prot_M-pyrifera_M_contig12979.5806.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig12979.5806.1
Unique Nameprot_M-pyrifera_M_contig12979.5806.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length339
Homology
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BLAST of mRNA_M-pyrifera_M_contig12979.5806.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.630e-28
Identity = 59/78 (75.64%), Postives = 68/78 (87.18%), Query Frame = 0 
Query:  137 LPRKGVVQSVNAEGCSWIKKDGNASRKNGNRIPFSMADVVNKEGEVQPPLQKGDHVEYRAWKDSEGRLMAVRVERARE 214
            LPRKGVVQ++++EG SWIKKDG  SRK+GNRIPF M DVV K+GE + PLQKGDHVEYR WKD+EGR MAVRVERA+E
Sbjct:  427 LPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKE 504
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12979.5806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTW6_ECTSI1.630e-2875.64HTH La-type RNA-binding domain-containing protein ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 139..215
e-value: 1.0E-5
score: 27.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12979contigM-pyrifera_M_contig12979:191..6273 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12979.5806.1mRNA_M-pyrifera_M_contig12979.5806.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig12979 191..6273 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig12979.5806.1 ID=prot_M-pyrifera_M_contig12979.5806.1|Name=mRNA_M-pyrifera_M_contig12979.5806.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=339bp
KKTKTKNVCRANSRSPTGEGSANIRERQMRSRSLTEIELETAFGAAVTVA
GGVGEAGGGRRATPSPVSREKEALAEGGGGDGGGSSGDGEDAVPVTRKPR
SVSNADALVSGGGGGGGGGGGGGGGGGGAGAGAGGELPRKGVVQSVNAEG
CSWIKKDGNASRKNGNRIPFSMADVVNKEGEVQPPLQKGDHVEYRAWKDS
EGRLMAVRVERARERPRVAGGGVGVGGGGGGGPGLNLQRRTDRTAQAHFR
MAVGPEEGKAGFGAGRGRPIVATDASVATAGNGGGAASDSGGAGEGLRRP
RGSSMGGPDSKVFVPSSAIVSDAVAAAVAATVAAAVATA
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