mRNA_M-pyrifera_M_contig99746.22926.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99746.22926.1
Unique NamemRNA_M-pyrifera_M_contig99746.22926.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99746.22926.1 vs. uniprot
Match: A0A2C5ZZW5_9HYPO (Uncharacterized protein n=1 Tax=Cordyceps sp. RAO-2017 TaxID=2004951 RepID=A0A2C5ZZW5_9HYPO)

HSP 1 Score: 57.0 bits (136), Expect = 6.470e-7
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1 
Query:   28 LKKSLSQLYRALLMLRNYALLNRTALVKLQRHYDDCYSKNDLFVSLEETFGARLTDSVINNAEDVKSLLKTVEELFSHTFNNG--KSAKGLLR--ERKHDTEDLDLYMIGFFVGMSL 366
            LK +L++LYRAL +L++YALLNRTA  KL + YD   +       + E    ++  +   N++ ++  +K VE+L++  F  G  K A G LR   RK   E    ++ GF +G  L
Sbjct:  369 LKLALAELYRALELLKSYALLNRTAFRKLNKKYDKATNARVPLRYMHE----KVNSAWFVNSDVLEGHIKAVEDLYARYFERGNHKLAAGKLRGLSRKSTDESGSSFLNGFLIGTGL 481
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BLAST of mRNA_M-pyrifera_M_contig99746.22926.1 vs. uniprot
Match: A0A3N2PWQ3_9PEZI (EXS-domain-containing protein n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PWQ3_9PEZI)

HSP 1 Score: 52.0 bits (123), Expect = 3.730e-5
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:   28 LKKSLSQLYRALLMLRNYALLNRTALVKLQRHYD---DCYSKNDLFVSLEETFGARLTDSVINNAEDVKSLLKTVEELFSHTF--NNGKSA----KGLLRERKHDTEDLDLYMIGFFVGMSL 366
            LK +L +LYRA+ +L++YALLNRTA  KL + YD   +  S N +    E     +++ S   N+E +   +KTVE+L++  F  +N K A    K L++ RK ++     +  G F+G  L
Sbjct:  418 LKLALQELYRAMELLKSYALLNRTAFRKLNKKYDKAVEARSSNRMRFMNE-----KVSKSWFVNSEVLDRHMKTVEDLYAKYFERDNHKIAVSKLKSLIKRRKDESSSS--FRSGVFLGTGL 532
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99746.22926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2C5ZZW5_9HYPO6.470e-735.04Uncharacterized protein n=1 Tax=Cordyceps sp. RAO-... [more]
A0A3N2PWQ3_9PEZI3.730e-535.25EXS-domain-containing protein n=1 Tax=Sodiomyces a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99746contigM-pyrifera_M_contig99746:79..456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.3367245-CDS-M-pyrifera_M_contig99746:78..4561622816914.3367245-CDS-M-pyrifera_M_contig99746:78..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99746 79..456 -
1692278252.6244385-CDS-M-pyrifera_M_contig99746:78..4561692278252.6244385-CDS-M-pyrifera_M_contig99746:78..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99746 79..456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99746.22926.1prot_M-pyrifera_M_contig99746.22926.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99746 79..456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99746.22926.1

>prot_M-pyrifera_M_contig99746.22926.1 ID=prot_M-pyrifera_M_contig99746.22926.1|Name=mRNA_M-pyrifera_M_contig99746.22926.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MQIKKRGSLLKKSLSQLYRALLMLRNYALLNRTALVKLQRHYDDCYSKND
LFVSLEETFGARLTDSVINNAEDVKSLLKTVEELFSHTFNNGKSAKGLLR
ERKHDTEDLDLYMIGFFVGMSLPLML
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mRNA from alignment at M-pyrifera_M_contig99746:79..456-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99746.22926.1 ID=mRNA_M-pyrifera_M_contig99746.22926.1|Name=mRNA_M-pyrifera_M_contig99746.22926.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig99746:79..456- (Macrocystis pyrifera P11B4 male)
ATGCAGATCAAGAAGAGGGGCTCGCTCCTCAAGAAATCCCTGTCTCAGCT
CTACAGGGCACTGCTCATGCTGAGAAACTACGCCCTTCTCAACAGGACTG
CATTGGTCAAGCTCCAGCGCCATTACGACGATTGCTACTCCAAGAACGAC
CTCTTTGTCTCGCTCGAGGAGACTTTCGGTGCCAGGCTCACTGACTCTGT
CATCAACAATGCAGAAGATGTGAAGTCCCTTCTGAAGACCGTGGAGGAGC
TGTTCAGCCACACCTTCAACAACGGCAAGAGCGCCAAGGGCCTCCTTCGC
GAGCGCAAGCACGATACCGAGGACTTGGACCTCTACATGATCGGCTTCTT
CGTGGGCATGTCTCTCCCGCTGATGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99746:79..456-

>mRNA_M-pyrifera_M_contig99746.22926.1 ID=mRNA_M-pyrifera_M_contig99746.22926.1|Name=mRNA_M-pyrifera_M_contig99746.22926.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig99746:79..456- (Macrocystis pyrifera P11B4 male)
ATGCAGATCAAGAAGAGGGGCTCGCTCCTCAAGAAATCCCTGTCTCAGCT
CTACAGGGCACTGCTCATGCTGAGAAACTACGCCCTTCTCAACAGGACTG
CATTGGTCAAGCTCCAGCGCCATTACGACGATTGCTACTCCAAGAACGAC
CTCTTTGTCTCGCTCGAGGAGACTTTCGGTGCCAGGCTCACTGACTCTGT
CATCAACAATGCAGAAGATGTGAAGTCCCTTCTGAAGACCGTGGAGGAGC
TGTTCAGCCACACCTTCAACAACGGCAAGAGCGCCAAGGGCCTCCTTCGC
GAGCGCAAGCACGATACCGAGGACTTGGACCTCTACATGATCGGCTTCTT
CGTGGGCATGTCTCTCCCGCTGATGCTCATGCAGATCAAGAAGAGGGGCT
CGCTCCTCAAGAAATCCCTGTCTCAGCTCTACAGGGCACTGCTCATGCTG
AGAAACTACGCCCTTCTCAACAGGACTGCATTGGTCAAGCTCCAGCGCCA
TTACGACGATTGCTACTCCAAGAACGACCTCTTTGTCTCGCTCGAGGAGA
CTTTCGGTGCCAGGCTCACTGACTCTGTCATCAACAATGCAGAAGATGTG
AAGTCCCTTCTGAAGACCGTGGAGGAGCTGTTCAGCCACACCTTCAACAA
CGGCAAGAGCGCCAAGGGCCTCCTTCGCGAGCGCAAGCACGATACCGAGG
ACTTGGACCTCTACATGATCGGCTTCTTCGTGGGCATGTCTCTCCCGCTG
ATGCTC
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