mRNA_M-pyrifera_M_contig99657.22904.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99657.22904.1
Unique NamemRNA_M-pyrifera_M_contig99657.22904.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A7S4IQ93_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQ93_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 1.200e-19
Identity = 50/79 (63.29%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   13 WLNTVVTWVGATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRTL 249
            W+      VG   L YW   L  FVLRHFT P+ A L +L     AWAVVTGASDGIGKAY+V LAKKGFNVFLISRTL
Sbjct:   13 WITNCALLVGVLVLCYWIFLLVKFVLRHFTKPSDAFLKKLSGGD-AWAVVTGASDGIGKAYAVTLAKKGFNVFLISRTL 90          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A550CWR7_9AGAR (Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CWR7_9AGAR)

HSP 1 Score: 68.9 bits (167), Expect = 6.860e-12
Identity = 37/69 (53.62%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   40 GATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRT 246
            G+ +LL +  + T F+L+ F   +   L + GAK GAWAVVTGA+DGIGK ++++LAK GFNVFL+SRT
Sbjct:   26 GSLSLLKFCWKTTCFLLQTFIL-SGTSLKKFGAKQGAWAVVTGATDGIGKEFALQLAKAGFNVFLVSRT 93          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: F8NQ12_SERL9 (Very-long-chain 3-oxoacyl-CoA reductase n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8NQ12_SERL9)

HSP 1 Score: 68.6 bits (166), Expect = 9.650e-12
Identity = 35/79 (44.30%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    7 CCWLNTVVTWVGATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISR 243
            C WL+T +  VGA     +A++  L   + F  P K +L +  AK G+WAV+TGASDGIG+ ++++LA+KGFN+ L++R
Sbjct:   19 CPWLSTFLLLVGALTFTRFAIKTVLVFAQTFILPGK-NLKQFAAKKGSWAVITGASDGIGREFALQLARKGFNILLVAR 96          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A4V3XF44_9AGAM (Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Bondarzewia mesenterica TaxID=1095465 RepID=A0A4V3XF44_9AGAM)

HSP 1 Score: 67.0 bits (162), Expect = 2.960e-11
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   40 GATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISR 243
            GA  L Y+ +     + R F  P K  L + GAK GAWAVVTGASDGIG+ ++++LAK GFNVFL +R
Sbjct:   12 GALTLSYFVLSFGSVIFRTFILPGK-PLTKFGAKQGAWAVVTGASDGIGREFALQLAKSGFNVFLAAR 78          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: W4JND9_HETIT (Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4JND9_HETIT)

HSP 1 Score: 67.0 bits (162), Expect = 3.000e-11
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   37 VGATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISR 243
            VGA  + Y  +  +  +LR F  P K  L + GAK GAWAVVTGASDGIG+ ++++LA+ GFNVFL +R
Sbjct:   13 VGALTIAYLLLSFSSVLLRAFVLPGK-PLKKFGAKQGAWAVVTGASDGIGREFALQLARAGFNVFLAAR 80          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A1L0DHV6_9ASCO (Very-long-chain 3-oxoacyl-CoA reductase n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0DHV6_9ASCO)

HSP 1 Score: 67.0 bits (162), Expect = 3.480e-11
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   70 QLTLFVLRHFTAPTKADL--------GRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRTL 249
            ++T F L +F+    ADL        G+ GAK G WAVVTGASDGIGK Y+++LAKKG NV L+SRTL
Sbjct:   30 KITTFTLSYFS--MVADLFILPPTNFGKYGAKKGKWAVVTGASDGIGKEYAIQLAKKGLNVVLVSRTL 95          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A642ULE6_DIURU (Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642ULE6_DIURU)

HSP 1 Score: 67.0 bits (162), Expect = 3.500e-11
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   40 GATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRTL 249
            GA  L  +++ L   V   F  P   D  + GAK G+WAVVTGASDGIGK Y+ +LA KGFN+ L SRTL
Sbjct:   25 GAVKLTTFSLSLLALVFDLFILPA-TDFNKYGAKKGSWAVVTGASDGIGKEYATQLAAKGFNIVLASRTL 93          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A4U0U9H8_9PEZI (Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0U9H8_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 3.510e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   28 VTWVGATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRT 246
            V W+      +W +  +LF+L          L RLG K G+WAVVTGASDGIGK YSV+LA+KG+N+ L+SRT
Sbjct:   36 VLWLSLKIFSFWRMIASLFILPG------TSLARLG-KKGSWAVVTGASDGIGKEYSVQLAQKGYNILLVSRT 101          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: D8Q9J6_SCHCM (Uncharacterized protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q9J6_SCHCM)

HSP 1 Score: 66.6 bits (161), Expect = 4.520e-11
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   40 GATALLYWAVQLTLFVLRHFTAPTKA---------DLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRT 246
            G+ +LL +A + T F+L+ F  P K+            +  AK GAWAVVTGA+DGIGK ++++LAK GFN+FL+SRT
Sbjct:    7 GSLSLLKFAWKTTCFLLQTFVLPGKSVRCPPYSRERAHKFDAKQGAWAVVTGATDGIGKEFALQLAKAGFNIFLVSRT 84          
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Match: A0A061BD39_CYBFA (Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A061BD39_CYBFA)

HSP 1 Score: 66.6 bits (161), Expect = 4.800e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   58 YWAVQLTLFVLRHFTAPTKADLGRLGAKSGAWAVVTGASDGIGKAYSVELAKKGFNVFLISRT 246
            Y A+ L LFVL         +  + GA +G WAVVTG+SDGIGK Y+V+LAKKGFN+FLISRT
Sbjct:   39 YSAMLLDLFVL------PPVNFKKYGANTGKWAVVTGSSDGIGKEYAVQLAKKGFNIFLISRT 95          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99657.22904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IQ93_9EUKA1.200e-1963.29Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A550CWR7_9AGAR6.860e-1253.62Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Au... [more]
F8NQ12_SERL99.650e-1244.30Very-long-chain 3-oxoacyl-CoA reductase n=2 Tax=Se... [more]
A0A4V3XF44_9AGAM2.960e-1152.94Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Bo... [more]
W4JND9_HETIT3.000e-1152.17Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=He... [more]
A0A1L0DHV6_9ASCO3.480e-1155.88Very-long-chain 3-oxoacyl-CoA reductase n=2 Tax=[C... [more]
A0A642ULE6_DIURU3.500e-1152.86Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Di... [more]
A0A4U0U9H8_9PEZI3.510e-1150.68Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Sa... [more]
D8Q9J6_SCHCM4.520e-1147.44Uncharacterized protein (Fragment) n=1 Tax=Schizop... [more]
A0A061BD39_CYBFA4.800e-1158.73Very-long-chain 3-oxoacyl-CoA reductase n=1 Tax=Cy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99657contigM-pyrifera_M_contig99657:1..249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score70.9
Seed ortholog evalue3.3e-10
Seed eggNOG ortholog85982.XP_007316664.1
KEGG rclassRC00029,RC00103,RC00127,RC00261
KEGG koko:K10251
KEGG ReactionR02352,R02353,R04681,R04682,R07759,R08945,R08980,R10826
KEGG Pathwayko00062,ko00140,ko01040,ko01100,ko01110,ko01212,map00062,map00140,map01040,map01100,map01110,map01212
KEGG ModuleM00415
Hectar predicted targeting categorysignal anchor
GOsGO:0000038,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009987,GO:0012505,GO:0016020,GO:0016053,GO:0016491,GO:0016614,GO:0019752,GO:0030148,GO:0030497,GO:0031984,GO:0032787,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045703,GO:0046394,GO:0046467,GO:0055114,GO:0071704,GO:0072330,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Component of the microsomal membrane bound fatty acid elongation system, which produces the 26-carbon very long-chain fatty acids (VLCFA) from palmitate. Catalyzes the reduction of the 3-ketoacyl-CoA intermediate that is formed in each cycle of fatty acid elongation. VLCFAs serve as precursors for ceramide and sphingolipids
EggNOG OGs224VG@155619,38GQB@33154,3NV2T@4751,3UY4P@5204,COG0300@1,KOG1014@2759
EC1.1.1.330,1.1.1.62
COG Functional cat.Q
Best tax levelAgaricomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size249
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.3647697-CDS-M-pyrifera_M_contig99657:0..2491622816913.3647697-CDS-M-pyrifera_M_contig99657:0..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99657 1..249 -
1692278252.1002705-CDS-M-pyrifera_M_contig99657:0..2491692278252.1002705-CDS-M-pyrifera_M_contig99657:0..249Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99657 1..249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99657.22904.1prot_M-pyrifera_M_contig99657.22904.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99657 1..249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99657.22904.1

>prot_M-pyrifera_M_contig99657.22904.1 ID=prot_M-pyrifera_M_contig99657.22904.1|Name=mRNA_M-pyrifera_M_contig99657.22904.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MICCWLNTVVTWVGATALLYWAVQLTLFVLRHFTAPTKADLGRLGAKSGA
WAVVTGASDGIGKAYSVELAKKGFNVFLISRTL
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mRNA from alignment at M-pyrifera_M_contig99657:1..249-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99657.22904.1 ID=mRNA_M-pyrifera_M_contig99657.22904.1|Name=mRNA_M-pyrifera_M_contig99657.22904.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig99657:1..249- (Macrocystis pyrifera P11B4 male)
ATGATTTGCTGCTGGTTGAACACGGTGGTGACGTGGGTGGGCGCCACTGC GCTGCTCTATTGGGCAGTACAGCTCACGCTCTTTGTGCTGCGCCACTTCA CAGCGCCCACCAAGGCCGACCTCGGTCGTCTGGGCGCGAAGTCTGGTGCG TGGGCAGTGGTGACTGGAGCCTCCGACGGAATCGGAAAGGCCTATTCCGT GGAGCTGGCCAAGAAGGGCTTCAATGTCTTCCTCATCAGCCGCACCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99657:1..249-

>mRNA_M-pyrifera_M_contig99657.22904.1 ID=mRNA_M-pyrifera_M_contig99657.22904.1|Name=mRNA_M-pyrifera_M_contig99657.22904.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig99657:1..249- (Macrocystis pyrifera P11B4 male)
ATGATTTGCTGCTGGTTGAACACGGTGGTGACGTGGGTGGGCGCCACTGC
GCTGCTCTATTGGGCAGTACAGCTCACGCTCTTTGTGCTGCGCCACTTCA
CAGCGCCCACCAAGGCCGACCTCGGTCGTCTGGGCGCGAAGTCTGGTGCG
TGGGCAGTGGTGACTGGAGCCTCCGACGGAATCGGAAAGGCCTATTCCGT
GGAGCTGGCCAAGAAGGGCTTCAATGTCTTCCTCATCAGCCGCACCCTCA
TGATTTGCTGCTGGTTGAACACGGTGGTGACGTGGGTGGGCGCCACTGCG
CTGCTCTATTGGGCAGTACAGCTCACGCTCTTTGTGCTGCGCCACTTCAC
AGCGCCCACCAAGGCCGACCTCGGTCGTCTGGGCGCGAAGTCTGGTGCGT
GGGCAGTGGTGACTGGAGCCTCCGACGGAATCGGAAAGGCCTATTCCGTG
GAGCTGGCCAAGAAGGGCTTCAATGTCTTCCTCATCAGCCGCACCCTC
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