mRNA_M-pyrifera_M_contig9971.22917.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9971.22917.1
Unique NamemRNA_M-pyrifera_M_contig9971.22917.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9971.22917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9971contigM-pyrifera_M_contig9971:999..1634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-05_005430.1
Exons1
Model size636
Cds size636
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.872104-CDS-M-pyrifera_M_contig9971:998..16341622816913.872104-CDS-M-pyrifera_M_contig9971:998..1634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9971 999..1634 +
1692278252.3392012-CDS-M-pyrifera_M_contig9971:998..16341692278252.3392012-CDS-M-pyrifera_M_contig9971:998..1634Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9971 999..1634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9971.22917.1prot_M-pyrifera_M_contig9971.22917.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9971 999..1634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9971.22917.1

>prot_M-pyrifera_M_contig9971.22917.1 ID=prot_M-pyrifera_M_contig9971.22917.1|Name=mRNA_M-pyrifera_M_contig9971.22917.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
MAAAAGGHLEVLRWARENGCPWDEYTSWKAASGGHLELLRWARENGCPWD
ATTCKRAARGGHLGVLRWARENGCPWDGSTCAGAAEGGHLSALRWARNNG
CPWDERVCRVAAHGGHLDVLRWARDNGCPWDQKTCTGAAEGGHLEVLRWA
RSKGCHWDQRTCTGAAEEGHLGVLRWARANGCPWDEDTCRGAAMGRHGGL
LEWARANGCPG*
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mRNA from alignment at M-pyrifera_M_contig9971:999..1634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9971.22917.1 ID=mRNA_M-pyrifera_M_contig9971.22917.1|Name=mRNA_M-pyrifera_M_contig9971.22917.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig9971:999..1634+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCGGCGGCGGGGGGTCACCTCGAGGTGCTCCGGTGGGCCAGAGA
AAACGGGTGCCCCTGGGACGAGTACACCTCCTGGAAGGCGGCCTCGGGGG
GCCACTTGGAACTCCTCCGATGGGCCAGGGAGAACGGCTGCCCCTGGGAC
GCGACGACCTGCAAGCGCGCCGCGAGAGGGGGACACCTGGGCGTGCTCCG
CTGGGCTAGAGAGAACGGCTGTCCCTGGGATGGGTCTACCTGCGCGGGCG
CCGCCGAGGGAGGCCACCTCTCCGCGCTCCGGTGGGCCAGGAACAACGGG
TGCCCCTGGGACGAGCGGGTGTGTCGGGTCGCCGCGCACGGGGGGCACCT
GGATGTGCTCCGGTGGGCGCGCGACAACGGCTGCCCCTGGGATCAGAAGA
CGTGCACGGGGGCGGCGGAGGGGGGTCACCTTGAGGTGTTGCGCTGGGCG
CGGAGCAAGGGGTGTCATTGGGATCAGAGGACGTGTACGGGGGCGGCGGA
GGAGGGGCATCTCGGGGTGTTGCGGTGGGCGAGGGCAAACGGGTGTCCGT
GGGACGAGGATACGTGTAGGGGCGCGGCGATGGGGCGCCATGGCGGGTTG
TTGGAGTGGGCGCGGGCTAATGGTTGCCCCGGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9971:999..1634+

>mRNA_M-pyrifera_M_contig9971.22917.1 ID=mRNA_M-pyrifera_M_contig9971.22917.1|Name=mRNA_M-pyrifera_M_contig9971.22917.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig9971:999..1634+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCGGCGGCGGGGGGTCACCTCGAGGTGCTCCGGTGGGCCAGAGA
AAACGGGTGCCCCTGGGACGAGTACACCTCCTGGAAGGCGGCCTCGGGGG
GCCACTTGGAACTCCTCCGATGGGCCAGGGAGAACGGCTGCCCCTGGGAC
GCGACGACCTGCAAGCGCGCCGCGAGAGGGGGACACCTGGGCGTGCTCCG
CTGGGCTAGAGAGAACGGCTGTCCCTGGGATGGGTCTACCTGCGCGGGCG
CCGCCGAGGGAGGCCACCTCTCCGCGCTCCGGTGGGCCAGGAACAACGGG
TGCCCCTGGGACGAGCGGGTGTGTCGGGTCGCCGCGCACGGGGGGCACCT
GGATGTGCTCCGGTGGGCGCGCGACAACGGCTGCCCCTGGGATCAGAAGA
CGTGCACGGGGGCGGCGGAGGGGGGTCACCTTGAGGTGTTGCGCTGGGCG
CGGAGCAAGGGGTGTCATTGGGATCAGAGGACGTGTACGGGGGCGGCGGA
GGAGGGGCATCTCGGGGTGTTGCGGTGGGCGAGGGCAAACGGGTGTCCGT
GGGACGAGGATACGTGTAGGGGCGCGGCGATGGGGCGCCATGGCGGGTTG
TTGGAGTGGGCGCGGGCTAATGGTTGCCCCGGTTGAATGGCGGCGGCGGC
GGGGGGTCACCTCGAGGTGCTCCGGTGGGCCAGAGAAAACGGGTGCCCCT
GGGACGAGTACACCTCCTGGAAGGCGGCCTCGGGGGGCCACTTGGAACTC
CTCCGATGGGCCAGGGAGAACGGCTGCCCCTGGGACGCGACGACCTGCAA
GCGCGCCGCGAGAGGGGGACACCTGGGCGTGCTCCGCTGGGCTAGAGAGA
ACGGCTGTCCCTGGGATGGGTCTACCTGCGCGGGCGCCGCCGAGGGAGGC
CACCTCTCCGCGCTCCGGTGGGCCAGGAACAACGGGTGCCCCTGGGACGA
GCGGGTGTGTCGGGTCGCCGCGCACGGGGGGCACCTGGATGTGCTCCGGT
GGGCGCGCGACAACGGCTGCCCCTGGGATCAGAAGACGTGCACGGGGGCG
GCGGAGGGGGGTCACCTTGAGGTGTTGCGCTGGGCGCGGAGCAAGGGGTG
TCATTGGGATCAGAGGACGTGTACGGGGGCGGCGGAGGAGGGGCATCTCG
GGGTGTTGCGGTGGGCGAGGGCAAACGGGTGTCCGTGGGACGAGGATACG
TGTAGGGGCGCGGCGATGGGGCGCCATGGCGGGTTGTTGGAGTGGGCGCG
GGCTAATGGTTGCCCCGGTTGA
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