prot_M-pyrifera_M_contig11959.4039.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11959.4039.1
Unique Nameprot_M-pyrifera_M_contig11959.4039.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length226
Homology
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: D7FMS6_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 2.620e-115
Identity = 172/225 (76.44%), Postives = 183/225 (81.33%), Query Frame = 0
Query:    1 MFDLLCESWKTNPLTRNKAVPDWRRFASWMSALCTDLAGMVSKIPGSDAQNPRYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            +FD LCE+W+TN LT+NKAVPDWRRF SWMSALCTDL  MVSKIPGSD QNPRYVVNMA MVQYIR NLVKCT RDRYGKETARIMEILLQNK+L+QQQVGEMAM+PPS+ARERLYRL++DRMVSVQEVPKRADRNPNTTFYLW IKHDQVAQVVL+SLYKAMLNMRLRRKFVYSNDK LFIHDA                               ENLMFFNTF
Sbjct:  100 LFDKLCEAWQTNNLTKNKAVPDWRRFVSWMSALCTDLTSMVSKIPGSDTQNPRYVVNMAKMVQYIRGNLVKCTARDRYGKETARIMEILLQNKYLDQQQVGEMAMIPPSDARERLYRLVRDRMVSVQEVPKRADRNPNTTFYLWTIKHDQVAQVVLESLYKAMLNMRLRRKFVYSNDKALFIHDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENLMFFNTF 324          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A024GFJ4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ4_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.100e-37
Identity = 70/211 (33.18%), Postives = 133/211 (63.03%), Query Frame = 0
Query:   23 WRRFASWMSALCTDLAGMVSKIPGSDAQ--------NPRYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            WR   ++++ +  D +GM++++    A           +YVV+M N+  Y++   +   ++D++G ++ARI+ ++L+ + LEQ+ +GE+A+LP +EAR RLY L +D+++ +QE+PKR+D NP  T Y W++    + +V+ + +  ++  +R RR F+   +KEL     +++L  E + E+ D++ + LDRLD ++L+LDENLM +  F
Sbjct:  439 WRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKFGVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIAR--SSQLVEENDLEKFDKLSQGLDRLDRSILQLDENLMLYRDF 647          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A0P1AWK6_PLAHL (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWK6_PLAHL)

HSP 1 Score: 143 bits (361), Expect = 5.510e-36
Identity = 78/222 (35.14%), Postives = 135/222 (60.81%), Query Frame = 0
Query:   18 KAVPD-----WRRFASWMSALCTDLAGMVSKIPGSDAQNP---------RYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            KA+P      WR   ++++ +C D +GM+ K+   +A +P         +YVV+M  +V++++   V   ++D+YG  +ARI+ +L++ + LEQ+ +GE+A+LP ++AR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RRKF    +KEL     + +L    + ++ D++ RSLDRLD A++ LD  LM F  F
Sbjct:  423 KALPSESNNPWRLLLNYITVMCRDKSGMIMKV-AQEAFDPTKARASDGGQYVVHMQKIVEFLQQATVHAYIQDKYGVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIAR--SEQLVEALDIDKFDKLSRSLDRLDRAIIHLDGMLMLFRDF 641          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: H3GD40_PHYRM (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD40_PHYRM)

HSP 1 Score: 142 bits (357), Expect = 1.560e-35
Identity = 76/222 (34.23%), Postives = 134/222 (60.36%), Query Frame = 0
Query:   18 KAVPD-----WRRFASWMSALCTDLAGMVSKIPGSDAQNP---------RYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            KA+P      WR   +++  +C D +GMV K+   +A +P         +YVV+M  +V++++    +  ++D+YG  +ARI+ +L++ + LEQ+ +GE+A+LP ++AR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RRKF    +KEL     + +L    + ++ D++ RSLDRLD A++ LD  LM +  F
Sbjct:  389 KALPSEANNPWRLLLNYIMVMCRDKSGMVMKV-SQEAFDPTQARSGDGGQYVVHMQKIVEFLQQATTRAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQTRIAERVQDSLCRLRRRRKFEAEENKELIAR--SEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 607          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: G4Z0C0_PHYSP (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z0C0_PHYSP)

HSP 1 Score: 140 bits (353), Expect = 5.370e-35
Identity = 73/212 (34.43%), Postives = 129/212 (60.85%), Query Frame = 0
Query:   23 WRRFASWMSALCTDLAGMVSKIPGSDAQNP---------RYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            WR   +++  +C D +GMV K+   +A +P         +YVV+M  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ +GE+A+LP ++AR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RRKF    +KEL     + +L    + ++ D++ RSLDRLD A++ LD  LM +  F
Sbjct:  392 WRLLLNYIMVMCRDKSGMVMKV-AQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIAR--SEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 600          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A0W8C9C8_PHYNI (DNA-directed RNA polymerase III subunit RPC3 n=12 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C9C8_PHYNI)

HSP 1 Score: 140 bits (354), Expect = 5.990e-35
Identity = 74/212 (34.91%), Postives = 129/212 (60.85%), Query Frame = 0
Query:   23 WRRFASWMSALCTDLAGMVSKIPGSDAQNP---------RYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            WR   +++  +C D +GMV K+   +A +P         +YVV+M  +V++++       ++D+YG  +ARI+ +L++ + LEQ+ +GE+A+LP ++AR RLY L  D+++ +QE+PKRAD NP  TF+ W++   Q+   V + +  ++  +R RRKF    +KEL     + +L    + ++ D++ RSLDRLD A++ LD  LM +  F
Sbjct:  461 WRLLLNYIMVMCRDKSGMVMKV-AQEAFDPIQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKYGVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIAR--SEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 669          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A484E8N6_BRELC (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8N6_BRELC)

HSP 1 Score: 139 bits (351), Expect = 1.380e-34
Identity = 79/227 (34.80%), Postives = 134/227 (59.03%), Query Frame = 0
Query:   12 NPLTRNKAVPD-----WRRFASWMSALCTDLAGMVSKIPGS--DAQNPR------YVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            N  T  KA+P      WR   ++++ +C D +GM+ K+     D+   R      YVV+M  +V++++       ++DR+G  +ARI+ +L++ + LEQ+ +GE+A+LP +EAR RLY L  D++V +QE+PKRAD NP  TF+ W++   Q+   + + +  ++  +R RR F    +KEL     + +L    + ++ D++ RSLDRLD A+++LD  LM F  F
Sbjct:  422 NMETVKKALPSEANNPWRLLLNYITVMCRDKSGMMMKVAQETFDSTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDRFGVASARIVRLLIEKRQLEQKTIGELALLPSNEARHRLYELYTDKLVKMQEIPKRADHNPAFTFFCWSVDIPQMHVRITERVQGSLCRLRRRRTFEAEENKELIAR--SEQLVEAHDLDKFDKLSRSLDRLDRAIIQLDGMLMLFRDF 646          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A5D6XL36_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL36_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.320e-34
Identity = 77/211 (36.49%), Postives = 125/211 (59.24%), Query Frame = 0
Query:   23 WRRFASWMSALCTDLAGMVSKIPGS--DAQNPR------YVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            WR   ++++ +C D +GMV K+     DA   R      YVV+M  +V ++R       V+D++G  +ARI+ +L++ + LEQQ +GE+A+LP ++AR RLY L  +R+V +QEVPKRAD NP  T Y W++   ++ + V + +  ++  +R RRK     +KEL         +N+  +   D++ R+LDRLD A+L+LD  LM +  F
Sbjct:  454 WRLLLNYITVMCRDKSGMVMKVAPETFDATQARAGDGGQYVVHMQKIVAFLRQATTHAYVQDKFGVPSARIVRLLVEKRQLEQQTIGELALLPSNDARRRLYELFAERLVKLQEVPKRADHNPAFTLYCWSVDVPRMERSVRERVEASLCKLRARRKLEAEQNKELIARSDQLVEANDVAK--FDKLSRALDRLDRAVLQLDAMLMLYRDF 662          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A3R7FY14_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FY14_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.380e-33
Identity = 71/212 (33.49%), Postives = 128/212 (60.38%), Query Frame = 0
Query:   23 WRRFASWMSALCTDLAGMVSKIPGSDAQNP---------RYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            WR   +++  +C D +GMV K+   +A +P         +YVV+M  +V++++       ++D++G  +ARI+ +L++ + LEQ+ +GE+A+LP ++AR RLY L  +++V +QE+PKRAD NP  TF+ W++    +   + + +  ++  +R RRKF    +KEL     + +L    + ++ D++ RSLDRLD A++ LD  LM +  F
Sbjct:  443 WRLLLNYIMVMCRDKSGMVMKV-AQEAFDPSQARSGDGGQYVVHMQKIVEFLQQVTTHAYIQDKFGAASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYGEKLVKMQEIPKRADHNPAFTFFCWSVDVPHMQTRITERVQDSLCRLRRRRKFEAEENKELIAR--SEQLVEGNDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 651          
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Match: A0A8K1CIH0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIH0_PYTOL)

HSP 1 Score: 133 bits (335), Expect = 1.920e-32
Identity = 68/212 (32.08%), Postives = 129/212 (60.85%), Query Frame = 0
Query:   23 WRRFASWMSALCTDLAGMVSKIPGSDAQNP---------RYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQVGEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQVAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQVRRSLDRLDTALLRLDENLMFFNTF 225
            WR   ++++ +C D +GMV K+  ++A +P         +Y V+M  +++++R +     + +++G ++ARI+ +L++ + LEQ+ +GE+A+LP ++AR RLY L ++ +V +QE+PKRAD NP  T Y W++    +   + + +  ++  +R RRK     +KEL     + +L +E +  + D++ R+LDRLD A++ LD  LM +  F
Sbjct:  411 WRLLLNYITVMCRDKSGMVMKV-AAEAFDPTQARAGDGGQYAVHMKKIIEFLRQSTSHAYISEKFGVQSARIIRLLMEKRQLEQKTIGELALLPSNDARRRLYELYRENLVKLQEIPKRADHNPAFTMYCWSVDVPGLELSIAERIQDSLSKLRRRRKDEAEQNKELIAR--SDQLVDENDLAKFDKISRALDRLDRAIIHLDNMLMLYRDF 619          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11959.4039.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMS6_ECTSI2.620e-11576.44DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A024GFJ4_9STRA6.100e-3733.18DNA-directed RNA polymerase III subunit RPC3 n=2 T... [more]
A0A0P1AWK6_PLAHL5.510e-3635.14DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
H3GD40_PHYRM1.560e-3534.23DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
G4Z0C0_PHYSP5.370e-3534.43DNA-directed RNA polymerase III subunit RPC3 (Frag... [more]
A0A0W8C9C8_PHYNI5.990e-3534.91DNA-directed RNA polymerase III subunit RPC3 n=12 ... [more]
A0A484E8N6_BRELC1.380e-3434.80DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A5D6XL36_9STRA5.320e-3436.49DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A3R7FY14_9STRA3.380e-3333.49DNA-directed RNA polymerase III subunit RPC3 n=3 T... [more]
A0A8K1CIH0_PYTOL1.920e-3232.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 191..218
IPR024550TFIIEalpha/SarR/Rpc3 HTH domainPFAMPF02002TFIIE_alphacoord: 68..161
e-value: 4.6E-9
score: 36.1
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 59..147
e-value: 4.6E-29
score: 102.1
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 24..224
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 65..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11959contigM-pyrifera_M_contig11959:307..6325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11959.4039.1mRNA_M-pyrifera_M_contig11959.4039.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11959 289..7278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11959.4039.1 ID=prot_M-pyrifera_M_contig11959.4039.1|Name=mRNA_M-pyrifera_M_contig11959.4039.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=226bp
MFDLLCESWKTNPLTRNKAVPDWRRFASWMSALCTDLAGMVSKIPGSDAQ
NPRYVVNMANMVQYIRSNLVKCTVRDRYGKETARIMEILLQNKFLEQQQV
GEMAMLPPSEARERLYRLLKDRMVSVQEVPKRADRNPNTTFYLWNIKHDQ
VAQVVLDSLYKAMLNMRLRRKFVYSNDKELFIHDAAARLSNETERERLDQ
VRRSLDRLDTALLRLDENLMFFNTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024550TFIIEa/SarR/Rpc3_HTH_dom
IPR036388WH-like_DNA-bd_sf
IPR039748RPC3
IPR036390WH_DNA-bd_sf