prot_M-pyrifera_M_contig6467.15786.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig6467.15786.1
Unique Name	prot_M-pyrifera_M_contig6467.15786.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	111

Homology

[Close]

BLAST of mRNA_M-pyrifera_M_contig6467.15786.1 vs. uniprot
Match: D7FVA4_ECTSI (Probable extracellular nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA4_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 4.940e-45
Identity = 84/112 (75.00%), Postives = 90/112 (80.36%), Query Frame = 0

Query:    1 MGEFINVFCFENEPYECEFVYHDAIMVHDGEFKCQICDQDGERQDPGTDDFLSGADRDVNSGSDSSD--GIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 110
            MGEF +++CF NEPYECEFVY  + +VH GEFKCQICD +GERQ  GTDD L  A      G  SSD  GIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL
Sbjct:  372 MGEFNDMYCFANEPYECEFVYDQSDIVHSGEFKCQICDIEGERQQSGTDDDLIDASERSIDGDSSSDNQGIVIGLSLALGLTLVVIGALAVWKFRVRKNARRLMEDMGEGDL 483

[Close]

BLAST of mRNA_M-pyrifera_M_contig6467.15786.1 vs. uniprot
Match: D7FV99_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV99_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.680e-20
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 0

Query:    1 MGEFINVFCFENEPYECEFVYHDAIMVHDGEFKCQICDQDGERQDPGTDDFLSGA-DRDVNSGS-DSSDGIVIGLSLALGLTLVV-IGALAVWKFR 93
            MGEF +++CF NEPYECEFVY  + +VH+GEFKCQICD DG +Q  GTD  L+G+ D+  +S S DS D I+IGLS AL L +++ IG L    ++
Sbjct:  372 MGEFDDIYCFANEPYECEFVYDQSDIVHNGEFKCQICDIDGVQQVSGTDGDLTGSIDQSSSSNSWDSKDYIIIGLSAALALCIILAIGFLVARAYK 467

[Close]

BLAST of mRNA_M-pyrifera_M_contig6467.15786.1 vs. uniprot
Match: D7FVA0_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.380e-11
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 0

Query:    1 MGEFINVFCFENEPYECEFVYHDAIMVHDGEFKCQICDQDGERQD-PGTDD 50
            MGEF +++CF N+PYECEFVY  + +VH GEF CQ+C  DG RQ+  GTDD
Sbjct:  337 MGEFNDMYCFGNDPYECEFVYDQSDIVHSGEFNCQLCVIDGVRQEVSGTDD 387

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig6467.15786.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig6467.15786.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FVA4_ECTSI	4.940e-45	75.00	Probable extracellular nuclease n=1 Tax=Ectocarpus...	[more]
D7FV99_ECTSI	3.680e-20	54.17	Polymorphic outer membrane protein n=1 Tax=Ectocar...	[more]
D7FVA0_ECTSI	8.380e-11	60.78	Polymorphic outer membrane protein n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 91..110
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..68
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 69..90
None	No IPR available	TMHMM	TMhelix		coord: 68..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig6467	contig	M-pyrifera_M_contig6467:12190..13681 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig6467.15786.1	mRNA_M-pyrifera_M_contig6467.15786.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig6467 12190..13699 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig6467.15786.1 ID=prot_M-pyrifera_M_contig6467.15786.1|Name=mRNA_M-pyrifera_M_contig6467.15786.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MGEFINVFCFENEPYECEFVYHDAIMVHDGEFKCQICDQDGERQDPGTDD
FLSGADRDVNSGSDSSDGIVIGLSLALGLTLVVIGALAVWKFRVRKNARR
LMEDMGEGDL*