prot_M-pyrifera_M_contig64627.15773.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig64627.15773.1
Unique Nameprot_M-pyrifera_M_contig64627.15773.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length201
Homology
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BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A813CCZ0_9DINO (La protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CCZ0_9DINO)

HSP 1 Score: 145 bits (365), Expect = 1.930e-38
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 0 
Query:   25 ILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDSKDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKN--KAFKGSAFLEFHDRKDAEELVRRHNGAD----SGLNADLSLKRG 190
            I  QVE+YF+D+NFRRDK+LR +++ D QGYV +S LL FNRLKAL+SD A V   L  S  +QLS D  ++RRT+PLP  DDS DRTVY+KG P   +LDD+  +  G+   +  ARV MRR K+  K FKGS F+EF  ++ A++ V      +    +G   +  LKRG
Sbjct:   11 IKKQVEYYFNDANFRRDKHLRGIADADPQGYVDVSALLTFNRLKALSSDPAVVAAALEDSDIVQLSADKKKLRRTKPLPLSDDSADRTVYMKGFPVDAKLDDLIEFANGI---APTARVSMRRFKDEVKTFKGSVFVEFAGKEGADKAVAAGASEEGLTFAGTKLEKVLKRG 179
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BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A5A8E3Z1_CAFRO (HTH La-type RNA-binding domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3Z1_CAFRO)

HSP 1 Score: 127 bits (319), Expect = 2.570e-31
Identity = 73/152 (48.03%), Postives = 94/152 (61.84%), Query Frame = 0 
Query:   25 ILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDSKDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKNKAFKG--SAFLEFHDRKDAEELVRRH 174
            +L QVEFYFSD+NFRRDK+L++ + +D QG+V I  LL FNRLK L  DA  +   L  S  L LS DG++VRR  PLPA DDS+   VY+KG P+   L+ + AW    G    VAR V+RR   KA K   S F+E    + A  LV++H
Sbjct:    9 VLRQVEFYFSDANFRRDKFLQAKAAEDPQGFVPIEVLLSFNRLKQLGLDAKAISMALLESKELTLSADGAKVRRNTPLPATDDSRACMVYLKGFPEDVTLEQLEAW----GPNGDVARYVLRRVPGKADKQKPSIFMEMKTPEAAAALVKQH 156
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BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A7S1KPM8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KPM8_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 1.720e-30
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 0 
Query:   23 QEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDSKDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRR-------AKNKAFKGSAFLEFHDRKDAEELVR 172
            Q++  Q EFYF DSN   D +L+ L  +  QG+V I  ++ FNR+K +T+D   V   L+ S  LQLSED   VRR  PLP  DDSKDRT+YVK I KS  LDDI A+       +QV  V MR         K K+FKGSAF+EF  ++DA+++++
Sbjct:   24 QQVKKQFEFYFGDSNLPGDTFLKQLVSKSEQGWVPIQTIMDFNRMKKITTDMDLVANALSDSEMLQLSEDKKSVRRVVPLPENDDSKDRTIYVKRINKSASLDDIIAFFEK---HAQVNAVRMRHFVARDSDKKEKSFKGSAFVEFKTKEDADKVMK 177
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BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A7S0SSA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSA1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.240e-30
Identity = 66/145 (45.52%), Postives = 91/145 (62.76%), Query Frame = 0 
Query:   20 SEEQEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDSKDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKNKAFKGSAFLEFHDR 164
            S E  I  QVEFYFSDSNFR+D +L++ ++ D +G+V IS +L FN+L+ LT+D A V   +  S+ + L +D +RVRR+ PLP  D SK +T+YVKG P    +  I        V   +A V +RR + K FKGS F+EF DR
Sbjct:    2 SNESAIKKQVEFYFSDSNFRKDTFLKAAADSDPEGFVPISVVLTFNKLRNLTTDEAAVANAIENSNVVTLDDDKTRVRRSNPLPEDDTSKPKTLYVKGFPVEEPIVTIDEITELFSVYGDIAIVRLRRDETKKFKGSCFIEFVDR 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A7S1U3H7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3H7_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.720e-27
Identity = 59/149 (39.60%), Postives = 93/149 (62.42%), Query Frame = 0 
Query:   28 QVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDSKDRTVYVKGIPKS---CRLDDIFAWLRGLGVRSQVARVVMRRAKNKAFKGSAFLEFHDRKDAEELVRR 173
            QVEFYF D+NFRRDK+++  +  D  G++ I  LL FN+LKALT+DAA+V   LA S  +++  DG+  +R  PLP     KDR+V +KG  +      +D +   ++G G    V  V +RR +++ F+G+  +EF ++  A+EL++R
Sbjct:   12 QVEFYFGDANFRRDKFMKGKTRDDPDGFISIDTLLTFNKLKALTTDAAKVAEALAESDVVEVGRDGTAFKRKHPLPTDSQVKDRSVALKGFGEGNEEVTIDSVTDMVKGFGT---VGYVQLRRGRDRKFQGTVIVEFAEQAAADELLKR 157
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BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A044STG1_ONCVO (Uncharacterized protein n=4 Tax=Onchocercidae TaxID=6296 RepID=A0A044STG1_ONCVO)

HSP 1 Score: 112 bits (280), Expect = 1.080e-25
Identity = 71/189 (37.57%), Postives = 110/189 (58.20%), Query Frame = 0 
Query:   22 EQEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDS-------KDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKN--KAFKGSAFLEFHDRKDAEELVRRHNGADSGLNADLSLKRGGNVEWTGKGEE 201
            +Q+I++QVE+YF D N  RD++L+   ++D  G+V ++ +LRF RL  ++SD   +G  L  S  +Q+SEDGS++RR   +P  ++S       K RTVY+KG  +  +LDDI  +++  G    V  V+MRR K+  +AFKGS F+ + D++ AE  V   N      N +  LK   N  W  K +E
Sbjct:   58 QQKIVEQVEYYFGDINLPRDRFLQEEIKKD-DGWVQLTTMLRFKRLAQISSDPKTIGESLKHSKLMQVSEDGSKIRRNPEVPLPENSLEYWQVVKRRTVYIKGFERDTKLDDILNFVKQFG---SVENVMMRREKSEKRAFKGSVFVTYKDQETAEAFV---NSDTKQFNGNDLLKMMQNDYWANKQKE 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A8J2M5D6_9BILA (Hypothetical protein n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2M5D6_9BILA)

HSP 1 Score: 112 bits (279), Expect = 1.580e-25
Identity = 71/189 (37.57%), Postives = 110/189 (58.20%), Query Frame = 0 
Query:   22 EQEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDS-------KDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKN--KAFKGSAFLEFHDRKDAEELVRRHNGADSGLNADLSLKRGGNVEWTGKGEE 201
            +Q+I +QVE+YF D N  RD++L+   ++D  G+V ++ +L+F RL  ++SD A +G  L  S  +Q+SEDGS++RR   +P  ++S       K RTVY+KG  +  +LDDI  +++  G    V  V+MRR K+  +AFKGS F+ + D++ AE  V   N      N +  LK   N  W  K +E
Sbjct:   63 QQKITEQVEYYFGDINLPRDRFLQEEIKKD-DGWVQLTTMLKFKRLAQISSDPAVIGESLKHSKLMQVSEDGSKIRRNPEVPLPENSLEYWQVVKRRTVYIKGFERDTKLDDILNFVKQFG---SVENVMMRREKSEKRAFKGSVFVTYKDQEKAEAFV---NSDTKQFNGNDLLKMMQNDYWANKQKE 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A498SLL7_ACAVI (Uncharacterized protein n=1 Tax=Acanthocheilonema viteae TaxID=6277 RepID=A0A498SLL7_ACAVI)

HSP 1 Score: 112 bits (279), Expect = 1.580e-25
Identity = 70/189 (37.04%), Postives = 110/189 (58.20%), Query Frame = 0 
Query:   22 EQEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTRPLPAVDDS-------KDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKN--KAFKGSAFLEFHDRKDAEELVRRHNGADSGLNADLSLKRGGNVEWTGKGEE 201
            +Q+I++QVE+YF D N  RD++L+   ++D  G+V ++ +L+FNRL  ++SD   +   L  S  +Q+SEDGS++RR   +P  ++S       K RTVY+KG  +  +LDDI  +++  G    V  V+MRR K+  +AFKGS F+ + D++ AE  V   N      N +  LK   N  W  K +E
Sbjct:   63 QQKIIEQVEYYFGDINLPRDRFLQEEIKKD-DGWVQLTTMLKFNRLAQISSDPTIIAESLKHSKLMQVSEDGSKIRRNPEVPLPENSLEYWQVVKRRTVYIKGFERDTKLDDILNFVKQFG---SVENVMMRREKSEKRAFKGSVFVTYKDQEKAEAFV---NSGTKQFNGNDLLKMMQNDYWANKQKE 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A8C4N5L1_EPTBU (Small RNA binding exonuclease protection factor La n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4N5L1_EPTBU)

HSP 1 Score: 110 bits (276), Expect = 2.490e-25
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 0 
Query:   14 EKVALSSEEQEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSR--LQLSEDGSRVRR--TRPLPAVDDS-----KDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKNKAFKGSAFLEFHDRKDAEELV 171
            EK  LS  E++I++QVEFYF D N  RDK+LRS   Q   G+V +  ++RFNRLK+L+SD   +   L  SS   L++SEDG+ VRR  +R LP  D++     K+R+VYVKG P    LD++  W      R  V  V MRR   K FKGSAF  F   ++A   V
Sbjct:   14 EKKILSDLEKKIINQVEFYFGDHNLPRDKFLRS-EVQKNDGWVPLGVMIRFNRLKSLSSDLTAIAAALQKSSNGLLEISEDGTCVRRLPSRTLPTNDEAYRESIKNRSVYVKGFPGDATLDEVKEWF---DERGSVEVVHMRRTFQKMFKGSAFAVFDTAENANNFV 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Match: A0A8C4NDM8_EPTBU (Small RNA binding exonuclease protection factor La n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NDM8_EPTBU)

HSP 1 Score: 110 bits (276), Expect = 2.910e-25
Identity = 74/167 (44.31%), Postives = 98/167 (58.68%), Query Frame = 0 
Query:   14 EKVALSSEEQEILDQVEFYFSDSNFRRDKYLRSLSEQDAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSR--LQLSEDGSRVRR--TRPLPAVDDS-----KDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKNKAFKGSAFLEFHDRKDAEELV 171
            EK  LS  E++I++QVEFYF D N  RDK+LRS   Q   G+V +  ++RFNRLK+L+SD   +   L  SS   L++SEDG+ VRR  +R LP  D++     K+R+VYVKG P    LD++  W      R  V  V MRR   K FKGSAF  F   ++A   V
Sbjct:   14 EKKILSDLEKKIINQVEFYFGDHNLPRDKFLRS-EVQKNDGWVPLGVMIRFNRLKSLSSDLTAIAAALQKSSNGLLEISEDGTCVRRLPSRTLPTNDEAYRESIKNRSVYVKGFPGDATLDEVKEWF---DERGSVEVVHMRRTFQKMFKGSAFAVFDTAENANNFV 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig64627.15773.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813CCZ0_9DINO1.930e-3848.26La protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]
A0A5A8E3Z1_CAFRO2.570e-3148.03HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1KPM8_9EUKA1.720e-3045.86Hypothetical protein (Fragment) n=1 Tax=Percolomon... [more]
A0A7S0SSA1_9STRA4.240e-3045.52Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S1U3H7_9STRA2.720e-2739.60Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A044STG1_ONCVO1.080e-2537.57Uncharacterized protein n=4 Tax=Onchocercidae TaxI... [more]
A0A8J2M5D6_9BILA1.580e-2537.57Hypothetical protein n=1 Tax=Cercopithifilaria joh... [more]
A0A498SLL7_ACAVI1.580e-2537.04Uncharacterized protein n=1 Tax=Acanthocheilonema ... [more]
A0A8C4N5L1_EPTBU2.490e-2544.31Small RNA binding exonuclease protection factor La... [more]
A0A8C4NDM8_EPTBU2.910e-2544.31Small RNA binding exonuclease protection factor La... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002344Lupus La proteinPRINTSPR00302LUPUSLAcoord: 153..171
score: 40.19
coord: 28..45
score: 58.08
coord: 54..69
score: 40.91
coord: 105..121
score: 40.11
IPR006630La-type HTH domainSMARTSM00715lacoord: 19..99
e-value: 2.2E-25
score: 100.4
IPR006630La-type HTH domainPFAMPF05383Lacoord: 25..81
e-value: 9.7E-19
score: 67.2
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 15..106
score: 23.718
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 112..188
e-value: 0.0027
score: 26.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 113..177
e-value: 1.8E-7
score: 30.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 111..192
score: 9.678
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 19..105
e-value: 1.0E-26
score: 94.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 106..190
e-value: 8.0E-12
score: 47.1
NoneNo IPR availablePANTHERPTHR22792:SF118LUPUS LA PROTEIN HOMOLOGcoord: 15..176
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 15..176
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 21..105
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 103..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig64627contigM-pyrifera_M_contig64627:19..723 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig64627.15773.1mRNA_M-pyrifera_M_contig64627.15773.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig64627 19..723 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig64627.15773.1 ID=prot_M-pyrifera_M_contig64627.15773.1|Name=mRNA_M-pyrifera_M_contig64627.15773.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=201bp
MAEGDATSGAAAAEKVALSSEEQEILDQVEFYFSDSNFRRDKYLRSLSEQ
DAQGYVGISELLRFNRLKALTSDAAQVGRVLAASSRLQLSEDGSRVRRTR
PLPAVDDSKDRTVYVKGIPKSCRLDDIFAWLRGLGVRSQVARVVMRRAKN
KAFKGSAFLEFHDRKDAEELVRRHNGADSGLNADLSLKRGGNVEWTGKGE
E
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002344Lupus_La
IPR006630La_HTH
IPR000504RRM_dom
IPR036388WH-like_DNA-bd_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR036390WH_DNA-bd_sf
IPR035979RBD_domain_sf