mRNA_M-pyrifera_M_contig99691.22913.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99691.22913.1
Unique NamemRNA_M-pyrifera_M_contig99691.22913.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A0L0HC42_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HC42_SPIPD)

HSP 1 Score: 110 bits (274), Expect = 5.670e-29
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   25 YWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEI----PTKEAPRSKGKGKWTVSSYGLS 291
            YWTVSEG A+  T +CRECR +I K E +  RDGRK+RL YHPECFSG+ADPRTQ GSS+H  R       PT  AP  KG GKW+V+ YG S
Sbjct:    6 YWTVSEGPAIR-TQTCRECRRTIYKDEHVKVRDGRKIRLFYHPECFSGDADPRTQAGSSYHDPRYSTARLAPT--APPVKGHGKWSVNQYGYS 95          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A0G4GTW4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GTW4_9ALVE)

HSP 1 Score: 107 bits (268), Expect = 4.240e-28
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   25 YWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEIPTKEAPRSKGKGKWTVSSYGLSGAA 300
            YWTVS+GVAV     CREC+  I KG  +I RDGRK+RL YHP+CFSGEADPRTQ  SSF QK   + +++AP  KG+GKW+ + YG + AA
Sbjct:    3 YWTVSQGVAVRNGHMCRECKSYIFKGSSVIVRDGRKIRLFYHPQCFSGEADPRTQTHSSF-QKFKGVTSEKAPLEKGRGKWSTT-YGYNDAA 92          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A0G4EZX9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EZX9_VITBC)

HSP 1 Score: 106 bits (265), Expect = 4.440e-27
Identity = 55/93 (59.14%), Postives = 63/93 (67.74%), Query Frame = 1
Query:   16 EVPYWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEIP-TKEAPRSKGKGKWTVSSYGLS 291
            E  YWTVS GVAV     CRECRG I KGE +I RDGRK+RL YHPECFSG+ADPRTQ  SS+   +     +  AP +KG GKW+ S YG S
Sbjct:    2 EGDYWTVSTGVAVRNGHMCRECRGYIMKGETMIVRDGRKIRLFYHPECFSGDADPRTQTTSSYCNPKYNTAISSHAPATKGYGKWSTS-YGYS 93          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A2C6L8F3_9APIC (Uncharacterized protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L8F3_9APIC)

HSP 1 Score: 110 bits (274), Expect = 4.590e-27
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   22 PYWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLE--IPTKEAPRSKGKGKWTVSSYGL 288
            PYWTVS G+      +CREC+  I K E  + RDGRK+R  YHPECFSG+ADPRTQ GSS H  R    +    AP SKG GKW+V SYGL
Sbjct:   85 PYWTVSRGIVNRFGHACRECKKGIGKNEEAVVRDGRKLRFFYHPECFSGDADPRTQTGSSAHDVRFRAMLSNTTAPPSKGTGKWSVQSYGL 175          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A7S0VGT0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGT0_9CRYP)

HSP 1 Score: 103 bits (258), Expect = 1.210e-26
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   28 WTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEIPT--KEAPRSKGKGKWTVSSYG 285
            W++  GVAV    +CRECR  I KG+ +++RDGRK+R++YH ECFSG+ADPRTQ GSS ++ RL   +   +AP SKG+GKW+  SYG
Sbjct:    1 WSLGRGVAVRNGWTCRECRKPIFKGDPMVSRDGRKIRMMYHSECFSGDADPRTQEGSSANEGRLPATSFSPKAPASKGRGKWSAGSYG 88          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A507EC56_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EC56_9FUNG)

HSP 1 Score: 106 bits (265), Expect = 9.040e-26
Identity = 54/91 (59.34%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   25 YWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEIP--TKEAPRSKGKGKWTVSSYGLS 291
            YWTVSEG A+  T +CRECRG+I K E +  RDGRK+RL YHP CFSG ADPRTQ  SSFH  R      +  AP  KG GKW+V  YG S
Sbjct:    3 YWTVSEGKAIK-TQTCRECRGTIHKDEDVKVRDGRKIRLFYHPTCFSGSADPRTQARSSFHDPRYASAHLSTAAPPVKGHGKWSVEQYGYS 92          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: F4NVW3_BATDJ (Uncharacterized protein n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4NVW3_BATDJ)

HSP 1 Score: 103 bits (257), Expect = 1.000e-25
Identity = 52/89 (58.43%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   25 YWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEIPT--KEAPRSKGKGKWTVSSYG 285
            YWTVSEG +V    +CRECR  I  G+ II RDGRK+RL YHPECFSG+ADPRTQ+ SS++  R         AP  KG GKW+V SYG
Sbjct:    4 YWTVSEGNSVRR-WTCRECRKDIHIGDHIIVRDGRKIRLAYHPECFSGDADPRTQKSSSYYDSRWPDTCFRDHAPEFKGHGKWSVISYG 91          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A7S1PHY7_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1PHY7_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 8.130e-23
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   16 EVPYWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRLEIP---TKEAPRSKGKGKWTVSSYGLSG 294
            E  YWTVS GVA     SCREC+ +I KG  I  RD RK+RLVYH  CFSG++DPRTQ  SSF   + +I    ++ AP+ KG GKW+ S  G  G
Sbjct:   34 ESTYWTVSLGVA-NRIFSCRECKQTIMKGTPIFVRDARKIRLVYHKICFSGDSDPRTQANSSFRSGKDDIRKAISERAPKEKGYGKWSTSHIGFVG 128          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A817JN20_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817JN20_9BILA)

HSP 1 Score: 94.7 bits (234), Expect = 9.150e-23
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   25 YWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKR---LEIPTKEAPRSKGKGKWTVSSYGLSG 294
            YWT++ G A     SCREC   I +GE I+ RDGRK+RL+YH  C+SG++DPRTQ GSS++  +         +AP  KG GKW+ S YG  G
Sbjct:    6 YWTITHGHANRTGWSCRECHAVIYQGEPIVIRDGRKLRLMYHERCYSGDSDPRTQTGSSYYDNKWINAHSIQGKAPSVKGYGKWSCSEYGYKG 98          
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Match: A0A1R2BX22_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BX22_9CILI)

HSP 1 Score: 84.7 bits (208), Expect = 1.790e-19
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   25 YWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYHPECFSGEADPRTQRGSSFHQKRL 219
            YWT+  GV      +CREC   I+KG++++ RDGR++RL YH ECFSG ADPRTQ GSS+++ R+
Sbjct:    3 YWTIGYGVQQRFGHNCRECHMPIEKGDKVVYRDGRRIRLFYHNECFSGTADPRTQSGSSYNEGRM 67          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99691.22913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A0L0HC42_SPIPD5.670e-2960.22Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A0G4GTW4_9ALVE4.240e-2858.70Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A0G4EZX9_VITBC4.440e-2759.14Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A2C6L8F3_9APIC4.590e-2757.14Uncharacterized protein n=1 Tax=Cystoisospora suis... [more]
A0A7S0VGT0_9CRYP1.210e-2654.55Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A507EC56_9FUNG9.040e-2659.34Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
F4NVW3_BATDJ1.000e-2558.43Uncharacterized protein n=2 Tax=Batrachochytrium d... [more]
A0A7S1PHY7_9EUKA8.130e-2352.08Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A817JN20_9BILA9.150e-2348.39Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A1R2BX22_9CILI1.790e-1953.85Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99691contigM-pyrifera_M_contig99691:362..673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score112.1
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog109760.SPPG_06044T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6M4@1,2SDAD@2759,3ARV4@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.717207-CDS-M-pyrifera_M_contig99691:361..6731622816913.717207-CDS-M-pyrifera_M_contig99691:361..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99691 362..673 +
1692278252.2768772-CDS-M-pyrifera_M_contig99691:361..6731692278252.2768772-CDS-M-pyrifera_M_contig99691:361..673Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99691 362..673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99691.22913.1prot_M-pyrifera_M_contig99691.22913.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99691 362..673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99691.22913.1

>prot_M-pyrifera_M_contig99691.22913.1 ID=prot_M-pyrifera_M_contig99691.22913.1|Name=mRNA_M-pyrifera_M_contig99691.22913.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MSKGSEVPYWTVSEGVAVTATLSCRECRGSIKKGERIIARDGRKVRLVYH
PECFSGEADPRTQRGSSFHQKRLEIPTKEAPRSKGKGKWTVSSYGLSGAA
ASTP
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mRNA from alignment at M-pyrifera_M_contig99691:362..673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99691.22913.1 ID=mRNA_M-pyrifera_M_contig99691.22913.1|Name=mRNA_M-pyrifera_M_contig99691.22913.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig99691:362..673+ (Macrocystis pyrifera P11B4 male)
ATGAGCAAGGGGTCGGAGGTGCCCTATTGGACTGTGAGTGAAGGCGTGGC AGTGACGGCGACCTTGTCTTGTAGAGAGTGTCGTGGGTCGATCAAGAAAG GAGAACGGATCATCGCGAGAGATGGGAGGAAGGTGCGGCTAGTGTATCAT CCTGAGTGCTTTTCGGGAGAGGCAGATCCAAGGACACAGAGGGGTAGCTC GTTTCATCAGAAACGCCTCGAAATTCCAACGAAAGAAGCGCCGAGATCAA AAGGGAAGGGGAAATGGACAGTTTCCTCCTATGGGCTGAGTGGGGCCGCT GCATCCACTCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99691:362..673+

>mRNA_M-pyrifera_M_contig99691.22913.1 ID=mRNA_M-pyrifera_M_contig99691.22913.1|Name=mRNA_M-pyrifera_M_contig99691.22913.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig99691:362..673+ (Macrocystis pyrifera P11B4 male)
ATGAGCAAGGGGTCGGAGGTGCCCTATTGGACTGTGAGTGAAGGCGTGGC
AGTGACGGCGACCTTGTCTTGTAGAGAGTGTCGTGGGTCGATCAAGAAAG
GAGAACGGATCATCGCGAGAGATGGGAGGAAGGTGCGGCTAGTGTATCAT
CCTGAGTGCTTTTCGGGAGAGGCAGATCCAAGGACACAGAGGGGTAGCTC
GTTTCATCAGAAACGCCTCGAAATTCCAACGAAAGAAGCGCCGAGATCAA
AAGGGAAGGGGAAATGGACAGTTTCCTCCTATGGGCTGAGTGGGGCCGCT
GCATCCACTCCAATGAGCAAGGGGTCGGAGGTGCCCTATTGGACTGTGAG
TGAAGGCGTGGCAGTGACGGCGACCTTGTCTTGTAGAGAGTGTCGTGGGT
CGATCAAGAAAGGAGAACGGATCATCGCGAGAGATGGGAGGAAGGTGCGG
CTAGTGTATCATCCTGAGTGCTTTTCGGGAGAGGCAGATCCAAGGACACA
GAGGGGTAGCTCGTTTCATCAGAAACGCCTCGAAATTCCAACGAAAGAAG
CGCCGAGATCAAAAGGGAAGGGGAAATGGACAGTTTCCTCCTATGGGCTG
AGTGGGGCCGCTGCATCCACTCCA
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