prot_M-pyrifera_M_contig10498.1071.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig10498.1071.1
Unique Nameprot_M-pyrifera_M_contig10498.1071.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length485
Homology
BLAST of mRNA_M-pyrifera_M_contig10498.1071.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 9.790e-104
Identity = 278/558 (49.82%), Postives = 302/558 (54.12%), Query Frame = 0
Query:    1 DDNASAARQCSASAIFLALYDQP-----ADEEMPIMELPGSDAKSDGGXXXXXXXXXXXRGDGSCRLGDLLRQCNTGVKNFMEHLTLVAGRLPPPLSERLQPDLRVMKEGIVVTKMLHGKYVQIWNERNSLFSSAML-----------EASGSPNGVSPSVEGE-------------------AAALSLC------PPSDPQALPRLGWYLYLLTKDVLGFRSSNASFVHCLNLVLAALGAVVWNSS-----------------PR--YS---SCSLSSSSHASPQCVGGRDEGGAAEGEEEAVGIDXXXXXXXXXXXECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDYGGEAALLAALSACGKCPADEVRAMSARVVGVIEVLLREGIVVSHHSSCSTPNPXXXXXXXXXXXXXEAAPEAADLREVSPAGAEAEVEAPREEDVAEISSPITGRAERVAGVFHAAVAAENASRLDRCYWARVSERAGRG-----GVGVLDEAFVLTPGLSRDTVGTPR-----PGRSALTPSVSRTSRQLFQDYQK 485
            +D  +A R CSASAIFLALYD       A++  P     G+D                 RG G+CRLGDLLRQCNTGVK FMEHLTLVAGRLP PLS RL  DLRVMKEGIVVTKML+GKY QIWNER+SLF  A+            +++   NGV PS   E                   +AA++        PPSDPQALPRLGWYLYLLTKDVLGFRSSNA+FV CLNLVLAALGAVVWNS                  PR  YS   S  L+  S AS    GGR EG +A   +                 E       XXXXXXXXXXXXXXXXX                 YGGEAALLA LSA G+CPA EVRAMSA VV VIE LL+EGIVVSH    S                                                       RAERVAGVFH +VA EN  RLD CYWARVS+R G       GV VLDEAFVLTP L RDTVGTPR     P RSALTPSVSRTSRQLFQDYQ+
Sbjct:    9 EDAKTAERLCSASAIFLALYDDDEPAAEAEDAQPRATTTGADG----------------RGGGTCRLGDLLRQCNTGVKGFMEHLTLVAGRLPGPLSARLDGDLRVMKEGIVVTKMLYGKYRQIWNERDSLFPPAIFGPSSAAFGNDGDSNNMTNGVLPSQAAENNKGGXXXXXXTSDDHDINSAAVAAAGFPLPLPPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSXXXXXXXXXXXXXXXXXXPRGCYSRRRSSLLADGSGASGGLEGGR-EGASAPAADSEPATAVAAPRAGSEGGEAVESETAXXXXXXXXXXXXXXXXXT----------------YGGEAALLAKLSASGRCPAKEVRAMSAHVVEVIEALLQEGIVVSHQQLAS-------------------------------------------------------RAERVAGVFHPSVAGENVDRLDACYWARVSQRGGXXXXXHRGV-VLDEAFVLTPDL-RDTVGTPRYGGSTPRRSALTPSVSRTSRQLFQDYQR 476          
BLAST of mRNA_M-pyrifera_M_contig10498.1071.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 5.980e-75
Identity = 254/516 (49.22%), Postives = 286/516 (55.43%), Query Frame = 0
Query:    1 DDNASAARQCSASAIFLALYD--QPADEEMPIMELPGSDAKSDGGXXXXXXXXXXXRGDGSCRLGDLLRQCNTGVKNFMEHLTLVAGRLPPPLSERLQPDLRVMKEGIVVTKMLHGKYVQIWNERNSL---FSSAMLEASGSPNGVSPSVEGEAAALSLCPPSDPQALPRLGWYLYLLTKDVLGFRSSNASFVHCLNLVLAALGAVVWNSS--------PR--YS---SCSLSSSSHASPQCVGGRDEGGAAEGEEEAVGIDXXXXXXXXXXXECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYDYGGEAALLAALSACGKCPADEVRAMSARVVGVIEVLLREGIVVSHHSSCSTPNPXXXXXXXXXXXXXEAAPEAADLREVSPAGAE---AEVEAPREEDVAEISSPITGRAERVAGVFHAAVAAENASRLDRCYWARVSERAGRGGVG-----VLDEAFVLTPGLSRDTVGTPR-----PGRSALTPSVSRTSRQLFQDYQK 485
            +D  +A R CSASAIFLALYD  +P  E    +  P +   +DG            RG G+CRLGDLLRQ    V N  + L   A   P   +     D   M  G + ++    K      +  S     SSA   A+G P  +              PPSDPQALPRLGWYLYLLTKDVLGFRSSNA+FV CLNLVLAALGAVVWNSS        PR  YS   S  L+  S AS    GGR+   A   + E                            XXXXXXXXXXXXXXXXXXXXXXXXXXX   YGGEAALLA LSA G+CPA+EVRAMS  VV VIE LL+EGIVVSH +     +               AA  A D+  +  A  E   A V+ PR + +A        RAERVAGVFH +VA EN  RLD CYWARVS+R GRGG G     VLDEAFVLTP L RDTVGTP      P RSALTPSVSRTSRQLFQDYQ+
Sbjct:   56 EDAKTAERLCSASAIFLALYDDDEPTAETEDALP-PTTTMGADG------------RGGGTCRLGDLLRQ--GWVLNQRDSLFPPAIVGPSSAALSNDGDSNNMTNGALPSQAAENKNKSGGADETSDDHDISSAATAAAGFPLPL--------------PPSDPQALPRLGWYLYLLTKDVLGFRSSNAAFVRCLNLVLAALGAVVWNSSSXXXXXSFPRGCYSRRRSSLLTDGSGASGGLEGGREVASAPAADSEPT---------------TAVAAQRAGSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTYGGEAALLAKLSASGRCPAEEVRAMSTHVVEVIEALLQEGIVVSHRAPAPATSSPCTGGEHGTTIATAAAAAAVDVSLMDTAADENAAAPVDVPRHQQLA-------SRAERVAGVFHPSVAGENVDRLDACYWARVSQR-GRGGGGGHRGVVLDEAFVLTPDL-RDTVGTPHYGGSTPRRSALTPSVSRTSRQLFQDYQR 518          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10498.1071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8E5_ECTSI9.790e-10449.82Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHA1_9PHAE5.980e-7549.22RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024599Retinoblastoma-associated protein, N-terminalPFAMPF11934DUF3452coord: 55..204
e-value: 5.6E-26
score: 90.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10498contigM-pyrifera_M_contig10498:3863..9190 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10498.1071.1mRNA_M-pyrifera_M_contig10498.1071.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig10498 3863..9190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig10498.1071.1 ID=prot_M-pyrifera_M_contig10498.1071.1|Name=mRNA_M-pyrifera_M_contig10498.1071.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=485bp
DDNASAARQCSASAIFLALYDQPADEEMPIMELPGSDAKSDGGGGGGGGG
GGGGRGDGSCRLGDLLRQCNTGVKNFMEHLTLVAGRLPPPLSERLQPDLR
VMKEGIVVTKMLHGKYVQIWNERNSLFSSAMLEASGSPNGVSPSVEGEAA
ALSLCPPSDPQALPRLGWYLYLLTKDVLGFRSSNASFVHCLNLVLAALGA
VVWNSSPRYSSCSLSSSSHASPQCVGGRDEGGAAEGEEEAVGIDVGVGAG
AGAASECAGAAGGGDDGGGSGGHGSSGGSDGGGDSGGSGGGGGGDYDYGG
EAALLAALSACGKCPADEVRAMSARVVGVIEVLLREGIVVSHHSSCSTPN
PAAAAAATPAAGGGEAAPEAADLREVSPAGAEAEVEAPREEDVAEISSPI
TGRAERVAGVFHAAVAAENASRLDRCYWARVSERAGRGGVGVLDEAFVLT
PGLSRDTVGTPRPGRSALTPSVSRTSRQLFQDYQK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024599RB_N