mRNA_M-pyrifera_M_contig99769.22933.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99769.22933.1
Unique NamemRNA_M-pyrifera_M_contig99769.22933.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99769.22933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99769contigM-pyrifera_M_contig99769:149..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.4
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog13037.EHJ76388
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032039,GO:0032991,GO:0034470,GO:0034472,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc.von Willebrand factor type A domain
EggNOG OGs28HRX@1,2QQ37@2759,38F3I@33154,3BGU7@33208,3CS0X@33213,3SJSW@50557,41U7T@6656,448PY@7088
COG Functional cat.S
Best tax levelLepidoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.685852-CDS-M-pyrifera_M_contig99769:148..4931622816914.685852-CDS-M-pyrifera_M_contig99769:148..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99769 149..493 +
1692278252.827056-CDS-M-pyrifera_M_contig99769:148..4931692278252.827056-CDS-M-pyrifera_M_contig99769:148..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99769 149..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99769.22933.1prot_M-pyrifera_M_contig99769.22933.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99769 149..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99769.22933.1

>prot_M-pyrifera_M_contig99769.22933.1 ID=prot_M-pyrifera_M_contig99769.22933.1|Name=mRNA_M-pyrifera_M_contig99769.22933.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MPTAVLFDVSLSMGRRLAEVDSTHLELAQAAALHFLQLLQQSQPLEYTAL
VAFDSSTRVLQPFTRDFGLLKSSLFSLRLGDKSSLAAALSALPHSLSCAD
TATDAVLQIVAIVDG
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mRNA from alignment at M-pyrifera_M_contig99769:149..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99769.22933.1 ID=mRNA_M-pyrifera_M_contig99769.22933.1|Name=mRNA_M-pyrifera_M_contig99769.22933.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig99769:149..493+ (Macrocystis pyrifera P11B4 male)
ATGCCGACTGCGGTGCTATTCGATGTGTCGCTGTCGATGGGGCGGCGGTT
GGCGGAGGTGGACAGCACTCACCTGGAGTTGGCGCAGGCGGCGGCGCTCC
ACTTCCTCCAACTTCTGCAGCAGTCGCAGCCACTGGAGTACACAGCGTTG
GTCGCGTTCGACTCCTCGACGAGAGTTCTACAGCCGTTCACGCGCGACTT
TGGCCTTCTCAAGAGCTCTCTCTTTAGCCTGAGGTTGGGCGACAAGAGTT
CGCTCGCCGCCGCTCTCTCAGCGCTCCCCCACTCTCTCTCTTGCGCAGAC
ACAGCGACAGACGCAGTGCTCCAGATCGTGGCCATCGTCGACGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99769:149..493+

>mRNA_M-pyrifera_M_contig99769.22933.1 ID=mRNA_M-pyrifera_M_contig99769.22933.1|Name=mRNA_M-pyrifera_M_contig99769.22933.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig99769:149..493+ (Macrocystis pyrifera P11B4 male)
ATGCCGACTGCGGTGCTATTCGATGTGTCGCTGTCGATGGGGCGGCGGTT
GGCGGAGGTGGACAGCACTCACCTGGAGTTGGCGCAGGCGGCGGCGCTCC
ACTTCCTCCAACTTCTGCAGCAGTCGCAGCCACTGGAGTACACAGCGTTG
GTCGCGTTCGACTCCTCGACGAGAGTTCTACAGCCGTTCACGCGCGACTT
TGGCCTTCTCAAGAGCTCTCTCTTTAGCCTGAGGTTGGGCGACAAGAGTT
CGCTCGCCGCCGCTCTCTCAGCGCTCCCCCACTCTCTCTCTTGCGCAGAC
ACAGCGACAGACGCAGTGCTCCAGATCGTGGCCATCGTCGACGGCATGCC
GACTGCGGTGCTATTCGATGTGTCGCTGTCGATGGGGCGGCGGTTGGCGG
AGGTGGACAGCACTCACCTGGAGTTGGCGCAGGCGGCGGCGCTCCACTTC
CTCCAACTTCTGCAGCAGTCGCAGCCACTGGAGTACACAGCGTTGGTCGC
GTTCGACTCCTCGACGAGAGTTCTACAGCCGTTCACGCGCGACTTTGGCC
TTCTCAAGAGCTCTCTCTTTAGCCTGAGGTTGGGCGACAAGAGTTCGCTC
GCCGCCGCTCTCTCAGCGCTCCCCCACTCTCTCTCTTGCGCAGACACAGC
GACAGACGCAGTGCTCCAGATCGTGGCCATCGTCGACGGC
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