prot_M-pyrifera_M_contig125688.5188.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig125688.5188.1
Unique Nameprot_M-pyrifera_M_contig125688.5188.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length170
Homology
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A3D5DGP2_9GAMM (Lipopolysaccharide export system protein LptC n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGP2_9GAMM)

HSP 1 Score: 270 bits (691), Expect = 1.990e-90
Identity = 134/168 (79.76%), Postives = 146/168 (86.90%), Query Frame = 0
Query:    1 LWQSLDEDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHEVTPQ 168
            LWQ LDE          HEPDYYIE MVRNTLDE GAL+NVLYADLVTH+PDDD+TEL+ PRMEIYNG  DPWYVIAE+GWVSSG+EVVLLHGEVEIWRL++ G REFEV+TSELRVLPQEQYAET DPATITS  TI++TIGMRANFAHDRLELLKQV+SRHEV PQ
Sbjct:   21 LWQQLDETQGYIMPIGVHEPDYYIEDMVRNTLDENGALKNVLYADLVTHFPDDDTTELDRPRMEIYNGKSDPWYVIAESGWVSSGSEVVLLHGEVEIWRLDKTGNREFEVITSELRVLPQEQYAETSDPATITSKATISRTIGMRANFAHDRLELLKQVRSRHEVNPQ 188          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A523NXU5_9PROT (LPS export ABC transporter periplasmic protein LptC (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NXU5_9PROT)

HSP 1 Score: 211 bits (537), Expect = 7.110e-68
Identity = 101/127 (79.53%), Postives = 115/127 (90.55%), Query Frame = 0
Query:   43 YADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHEVTPQS 169
            YA+LVTHYPDDDSTEL  PR+EIYN N DPWYV+AE+GWVSSGNE+VLLHGEVEIWR ++QG RE EV+TSELRVLP+EQYAETD+PATITSATT+T TIGMRANFAHDRLELL  V++RHE+ P S
Sbjct:    1 YAELVTHYPDDDSTELLRPRIEIYNNNADPWYVVAESGWVSSGNEIVLLHGEVEIWREDDQGVREIEVITSELRVLPKEQYAETDNPATITSATTVTNTIGMRANFAHDRLELLNNVRTRHEIIPPS 127          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A2E2BAS7_9GAMM (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E2BAS7_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 9.420e-56
Identity = 88/171 (51.46%), Postives = 128/171 (74.85%), Query Frame = 0
Query:    1 LWQSLD-EDSEVAQLSAPHE-PDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHEVTPQS 169
            LW S+  ED+ +       E PDYYIE MVR T+DE+G ++ +LYADLV H+P DDS +L+ P +++YN    PW+V +ETGWVSSGNEV+LLHGEVEIWRL+ + +R  + LTSELRVLP ++YAE+++P+ I   + +T ++G+RANF+H+ LEL+++V+S+H+    S
Sbjct:   18 LWLSMGIEDAGIISSKRDLEDPDYYIENMVRRTMDESGEVRTILYADLVEHFPSDDSMDLQKPYLQLYNTAGQPWHVKSETGWVSSGNEVILLHGEVEIWRLDSEQKRIIQALTSELRVLPDDEYAESNEPSIIVHPSAVTHSVGLRANFSHNHLELVREVRSKHKKNKTS 188          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A3M1DMT8_9GAMM (Lipopolysaccharide export system protein LptC n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M1DMT8_9GAMM)

HSP 1 Score: 154 bits (388), Expect = 2.250e-44
Identity = 77/168 (45.83%), Postives = 113/168 (67.26%), Query Frame = 0
Query:    1 LWQSLDEDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHEVTPQ 168
            L + L E +   Q    H PD Y+E  VR  +D+ G L+N L A  + HYPDDD+TE+  PR+++ +G+  P +V A+  W SS NEV+LL+GEV IWR    G+RE E++TS+L+VLP+E+YAET++P TI     +T   G+RA+ A  RL+LL +V+SR+E +P+
Sbjct:   22 LLERLRERATARQAVEQHHPDLYMENFVRLGMDKEGRLRNRLRATRLMHYPDDDTTEMIRPRLQVISGDGVPMFVTADRAWASSDNEVILLYGEVRIWRNRPDGERELELITSDLKVLPEEEYAETEEPVTIIGDRMVTDATGLRADLARRRLKLLHKVRSRYETSPR 189          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A2E5NIT9_9PROT (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5NIT9_9PROT)

HSP 1 Score: 127 bits (318), Expect = 7.880e-34
Identity = 64/164 (39.02%), Postives = 101/164 (61.59%), Query Frame = 0
Query:    1 LWQSLDEDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHE 164
            + + LD+D  +A+    H PD+++E+    T+DE G     + AD + H+ D  + ELE P + +Y+ +  PW+V ++ GWVS  ++ +LL G+VEIWR  + GQR  E+LT +LRVLP+ QY ET +   I +  + +K +GMRA     RLELL +V + +E
Sbjct:   21 ILKELDDDQALAKTEVSHIPDFFMEHFSAVTMDENGKPMRRIAADYLVHFADTQTKELEKPYLIVYHPSRPPWHVKSDRGWVSKDDDEMLLLGQVEIWREGKSGQRVLEILTRDLRVLPEAQYGETSEQVVIRTKNSESKGVGMRAYLEERRLELLSEVVTTYE 184          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A661BVS6_9GAMM (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BVS6_9GAMM)

HSP 1 Score: 124 bits (312), Expect = 5.970e-33
Identity = 65/156 (41.67%), Postives = 100/156 (64.10%), Query Frame = 0
Query:    7 EDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSR 162
            E +E++ L   H+PD Y+  +   T+++ G+ +N LYAD + HYPDD++ EL NP++EI+     P  + AE GWV+  NEV+LL G+  + +L+  G R+ E++TS++RVL  ++YAETD PATI       K+ GM A    +RLELL  V ++
Sbjct:   30 ESTEISVLR--HDPDNYMYELTTLTMNQDGSKKNKLYADYMAHYPDDNTIELINPKLEIFRVEEPPTTITAEKGWVTEDNEVILLSGKTRLIQLDNNGVRQLEIITSDVRVLLDQEYAETDKPATIFGKKITIKSTGMNAYLGENRLELLNNVYTK 183          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A1Z8WUP8_9GAMM (Lipopolysaccharide export system protein LptC n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WUP8_9GAMM)

HSP 1 Score: 123 bits (308), Expect = 4.560e-32
Identity = 56/157 (35.67%), Postives = 104/157 (66.24%), Query Frame = 0
Query:    8 DSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHE 164
            DS  +     HEPDY++E M R + ++ G +QN L + LV H+P DDS E ++P+M+I+     PW V++++ WV+S   +VLL+G+V IW+++ +G +++E+ TS+L + P +++A T   A IT+   +T T+G++  +   R++L ++V++ +E
Sbjct:   52 DSNPSAKGTDHEPDYFVENMERFSYNKNGKIQNELVSPLVKHFPHDDSLEFKSPQMKIHEKEGFPWNVVSDSAWVNSDRSLVLLNGKVYIWKMDAEGNKKYEIRTSDLTIRPDKKFAHTTKAARITTQGIVTNTVGLKVVYKEGRVQLSERVRTIYE 208          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A661BMH4_9GAMM (LPS export ABC transporter periplasmic protein LptC (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BMH4_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 9.030e-32
Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   18 HEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKS 161
            H PD+Y+E      + E+G  + VL A  + HY D D+ EL  P M +Y+    PW+V +E GWVS+  +VVLL G+V IWR +EQG RE E+ T +LRVLP+  Y ETD P TI +  + ++  GMRA    DRL L+ Q ++
Sbjct:   38 HTPDFYMEEFTTTVMGESGKPERVLKAARMVHYADTDTRELTRPYMVLYHPERQPWHVESERGWVSANGDVVLLLGKVHIWRDDEQGVREMEIRTRDLRVLPESNYGETDKPVTIRAGRSESRRRGMRALRDPDRLALVAQAQT 181          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A1G0JZW1_9GAMM (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0JZW1_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 1.040e-31
Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 0
Query:    1 LWQSLDEDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHEVTP 167
            L + L  + E   +   H+PDYY+E     T++E G  ++ L A  + HYPD+D+TEL  P ME+Y     P Y+ AE GWV+S N VV+L G V +W  +  G+R  +V TS  +VL   +YAETD PA I S  +    IGMRA F   RLE+LK  ++  E  P
Sbjct:   21 LLRYLGSEREGPDIGVYHDPDYYMEDFSTLTMEEDGRPKSRLRAVYMAHYPDNDTTELLKPTMEVYRIGRLPLYISAERGWVTSDNNVVVLRGAVRMWEDDAAGKRVLQVDTSSAKVLLDSEYAETDQPAVIVSKQSTISGIGMRAYFRDSRLEVLKHERTIIETGP 187          
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Match: A0A382RQQ5_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382RQQ5_9ZZZZ)

HSP 1 Score: 120 bits (302), Expect = 2.130e-31
Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 0
Query:    1 LWQSLDEDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHYPDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRLNEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAHDRLELLKQVKSRHE 164
            L  +L  D + A     H PDYY+E      ++E GA +N L A  + HYPDD++TEL+ P+++I+  N  P  V A+ GWV+S NEVVLL G V +++ +  G+   E++T + RVL  ++YAETD PAT+ +  +IT +IGMR      R+E L  V++  E
Sbjct:   22 LLDTLIVDDKEALAKIAHYPDYYMENFNTLKMNEDGAPKNHLSASYMAHYPDDNTTELDYPKLKIFRENKLPINVSADKGWVTSSNEVVLLIGNVYLYQTDSSGEMNLELMTKDARVLIDKKYAETDKPATLINKNSITNSIGMRIYLQDQRMEFLNNVQTTIE 185          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125688.5188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DGP2_9GAMM1.990e-9079.76Lipopolysaccharide export system protein LptC n=1 ... [more]
A0A523NXU5_9PROT7.110e-6879.53LPS export ABC transporter periplasmic protein Lpt... [more]
A0A2E2BAS7_9GAMM9.420e-5651.46LPS export ABC transporter periplasmic protein Lpt... [more]
A0A3M1DMT8_9GAMM2.250e-4445.83Lipopolysaccharide export system protein LptC n=1 ... [more]
A0A2E5NIT9_9PROT7.880e-3439.02LPS export ABC transporter periplasmic protein Lpt... [more]
A0A661BVS6_9GAMM5.970e-3341.67LPS export ABC transporter periplasmic protein Lpt... [more]
A0A1Z8WUP8_9GAMM4.560e-3235.67Lipopolysaccharide export system protein LptC n=1 ... [more]
A0A661BMH4_9GAMM9.030e-3244.44LPS export ABC transporter periplasmic protein Lpt... [more]
A0A1G0JZW1_9GAMM1.040e-3141.92LPS export ABC transporter periplasmic protein Lpt... [more]
A0A382RQQ5_9ZZZZ2.130e-3140.85Uncharacterized protein n=1 Tax=marine metagenome ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010664Lipopolysaccharide assembly, LptC-relatedPFAMPF06835LptCcoord: 9..164
e-value: 1.1E-38
score: 132.6
IPR026265Lipopolysaccharide export system protein LptCTIGRFAMTIGR04409TIGR04409coord: 8..162
e-value: 1.3E-38
score: 130.3
NoneNo IPR availableGENE3D2.60.450.10coord: 41..169
e-value: 1.4E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR37481FAMILY NOT NAMEDcoord: 7..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125688contigM-pyrifera_M_contig125688:3..512 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125688.5188.1mRNA_M-pyrifera_M_contig125688.5188.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig125688 3..512 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig125688.5188.1 ID=prot_M-pyrifera_M_contig125688.5188.1|Name=mRNA_M-pyrifera_M_contig125688.5188.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
LWQSLDEDSEVAQLSAPHEPDYYIEYMVRNTLDETGALQNVLYADLVTHY
PDDDSTELENPRMEIYNGNPDPWYVIAETGWVSSGNEVVLLHGEVEIWRL
NEQGQREFEVLTSELRVLPQEQYAETDDPATITSATTITKTIGMRANFAH
DRLELLKQVKSRHEVTPQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010664LipoPS_assembly_LptC-rel
IPR026265LptC