGGVLRIIVDKPGGVSLDEVADASKVASRLLDDNDLVPGRYTLEMTSPGLERPLRRPEHYARAIGEEISVKLGPQVEGQRRIQGVLMGCDDDG--ITIEE---DGV------PRRFSFSDITKARTVFEWGPEPKK 152          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A7K2CR82_9ACTN (Ribosome maturation factor RimP n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2CR82_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 9.760e-36
Identity = 71/163 (43.56%), Postives = 109/163 (66.87%), Query Frame = 0
Query:    1 MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNE-PRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPKK 162
            MSV+D+V +LL+P+ +  G+E+ D+ + G  LR++VD+ GG++ + +A+ +R+ S +LD +D VPGRYTLE++SPG+ER L    HY RAVGE + VKL P  E  RR++GLL   D        + + I+   +P    H+++  DI K++TVF+WGP PKK
Sbjct:   21 MSVADSVRDLLTPLFQGRGLEVYDLTYGGGVLRIIVDKSGGVSLDEVADASRVASRLLDDNDLVPGRYTLEITSPGLERPLRCPEHYARAVGETISVKLGPHVEGQRRIQGLLMECDD-------DGITIENNGVP----HRMSFNDITKAKTVFEWGPMPKK 172          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A538HJW3_9ACTN (Ribosome maturation factor RimP n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HJW3_9ACTN)

HSP 1 Score: 130 bits (328), Expect = 1.600e-35
Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 0
Query:    1 MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNEPRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWG 157
            +SV++ V EL+ P++   G+ L DVE  GS+LRV VD++GG+  + LAE  R++S  LD+ DPVPGRYTLEVSSPG+ER L    H+  +VG DV VK  PG+E RRL+G L   D E  V               V   +I  ADI ++RT F WG
Sbjct:   19 LSVTEHVRELVEPLLAGAGLRLWDVEHAGSTLRVTVDRDGGVDLDALAEATRVVSGALDRADPVPGRYTLEVSSPGLERSLRTPAHFRHSVGADVTVKTTPGSEERRLEGRLEAADDEGVV---------------VAGRRIPYADIERARTTFTWG 160          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A7K2E9J7_9ACTN (Ribosome maturation factor RimP n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E9J7_9ACTN)

HSP 1 Score: 128 bits (321), Expect = 1.360e-34
Identity = 74/163 (45.40%), Postives = 102/163 (62.58%), Query Frame = 0
Query:    1 MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNE-PRRLKGLLSGFDTESEVLTVEAVEIDGVDL--PDVETHQIALADIAKSRTVFKWGPTP 160
            M+++D V EL++P+ E + V+L DVE  G  +R++VD +GG+  + +A ++R +S  LD+HDP+PGRYTLEVSSPG+ER L    H+  A G  V VK   G + PRRL G+L            EAV  DGVDL   D E  +IA   +A +RTVF+WG  P
Sbjct:    1 MAIADRVRELVAPLAEAVSVDLYDVEHHGGVVRILVDADGGVDLDAIARLSRSISRALDEHDPIPGRYTLEVSSPGLERPLRTHEHFRSAAGSTVKVKTLAGFDGPRRLTGIL------------EAVTGDGVDLRRTDGEVFRIAYEQLASARTVFEWGSRP 151          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A7K2A3G8_9ACTN (Ribosome maturation factor RimP n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2A3G8_9ACTN)

HSP 1 Score: 128 bits (321), Expect = 1.770e-34
Identity = 76/163 (46.63%), Postives = 103/163 (63.19%), Query Frame = 0
Query:    1 MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNE-PRRLKGLLSGFDTESEVLTVEAVEIDGVDL--PDVETHQIALADIAKSRTVFKWGPTP 160
            M+++D V EL++P+ E + V+L DVE  G  +RV+VD +GGI  + +A ++R +S  LD+HD +PGRYTLEVSSPG+ER L    H+ RA G  V VK   G + PRRL G            T+EAV  DGVDL  P+ E  +IA   +A +RTVF+WG  P
Sbjct:    6 MAIADRVRELVAPLAEAVSVDLYDVEHHGGVVRVLVDADGGIDLDVIARLSRSISRALDEHDLIPGRYTLEVSSPGLERPLRTPEHFRRAAGSTVKVKTLAGFDGPRRLTG------------TLEAVADDGVDLRSPEGEVCRIAYEQLASARTVFEWGSRP 156          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A6N7FPZ4_9ACTN (Ribosome maturation factor RimP n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FPZ4_9ACTN)

HSP 1 Score: 130 bits (326), Expect = 1.150e-33
Identity = 74/160 (46.25%), Postives = 100/160 (62.50%), Query Frame = 0
Query:    5 DTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNE-PRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPKKG 163
            D VTE++SPVV +LGVEL+DVE +G  +R+VVD+ GGI  +R+AEV R  S  LD  DP+PG YTLEVSSPG+ER L    H+ RAVG+ V V+  P  E  RR+ G L   + E  V+  +A ++            +   ++ ++RTVF WGP PK G
Sbjct:  141 DAVTEVVSPVVASLGVELVDVEHLGGVVRLVVDEPGGIGLDRVAEVTRAASRALDLADPLPGTYTLEVSSPGLERPLRSPAHFARAVGQKVNVRARPSFEGDRRVTGTLMAAEAEQLVVRTDAGDV-----------AVPYDEVDRARTVFDWGPPPKPG 289          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A2A5YXD1_9ACTN (Ribosome maturation factor RimP n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A2A5YXD1_9ACTN)

HSP 1 Score: 126 bits (316), Expect = 1.160e-33
Identity = 68/160 (42.50%), Postives = 102/160 (63.75%), Query Frame = 0
Query:    5 DTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNEPRR-LKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPKKG 163
            D +  LL PVVE  G  L D+   G +L V+VD + G+  + L+E++R +S +LD+HDP+PGRYTLEVSSPGVER+L    H+T A+GE V V+  PG + RR + G L      + +LT+++         D+   ++ + ++ K+RTVF+WGP+PK G
Sbjct:   10 DPIFSLLQPVVEASGHSLYDIHQKGGTLAVLVDSDDGLGVDDLSELSRAVSVVLDEHDPIPGRYTLEVSSPGVERRLRDEDHFTGAIGEIVNVRTNPGPDGRRRVVGTL--LSVSNGLLTIDS--------SDIGATEVHMTEVEKARTVFEWGPSPKPG 159          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: A0A7W2CDM8_9ACTN (Ribosome maturation factor RimP n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A7W2CDM8_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 1.640e-33
Identity = 70/155 (45.16%), Postives = 99/155 (63.87%), Query Frame = 0
Query:   10 LLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPGNEPRR-LKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPKKG 163
            L+ P+VE  G +L D+   G +L V+VD E G+  + L+ ++R LS  LD+HDP+PGRYTLE+S+PGVER+L +  H+  AVGE V ++  PG E RR + G+L     E  VLT+E  ++D   +P        L +I K+RTVF+WGP PK G
Sbjct:   15 LVEPLVEAAGHDLYDIHQNGGTLAVLVDSEEGLGVDDLSGLSRSLSAALDEHDPIPGRYTLEISTPGVERRLRQEKHFVGAVGETVNIRTNPGPEGRRRVVGVLVAV--EDGVLTIETSDLDASKVP--------LTEIEKARTVFEWGPAPKPG 159          
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Match: UPI001E2BE8BA (ribosome maturation factor RimP n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E2BE8BA)

HSP 1 Score: 126 bits (316), Expect = 2.510e-33
Identity = 77/165 (46.67%), Postives = 94/165 (56.97%), Query Frame = 0
Query:    1 MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEVNRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLEPG-NEPRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKSRTVFKWGPTPKKGG 164
            MSVS+ V  ++ PVV    VEL D+E  G  LRV VD+ GG+    +A V R LS  LD+HDP+ G+YTLEVSSPG+ER L    HY  AVG  V VK  PG    RR  G L+  D    V+ +        D P  E  ++   DI K+RTVF WGP PK GG
Sbjct:    1 MSVSERVRAVVEPVVAAEDVELFDLEQAGPVLRVTVDRPGGLDMQAIASVTRALSRALDEHDPINGQYTLEVSSPGLERTLRTPGHYAWAVGRQVSVKTVPGFARGRRFAGTLASADATGVVVAL--------DEPAGEQIRLDYPDIEKARTVFDWGPAPKPGG 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig65102.15850.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2IK45_9ACTN2.060e-4550.60Ribosome maturation factor RimP n=1 Tax=Acidimicro... [more]
A0A6B1H8U1_9ACTN1.680e-3744.79Ribosome maturation factor RimP n=3 Tax=Acidimicro... [more]
A0A7K2CR82_9ACTN9.760e-3643.56Ribosome maturation factor RimP n=1 Tax=Acidimicro... [more]
A0A538HJW3_9ACTN1.600e-3546.50Ribosome maturation factor RimP n=1 Tax=Actinomyce... [more]
A0A7K2E9J7_9ACTN1.360e-3445.40Ribosome maturation factor RimP n=1 Tax=Acidimicro... [more]
A0A7K2A3G8_9ACTN1.770e-3446.63Ribosome maturation factor RimP n=6 Tax=Acidimicro... [more]
A0A6N7FPZ4_9ACTN1.150e-3346.25Ribosome maturation factor RimP n=1 Tax=Acidimicro... [more]
A0A2A5YXD1_9ACTN1.160e-3342.50Ribosome maturation factor RimP n=4 Tax=Acidimicro... [more]
A0A7W2CDM8_9ACTN1.640e-3345.16Ribosome maturation factor RimP n=3 Tax=Actinobact... [more]
UPI001E2BE8BA2.510e-3346.67ribosome maturation factor RimP n=1 Tax=Rhabdother... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028998Ribosome maturation factor RimP, C-terminalPFAMPF17384DUF150_Ccoord: 81..156
e-value: 5.4E-9
score: 36.1
IPR035956RimP, N-terminal domain superfamilyGENE3D3.30.300.70coord: 1..75
e-value: 1.2E-19
score: 72.3
IPR035956RimP, N-terminal domain superfamilySUPERFAMILY75420YhbC-like, N-terminal domaincoord: 3..78
IPR028989Ribosome maturation factor RimP, N-terminalPFAMPF02576DUF150coord: 10..78
e-value: 5.1E-20
score: 71.7
IPR003728Ribosome maturation factor RimPPANTHERPTHR33867FAMILY NOT NAMEDcoord: 1..156
IPR003728Ribosome maturation factor RimPHAMAPMF_01077RimPcoord: 5..156
score: 21.11
IPR036847Ribosome maturation factor RimP, C-terminal domain superfamilySUPERFAMILY74942YhbC-like, C-terminal domaincoord: 79..156

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig65102contigM-pyrifera_M_contig65102:795..1304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig65102.15850.1mRNA_M-pyrifera_M_contig65102.15850.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig65102 795..1304 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig65102.15850.1 ID=prot_M-pyrifera_M_contig65102.15850.1|Name=mRNA_M-pyrifera_M_contig65102.15850.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MSVSDTVTELLSPVVETLGVELIDVEWVGSSLRVVVDQEGGITTNRLAEV
NRLLSPILDQHDPVPGRYTLEVSSPGVERKLTRAPHYTRAVGEDVIVKLE
PGNEPRRLKGLLSGFDTESEVLTVEAVEIDGVDLPDVETHQIALADIAKS
RTVFKWGPTPKKGGKPGSKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028998RimP_C
IPR035956RimP_N_sf
IPR028989RimP_N
IPR003728Ribosome_maturation_RimP
IPR036847RimP_C_sf