mRNA_M-pyrifera_M_contig99699.22916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99699.22916.1
Unique NamemRNA_M-pyrifera_M_contig99699.22916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: A0A497RDA8_9ARCH (Uncharacterized protein n=3 Tax=Candidatus Heimdallarchaeota archaeon TaxID=2026747 RepID=A0A497RDA8_9ARCH)

HSP 1 Score: 125 bits (315), Expect = 3.160e-33
Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAECPTASLVLVGNKCDLVERRQVKTSEAKEFAAATAP--GTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAER 480
            +Y  D F E+ K TIG  F  K   V+ +    RI+CQ+WDT GQE++  I   ++R A+G ++VFDVTN +S E ++ W T+I A C    L++VGNK DL E+R +KT E K +A       G  +PY+ETSA+TG  +  VF  +  M+V ++     R
Sbjct:   30 RYAEDKFQENYKMTIGVDFTIKHEVVKDK----RIKCQIWDTGGQEKFSRIRPLYYRGALGGLVVFDVTNRESFEHLDKWFTEIVANCKKIPLIIVGNKIDLEEQRAIKTEEGKAYAKKKTKELGVKIPYLETSAKTGETIKKVFRELITMMVQEADETIRR 187          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: A0A1J4KCQ3_9EUKA (Small GTP-binding protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KCQ3_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.760e-28
Identity = 65/161 (40.37%), Postives = 98/161 (60.87%), Query Frame = 1
Query:    7 VHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAEC-PTASLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAERIP 486
            V D F E++++TIG  F +  +TV  R    R++ Q+WDT+GQER+R+I + ++RNAVG +LVFD+T  KS + +  W   +   C P+A + L+GNK DL ++R V  +EA+ FA+       + Y+ETSA+ G  V   F  +A  IV  S+GL    P
Sbjct:   27 VEDTFTEESQSTIGVEFDSTMITVEDR----RVKLQIWDTAGQERFRSIAKAYYRNAVGVILVFDITERKSFDDLSSWLNDVHTLCDPSAVIQLIGNKADLTDQRAVTLTEAEAFAS----HQHMQYLETSAKAGDNVREAFVRVAGNIV--SKGLRPSNP 177          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: A0A6I8PW45_XENTR (Small monomeric GTPase n=6 Tax=Anura TaxID=8342 RepID=A0A6I8PW45_XENTR)

HSP 1 Score: 113 bits (283), Expect = 2.170e-28
Identity = 66/163 (40.49%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEG------RIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIA--AECPTASLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQ 465
            QY    F      T+G  F  K V  R+   +G      R+  QLWDT+GQER+R++T  FFR+A+G +L+FD+TN +S   +  W +Q+   A C    +VL GNKCDL E+R VK  EAKEFA        +PY ETSA  GT V+   E +  +I+ + +
Sbjct:   28 QYTDAKFNSKFITTVGIDFREKRVVYRSNGPDGISGRGQRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWMSQLQVHAYCENPDIVLCGNKCDLDEQRAVKEEEAKEFAEKYG----IPYFETSAAIGTNVNKAVETLLDLIMKRME 186          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: A0A167P3H5_PHYB8 (Uncharacterized protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167P3H5_PHYB8)

HSP 1 Score: 114 bits (284), Expect = 2.410e-28
Identity = 67/154 (43.51%), Postives = 95/154 (61.69%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAEC-PTASLVLVGNKCDLVER-RQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVN 456
            ++ +D F  ++K+TIG  FATK++ ++       I+ Q+WDTSGQERYRAIT  ++R AVGA+LV+D+T   S + IE+W  ++     P  +L+LVGNK DL E  R V T EAKE+AA     + + + ETSA   T VS  F    + I N
Sbjct:   28 RFTNDEFNLESKSTIGVEFATKNIKIKNHT----IKAQIWDTSGQERYRAITGAYYRGAVGALLVYDITRQSSFQNIEHWLKELRDHADPNIALMLVGNKSDLEETSRAVSTEEAKEYAA----DSKMLFFETSALDSTNVSQAFYTAFEEIYN 173          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: V8NHV0_OPHHA (Ras-related protein Rab-25 (Fragment) n=4 Tax=Elapidae TaxID=8602 RepID=V8NHV0_OPHHA)

HSP 1 Score: 114 bits (284), Expect = 2.530e-28
Identity = 63/163 (38.65%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAECP-TASLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAERIP 486
            ++  + F  D++ TIG  F+T+ + V    G+  ++ Q+WDT+G ERYRAIT  ++R AVGA+LVFD+T  ++ + +E W  ++      T  ++LVGNK DL + R+V T EAK +A        + +VETSA   T V L FE I + I N+ Q   ++ P
Sbjct:   40 RFTRNEFNHDSRTTIGVEFSTRTILV----GDALVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDITKHQTYDVVERWLKELYDHAEATIVVMLVGNKTDLAQAREVPTEEAKMYA----ENNGLLFVETSALDSTNVELAFETILRDIFNKEQKKKQKSP 194          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: UPI000D6A4E3E (ras-related protein Rab-25 n=1 Tax=Python bivittatus TaxID=176946 RepID=UPI000D6A4E3E)

HSP 1 Score: 113 bits (283), Expect = 5.590e-28
Identity = 63/163 (38.65%), Postives = 97/163 (59.51%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAECP-TASLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAERIP 486
            ++  + F  D++ TIG  F+T+ + V    G+  ++ Q+WDT+G ERYRAIT  ++R AVGA+LVFD+T  ++ + +E W  ++      T  ++LVGNK DL + R+V T EAK +A        + +VETSA   T V L FE I + I N+ Q   ++ P
Sbjct:   59 RFTRNEFSHDSRTTIGVEFSTRTILV----GDALVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDITKHQTYDVVERWLKELYDHAEATIVVMLVGNKMDLAQAREVPTEEAKMYA----ENNGLLFVETSALDSTNVELAFETILRDIFNKVQKQKQKSP 213          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: UPI0012D412BC (ras-related protein Rab-27A n=1 Tax=Contarinia nasturtii TaxID=265458 RepID=UPI0012D412BC)

HSP 1 Score: 113 bits (282), Expect = 5.800e-28
Identity = 62/162 (38.27%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQ--IAAECPTASLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAER 480
            QY    F  +  +T+G  F  K +  +T     R+  Q WDTSGQER+R++T  F+R+AVG +LVFD+TN KS   + YW  Q  I A C    +VLVGNK D+  +R +    A+ FA        +PY+ETSA TG  V   F+ + ++++N+ +    R
Sbjct:   29 QYTDGVFRSNFSSTVGVDFREKRMLYKTNGRNYRVHLQCWDTSGQERFRSLTTAFYRDAVGFLLVFDLTNEKSFLEVVYWMEQLKIHAYCDCPDIVLVGNKMDMERQRIITEVRARHFA----QKYNLPYIETSAVTGENVKQAFDILLELVMNRLENAVFR 186          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: A0A7K4K4I8_9AVES (Small monomeric GTPase (Fragment) n=2 Tax=Crypturellus TaxID=48395 RepID=A0A7K4K4I8_9AVES)

HSP 1 Score: 112 bits (281), Expect = 6.120e-28
Identity = 64/170 (37.65%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEG------RIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAE--CPTASLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAERIP 486
            +Y  + F      T+G  F  K V   +R   G      ++  QLWDT+GQER+R++T  FFR+A+G +L+FD+T+ +S   +  W +Q+ A   C    +VLVGNK DL ++R+V   +AKE A        +PYVETSA TG  V+   EA+  +++ + +  AER P
Sbjct:   28 RYTDNKFNPKFITTVGIDFREKRVVYSSRGANGAPGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLVGNKADLADQREVNERQAKELADKYG----IPYVETSAATGRAVAEAVEALLDLVMRRMEQCAERTP 193          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: A0A452IL31_9SAUR (RAB25, member RAS oncogene family n=15 Tax=Testudines TaxID=8459 RepID=A0A452IL31_9SAUR)

HSP 1 Score: 112 bits (280), Expect = 7.440e-28
Identity = 63/163 (38.65%), Postives = 94/163 (57.67%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAECPTASLV-LVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMIVNQSQGLAERIP 486
            ++  + F  D++ TIG  F+T+ + V    G   ++ Q+WDT+G ERYRAIT  ++R AVGA+LVFD+T  ++ + +E W  ++        +V LVGNK DL + R+V T EAK FA        + ++ETSA   T V   FE I + I N+ Q   +R P
Sbjct:   30 RFTRNEFNHDSRTTIGVEFSTRTIMV----GNAMVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDITKHQTYDVVERWLKELYDHAEATIIVMLVGNKTDLAQAREVPTEEAKMFA----ENNGLLFIETSALDSTNVEQAFETILRDIFNKVQKQQQRSP 184          
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Match: S2KK13_MUCC1 (Ras-like protein Rab-11A n=5 Tax=Mucor TaxID=4830 RepID=S2KK13_MUCC1)

HSP 1 Score: 112 bits (281), Expect = 7.610e-28
Identity = 63/151 (41.72%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRAITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAECPTA-SLVLVGNKCDLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMI 450
            ++ +D F  ++K+TIG  FATK++ +    GE  I+ Q+WDTSGQERYRAIT  ++R AVGA+LV+D+T   S + I++W  ++        SL+LVGNK DLV+ R V T EA ++A      + + + ETSA   T V   F+ + + I
Sbjct:   28 RFTNDEFNLESKSTIGVEFATKNIKI----GEHTIKAQIWDTSGQERYRAITGAYYRGAVGALLVYDITRQSSFQNIDHWLKELRDHSDDKISLMLVGNKVDLVDSRAVSTEEAGQYA----EDSEMLFFETSALDATNVDSAFKTVFERI 170          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99699.22916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A497RDA8_9ARCH3.160e-3340.74Uncharacterized protein n=3 Tax=Candidatus Heimdal... [more]
A0A1J4KCQ3_9EUKA1.760e-2840.37Small GTP-binding protein n=1 Tax=Tritrichomonas f... [more]
A0A6I8PW45_XENTR2.170e-2840.49Small monomeric GTPase n=6 Tax=Anura TaxID=8342 Re... [more]
A0A167P3H5_PHYB82.410e-2843.51Uncharacterized protein n=1 Tax=Phycomyces blakesl... [more]
V8NHV0_OPHHA2.530e-2838.65Ras-related protein Rab-25 (Fragment) n=4 Tax=Elap... [more]
UPI000D6A4E3E5.590e-2838.65ras-related protein Rab-25 n=1 Tax=Python bivittat... [more]
UPI0012D412BC5.800e-2838.27ras-related protein Rab-27A n=1 Tax=Contarinia nas... [more]
A0A7K4K4I8_9AVES6.120e-2837.65Small monomeric GTPase (Fragment) n=2 Tax=Crypture... [more]
A0A452IL31_9SAUR7.440e-2838.65RAB25, member RAS oncogene family n=15 Tax=Testudi... [more]
S2KK13_MUCC17.610e-2841.72Ras-like protein Rab-11A n=5 Tax=Mucor TaxID=4830 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99699contigM-pyrifera_M_contig99699:11..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1.2e-24
Seed eggNOG ortholog5888.CAK56019
KEGG koko:K07877,ko:K07878
KEGG Pathwayko04152,map04152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab subfamily of small GTPases
EggNOG OGs3ZDYP@5878,COG1100@1,KOG0098@2759
COG Functional cat.U
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size507
Cds size507
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.8396847-CDS-M-pyrifera_M_contig99699:10..5171622816913.8396847-CDS-M-pyrifera_M_contig99699:10..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99699 11..517 +
1692278252.3242733-CDS-M-pyrifera_M_contig99699:10..5171692278252.3242733-CDS-M-pyrifera_M_contig99699:10..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99699 11..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99699.22916.1prot_M-pyrifera_M_contig99699.22916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99699 11..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99699.22916.1

>prot_M-pyrifera_M_contig99699.22916.1 ID=prot_M-pyrifera_M_contig99699.22916.1|Name=mRNA_M-pyrifera_M_contig99699.22916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=169bp
QYVHDFFPEDTKATIGAAFATKDVTVRTRKGEGRIRCQLWDTSGQERYRA
ITRGFFRNAVGAVLVFDVTNAKSLEAIEYWRTQIAAECPTASLVLVGNKC
DLVERRQVKTSEAKEFAAATAPGTTVPYVETSARTGTGVSLVFEAIAQMI
VNQSQGLAERIPAMPTTL*
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mRNA from alignment at M-pyrifera_M_contig99699:11..517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99699.22916.1 ID=mRNA_M-pyrifera_M_contig99699.22916.1|Name=mRNA_M-pyrifera_M_contig99699.22916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=507bp|location=Sequence derived from alignment at M-pyrifera_M_contig99699:11..517+ (Macrocystis pyrifera P11B4 male)
CAGTATGTGCACGATTTCTTTCCTGAGGACACGAAGGCGACGATTGGGGC TGCGTTTGCGACCAAGGACGTGACAGTTCGGACGCGGAAGGGGGAGGGTC GGATTCGGTGCCAATTGTGGGATACGAGTGGGCAGGAAAGGTATCGGGCG ATCACTCGCGGATTTTTTCGCAACGCTGTGGGGGCAGTGTTGGTGTTTGA CGTGACCAACGCCAAGAGTCTGGAGGCGATCGAGTACTGGCGGACGCAGA TCGCTGCGGAATGCCCCACGGCCTCGCTGGTGCTGGTGGGGAACAAGTGC GACCTGGTGGAGCGAAGACAGGTCAAAACCTCAGAGGCCAAGGAATTCGC CGCCGCCACTGCGCCAGGCACAACCGTCCCTTATGTCGAAACCAGCGCCA GAACTGGCACCGGAGTCAGCCTCGTCTTCGAGGCCATCGCCCAAATGATC GTCAACCAGTCACAGGGACTCGCAGAGAGAATCCCCGCAATGCCTACCAC ACTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99699:11..517+

>mRNA_M-pyrifera_M_contig99699.22916.1 ID=mRNA_M-pyrifera_M_contig99699.22916.1|Name=mRNA_M-pyrifera_M_contig99699.22916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1014bp|location=Sequence derived from alignment at M-pyrifera_M_contig99699:11..517+ (Macrocystis pyrifera P11B4 male)
CAGTATGTGCACGATTTCTTTCCTGAGGACACGAAGGCGACGATTGGGGC
TGCGTTTGCGACCAAGGACGTGACAGTTCGGACGCGGAAGGGGGAGGGTC
GGATTCGGTGCCAATTGTGGGATACGAGTGGGCAGGAAAGGTATCGGGCG
ATCACTCGCGGATTTTTTCGCAACGCTGTGGGGGCAGTGTTGGTGTTTGA
CGTGACCAACGCCAAGAGTCTGGAGGCGATCGAGTACTGGCGGACGCAGA
TCGCTGCGGAATGCCCCACGGCCTCGCTGGTGCTGGTGGGGAACAAGTGC
GACCTGGTGGAGCGAAGACAGGTCAAAACCTCAGAGGCCAAGGAATTCGC
CGCCGCCACTGCGCCAGGCACAACCGTCCCTTATGTCGAAACCAGCGCCA
GAACTGGCACCGGAGTCAGCCTCGTCTTCGAGGCCATCGCCCAAATGATC
GTCAACCAGTCACAGGGACTCGCAGAGAGAATCCCCGCAATGCCTACCAC
ACTCTGACAGTATGTGCACGATTTCTTTCCTGAGGACACGAAGGCGACGA
TTGGGGCTGCGTTTGCGACCAAGGACGTGACAGTTCGGACGCGGAAGGGG
GAGGGTCGGATTCGGTGCCAATTGTGGGATACGAGTGGGCAGGAAAGGTA
TCGGGCGATCACTCGCGGATTTTTTCGCAACGCTGTGGGGGCAGTGTTGG
TGTTTGACGTGACCAACGCCAAGAGTCTGGAGGCGATCGAGTACTGGCGG
ACGCAGATCGCTGCGGAATGCCCCACGGCCTCGCTGGTGCTGGTGGGGAA
CAAGTGCGACCTGGTGGAGCGAAGACAGGTCAAAACCTCAGAGGCCAAGG
AATTCGCCGCCGCCACTGCGCCAGGCACAACCGTCCCTTATGTCGAAACC
AGCGCCAGAACTGGCACCGGAGTCAGCCTCGTCTTCGAGGCCATCGCCCA
AATGATCGTCAACCAGTCACAGGGACTCGCAGAGAGAATCCCCGCAATGC
CTACCACACTCTGA
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