prot_M-pyrifera_M_contig64487.15747.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig64487.15747.1
Unique Nameprot_M-pyrifera_M_contig64487.15747.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length67
Homology
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Match: A0A7Y2IIH6_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IIH6_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 8.270e-22
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0
Query:    1 YPPILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDIIDTLKRNRVIP 59
            YP ILTTAQVAE+LDLN RTVL MAGDGR+PASRL GSRK+HF  + II TLK N V P
Sbjct:   15 YPAILTTAQVAEMLDLNVRTVLNMAGDGRLPASRLAGSRKFHFSRDQIIATLKENTVTP 73          
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Match: A0A7Y2GT91_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2GT91_9ACTN)

HSP 1 Score: 88.2 bits (217), Expect = 1.970e-21
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0
Query:    1 YPPILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDIIDTLKRNRVIP 59
            YP ILTTAQVAE+LDLN RTVL MAGDGR+PASRL GSRK+H+  + II+TLK N V P
Sbjct:   15 YPAILTTAQVAEMLDLNVRTVLNMAGDGRLPASRLAGSRKFHYSRDQIIETLKANTVDP 73          
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Match: A0A7V8WWE0_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V8WWE0_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 3.560e-18
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0
Query:    1 YPPILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDIIDTLK 53
            YPPIL TAQVAELL LN RTV+ MA DGR+PASRL  SRKYHF L++II TL+
Sbjct:   16 YPPILDTAQVAELLGLNVRTVMVMANDGRLPASRLPESRKYHFFLDEIIATLR 68          
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Match: A0A7V9B2U3_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9B2U3_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 3.550e-15
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    4 ILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDIIDTLKRNRVIPESAPTS 65
            +L TAQVAELL LN RTV+ MA DGR+PASRL  SRKYHF LEDII  L R+    E+A T+
Sbjct:    1 MLDTAQVAELLGLNVRTVMGMANDGRLPASRLPDSRKYHFFLEDIIAAL-RDHPAAEAADTA 61          
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Match: A0A6N8UPY4_9ACTN (Helix-turn-helix domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N8UPY4_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 1.010e-7
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 YPPILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDIID 50
            YPP++ TAQ AELL +N + V     +GR+PA +L GSR Y F+  ++ID
Sbjct:   64 YPPVIDTAQAAELLRMNVQMVRKYVREGRLPAYQLPGSRVYRFIYSEVID 113          
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Match: A0A7K2AL29_9ACTN (Helix-turn-helix domain-containing protein (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2AL29_9ACTN)

HSP 1 Score: 50.1 bits (118), Expect = 1.810e-6
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 0
Query:    1 YPPILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDI 48
            YPP++ TAQ AELL +N   V     +GR+PA +L GSR Y F+  ++
Sbjct:   32 YPPVIDTAQAAELLCMNVERVRRYVREGRLPAYQLPGSRVYRFIYSEV 79          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig64487.15747.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7Y2IIH6_9ACTN8.270e-2274.58Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7Y2GT91_9ACTN1.970e-2172.88Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7V8WWE0_9ACTN3.560e-1873.58Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7V9B2U3_9ACTN3.550e-1564.52Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A6N8UPY4_9ACTN1.010e-748.00Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A7K2AL29_9ACTN1.810e-645.83Helix-turn-helix domain-containing protein (Fragme... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010093SinI-like, DNA-binding domainTIGRFAMTIGR01764TIGR01764coord: 5..47
e-value: 1.5E-7
score: 29.7
IPR041657Helix-turn-helix domain, group 17PFAMPF12728HTH_17coord: 5..56
e-value: 8.2E-8
score: 32.3
NoneNo IPR availableGENE3D1.10.1660.10coord: 1..55
e-value: 7.5E-8
score: 33.9
IPR009061Putative DNA-binding domain superfamilySUPERFAMILY46955Putative DNA-binding domaincoord: 4..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig64487contigM-pyrifera_M_contig64487:934..1134 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig64487.15747.1mRNA_M-pyrifera_M_contig64487.15747.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig64487 934..1134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig64487.15747.1 ID=prot_M-pyrifera_M_contig64487.15747.1|Name=mRNA_M-pyrifera_M_contig64487.15747.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
YPPILTTAQVAELLDLNTRTVLTMAGDGRIPASRLEGSRKYHFVLEDIID
TLKRNRVIPESAPTSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010093SinI_DNA-bd
IPR041657HTH_17
IPR009061DNA-bd_dom_put_sf