mRNA_M-pyrifera_M_contig99758.22929.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99758.22929.1
Unique NamemRNA_M-pyrifera_M_contig99758.22929.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99758.22929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99758contigM-pyrifera_M_contig99758:436..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score63.9
Seed ortholog evalue3.9e-08
Seed eggNOG ortholog9361.ENSDNOP00000001021
Preferred namePTDSS1
KEGG rclassRC00017,RC02950
KEGG koko:K08729
KEGG ReactionR07377
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0019637,GO:0031984,GO:0042175,GO:0042398,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046474,GO:0046486,GO:0071704,GO:0090407,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.phosphatidylserine biosynthetic process
EggNOG OGs38DY6@33154,3BDHZ@33208,3CUXS@33213,3J61N@40674,484KF@7711,4924X@7742,KOG2735@1,KOG2735@2759
COG Functional cat.I
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size249
Cds size243
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.4592972-UTR-M-pyrifera_M_contig99758:435..4411622816914.4592972-UTR-M-pyrifera_M_contig99758:435..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99758 436..441 +
1692278252.6841402-UTR-M-pyrifera_M_contig99758:435..4411692278252.6841402-UTR-M-pyrifera_M_contig99758:435..441Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99758 436..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.4723408-CDS-M-pyrifera_M_contig99758:441..6841622816914.4723408-CDS-M-pyrifera_M_contig99758:441..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99758 442..684 +
1692278252.7000864-CDS-M-pyrifera_M_contig99758:441..6841692278252.7000864-CDS-M-pyrifera_M_contig99758:441..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99758 442..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99758.22929.1prot_M-pyrifera_M_contig99758.22929.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99758 442..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99758.22929.1

>prot_M-pyrifera_M_contig99758.22929.1 ID=prot_M-pyrifera_M_contig99758.22929.1|Name=mRNA_M-pyrifera_M_contig99758.22929.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
MGLKLERNTTVEKFEYGSKCDLNDWSHILVNIDTYYFEHLFGWVIGGFMI
RSAGNAFMFSISWEVIEWEFMHVFRVFKECW
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mRNA from alignment at M-pyrifera_M_contig99758:436..684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99758.22929.1 ID=mRNA_M-pyrifera_M_contig99758.22929.1|Name=mRNA_M-pyrifera_M_contig99758.22929.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig99758:436..684+ (Macrocystis pyrifera P11B4 male)
CTGGACATGGGGCTCAAGCTGGAGCGCAACACGACTGTGGAGAAGTTCGA
GTACGGATCCAAGTGCGACCTGAACGACTGGAGCCACATCCTGGTGAACA
TCGACACTTACTATTTCGAACACTTGTTCGGCTGGGTCATCGGCGGCTTC
ATGATTCGCTCCGCTGGCAACGCGTTCATGTTCTCCATCTCCTGGGAGGT
CATCGAGTGGGAGTTCATGCACGTCTTCCGCGTCTTCAAGGAGTGCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99758:436..684+

>mRNA_M-pyrifera_M_contig99758.22929.1 ID=mRNA_M-pyrifera_M_contig99758.22929.1|Name=mRNA_M-pyrifera_M_contig99758.22929.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig99758:436..684+ (Macrocystis pyrifera P11B4 male)
ATGGGGCTCAAGCTGGAGCGCAACACGACTGTGGAGAAGTTCGAGTACGG
ATCCAAGTGCGACCTGAACGACTGGAGCCACATCCTGGTGAACATCGACA
CTTACTATTTCGAACACTTGTTCGGCTGGGTCATCGGCGGCTTCATGATT
CGCTCCGCTGGCAACGCGTTCATGTTCTCCATCTCCTGGGAGGTCATCGA
GTGGGAGTTCATGCACGTCTTCCGCGTCTTCAAGGAGTGCTGGATGGGGC
TCAAGCTGGAGCGCAACACGACTGTGGAGAAGTTCGAGTACGGATCCAAG
TGCGACCTGAACGACTGGAGCCACATCCTGGTGAACATCGACACTTACTA
TTTCGAACACTTGTTCGGCTGGGTCATCGGCGGCTTCATGATTCGCTCCG
CTGGCAACGCGTTCATGTTCTCCATCTCCTGGGAGGTCATCGAGTGGGAG
TTCATGCACGTCTTCCGCGTCTTCAAGGAGTGCTGG
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