mRNA_M-pyrifera_M_contig99603.22900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99603.22900.1
Unique NamemRNA_M-pyrifera_M_contig99603.22900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: A0A5A8DK04_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DK04_CAFRO)

HSP 1 Score: 68.6 bits (166), Expect = 2.390e-13
Identity = 38/86 (44.19%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPM--CKLARQQEFHEERLSLPSWKRQVDDILRTSRTLRFPLAFVNTVVIVIELLMGG 258
            MGF+L+N+ K G+LI NALA+LH+ R L PM   ++A  +    +  S P+WKRQV ++L  +R  ++PL   N  +I +ELL GG
Sbjct:    1 MGFSLYNILKFGVLIFNALAILHDKRVLAPMGFSRVASAEPVEADD-SGPNWKRQVGELLAYARLFQWPLVIANVTIITLELLFGG 85          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: A0A6A4IQ71_APOLU (Immediate early response 3-interacting protein 1 n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4IQ71_APOLU)

HSP 1 Score: 64.7 bits (156), Expect = 7.100e-12
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQQE--FHEERLSLPSWKRQVDDILRTSRT-LRFPLAFVNTVVIVIELLMG 255
            M FTLWNLF+A LL++NA+ +LHE RFL  M     QQ   F E     PS K Q+ +++ + RT +RFPL FVN + IV++LL+G
Sbjct:    1 MAFTLWNLFEATLLVLNAVCVLHEERFLARMGWRTGQQVQGFGEP----PSAKSQIVNLIYSIRTVMRFPLIFVNILTIVVKLLLG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: UPI00158B6AD5 (immediate early response 3-interacting protein 1 n=1 Tax=Chelonus insularis TaxID=460826 RepID=UPI00158B6AD5)

HSP 1 Score: 64.7 bits (156), Expect = 7.100e-12
Identity = 42/86 (48.84%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQ--QEFHEERLSLPSWKRQVDDILRTSRTL-RFPLAFVNTVVIVIELLMG 255
            M FTLW LF+A LL +NA+ +LHE RFL  +   ARQ  Q F E     P+ K Q+ +++R+ RT+ RFPL F+NT+ IVI+L++G
Sbjct:    1 MAFTLWTLFEAALLCLNAICVLHEERFLVKVGWGARQNIQGFGEP----PTIKSQMLNLVRSIRTVARFPLIFLNTITIVIKLVLG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: UPI001EECE40C (immediate early response 3-interacting protein 1-like n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EECE40C)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-11
Identity = 42/86 (48.84%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMC--KLARQQEFHEERLSLPSWKRQVDDILRTSRT-LRFPLAFVNTVVIVIELLMG 255
            M FTLWNLF+A LL +NA+ +LHE RFL  M     A  Q F E+    P+ K QV +++R+ RT +R PL F+N V IV++LL+G
Sbjct:    1 MAFTLWNLFEAALLCLNAVCVLHEERFLAKMGWGANANVQGFGEQ----PTVKSQVLNLVRSIRTVMRIPLIFLNIVTIVVKLLLG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: A0A2P8Y5F8_BLAGE (Immediate early response 3-interacting protein 1 n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Y5F8_BLAGE)

HSP 1 Score: 63.2 bits (152), Expect = 2.870e-11
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQ--QEFHEERLSLPSWKRQVDDILRTSRTL-RFPLAFVNTVVIVIELLMG 255
            M FTLWNLF+A LL +NA+ +LHE RFL  M   A Q  Q F E+    P+ K Q+ +++R+ RT+ R PL F+N + IVI+L++G
Sbjct:    1 MAFTLWNLFEATLLCLNAVCILHEERFLAKMGWGANQNIQGFGEQ----PTIKSQILNLVRSIRTVTRIPLIFLNILTIVIKLILG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: UPI001F4FCD47 (immediate early response 3-interacting protein 1 n=1 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F4FCD47)

HSP 1 Score: 61.6 bits (148), Expect = 1.160e-10
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQ--QEFHEERLSLPSWKRQVDDILRTSR-TLRFPLAFVNTVVIVIELLMG 255
            M FTLWNLF+A LL +NA+ +LHE RFL  +     Q  Q F E+    P+ K Q+ +++R+ R  +R PL F+N + IVI+LL+G
Sbjct:    1 MAFTLWNLFEASLLCLNAVCILHEERFLAKIGWSVNQNVQGFGEQ----PTVKSQILNLIRSVRLVMRVPLIFLNIITIVIKLLLG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: A0A6P9AD91_THRPL (Immediate early response 3-interacting protein 1 n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P9AD91_THRPL)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-10
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQ--QEFHEERLSLPSWKRQVDDILRTSRTL-RFPLAFVNTVVIVIELLMG 255
            M FTLWNL +A +LI+NA+ +LHE RFL  +   A    Q F E+    PS K Q+  ++R+ RT+ R PL F+NT +IVI+L++G
Sbjct:    1 MAFTLWNLLEASILILNAVCVLHEERFLKNVGWGANAPVQGFGEQ----PSVKSQILHLVRSIRTVTRIPLIFLNTALIVIKLILG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: UPI001CA8C8A7 (immediate early response 3-interacting protein 1 n=2 Tax=Cynipoidea TaxID=40307 RepID=UPI001CA8C8A7)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-10
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQ--QEFHEERLSLPSWKRQVDDILRTSRTL-RFPLAFVNTVVIVIELLMG 255
            M FTLW LF+A LL +NA+ +LHE RFL  +   ARQ  Q F E     P+ K Q+ +++R+ RT+ RFPL F+N + IV+++++G
Sbjct:    1 MAFTLWTLFEASLLCLNAICVLHEERFLIKIGWGARQNIQGFGES----PTIKSQMLNLVRSIRTVARFPLIFLNILTIVVKMILG 82          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: A0A8K0JVC8_LADFU (Uncharacterized protein n=2 Tax=Odonata TaxID=6961 RepID=A0A8K0JVC8_LADFU)

HSP 1 Score: 60.8 bits (146), Expect = 2.270e-10
Identity = 38/85 (44.71%), Postives = 58/85 (68.24%), Query Frame = 1
Query:    7 MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQ-QEFHEERLSLPSWKRQVDDILRTSRT-LRFPLAFVNTVVIVIELLMG 255
            M FTLW+LF+A LL +NA+ +LHE RFL  +   A Q Q F E+    P+ K Q+ +++R+ RT +R PL F+N + IV++L++G
Sbjct:    1 MAFTLWSLFEATLLCLNAVCVLHEQRFLSKIGWGANQIQGFGEQ----PTVKSQILNLIRSIRTVMRIPLIFLNIMTIVVKLILG 81          
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Match: A0A0T6AVY7_9SCAR (Immediate early response 3-interacting protein 1 (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6AVY7_9SCAR)

HSP 1 Score: 61.2 bits (147), Expect = 2.940e-10
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 ERMGFTLWNLFKAGLLIMNALALLHEWRFLHPM---CKLARQQEFHEERLSLPSWKRQVDDILRTSRTL-RFPLAFVNTVVIVIELLMG 255
            E+MGF+LWNLF+A LL +NA+ +LHE RFL  +    K    Q F E+    P+ K Q+ +++ + RT+ R PL   N V IV++L++G
Sbjct:   22 EKMGFSLWNLFEASLLCLNAVCILHEERFLARIGWSAKSPSVQGFGEQ----PTAKAQILNLIHSIRTVARIPLILFNIVTIVLKLILG 106          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99603.22900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DK04_CAFRO2.390e-1344.19Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A6A4IQ71_APOLU7.100e-1248.84Immediate early response 3-interacting protein 1 n... [more]
UPI00158B6AD57.100e-1248.84immediate early response 3-interacting protein 1 n... [more]
UPI001EECE40C1.010e-1148.84immediate early response 3-interacting protein 1-l... [more]
A0A2P8Y5F8_BLAGE2.870e-1147.67Immediate early response 3-interacting protein 1 n... [more]
UPI001F4FCD471.160e-1045.35immediate early response 3-interacting protein 1 n... [more]
A0A6P9AD91_THRPL1.640e-1046.51Immediate early response 3-interacting protein 1 n... [more]
UPI001CA8C8A71.640e-1045.35immediate early response 3-interacting protein 1 n... [more]
A0A8K0JVC8_LADFU2.270e-1044.71Uncharacterized protein n=2 Tax=Odonata TaxID=6961... [more]
A0A0T6AVY7_9SCAR2.940e-1042.70Immediate early response 3-interacting protein 1 (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99603contigM-pyrifera_M_contig99603:183..579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
Exons2
Model size261
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99603.22900.1prot_M-pyrifera_M_contig99603.22900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99603 189..579 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.1881132-UTR-M-pyrifera_M_contig99603:182..1881622816913.1881132-UTR-M-pyrifera_M_contig99603:182..188Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99603 183..188 +
1692278251.974971-UTR-M-pyrifera_M_contig99603:182..1881692278251.974971-UTR-M-pyrifera_M_contig99603:182..188Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99603 183..188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.199221-CDS-M-pyrifera_M_contig99603:188..2891622816913.199221-CDS-M-pyrifera_M_contig99603:188..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99603 189..289 +
1692278251.9943771-CDS-M-pyrifera_M_contig99603:188..2891692278251.9943771-CDS-M-pyrifera_M_contig99603:188..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99603 189..289 +
1622816913.2102523-CDS-M-pyrifera_M_contig99603:425..5791622816913.2102523-CDS-M-pyrifera_M_contig99603:425..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99603 426..579 +
1692278252.0101013-CDS-M-pyrifera_M_contig99603:425..5791692278252.0101013-CDS-M-pyrifera_M_contig99603:425..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99603 426..579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99603.22900.1

>prot_M-pyrifera_M_contig99603.22900.1 ID=prot_M-pyrifera_M_contig99603.22900.1|Name=mRNA_M-pyrifera_M_contig99603.22900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MGFTLWNLFKAGLLIMNALALLHEWRFLHPMCKLARQQEFHEERLSLPSW
KRQVDDILRTSRTLRFPLAFVNTVVIVIELLMGG*
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mRNA from alignment at M-pyrifera_M_contig99603:183..579+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99603.22900.1 ID=mRNA_M-pyrifera_M_contig99603.22900.1|Name=mRNA_M-pyrifera_M_contig99603.22900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=397bp|location=Sequence derived from alignment at M-pyrifera_M_contig99603:183..579+ (Macrocystis pyrifera P11B4 male)
GAAAGAATGGGTTTCACGCTCTGGAACCTGTTCAAGGCTGGGTTGTTGAT CATGAACGCGTTAGCACTCCTCCATGAATGGAGATTTCTGCACCCAATGT GTAAGCTGTCCTTCTCAACCTTCATTTCCAAACACACGTTAAACTCGTTC CCCATCTTCCCATGCTTTTCATCCCCATTGCTTCCTTGCAGTGGGCATAG GAGAACTTCCACCGGACAAAAAGTTGACCCCCGAGGAGGAAAGAGCCAGG CAGCAAGAGTTTCATGAAGAAAGACTCTCCTTGCCCTCTTGGAAGCGGCA AGTTGATGATATTCTTCGTACATCTCGAACACTACGCTTCCCACTCGCAT TTGTCAACACCGTGGTCATTGTCATAGAGCTCCTCATGGGTGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99603:183..579+

>mRNA_M-pyrifera_M_contig99603.22900.1 ID=mRNA_M-pyrifera_M_contig99603.22900.1|Name=mRNA_M-pyrifera_M_contig99603.22900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig99603:183..579+ (Macrocystis pyrifera P11B4 male)
ATGGGTTTCACGCTCTGGAACCTGTTCAAGGCTGGGTTGTTGATCATGAA
CGCGTTAGCACTCCTCCATGAATGGAGATTTCTGCACCCAATGTGTAAGC
TATGGGTTTCACGCTCTGGAACCTGTTCAAGGCTGGGTTGTTGATCATGA
ACGCGTTAGCACTCCTCCATGAATGGAGATTTCTGCACCCAATGTGTAAG
CTAGCCAGGCAGCAAGAGTTTCATGAAGAAAGACTCTCCTTGCCCTCTTG
GAAGCGGCAAGTTGATGATATTCTTCGTACATCTCGAACACTACGCTTCC
CACTCGCATTTGTCAACACCGTGGTCATTGTCATAGAGCTCCTCATGGGT
GGATGAAGCCAGGCAGCAAGAGTTTCATGAAGAAAGACTCTCCTTGCCCT
CTTGGAAGCGGCAAGTTGATGATATTCTTCGTACATCTCGAACACTACGC
TTCCCACTCGCATTTGTCAACACCGTGGTCATTGTCATAGAGCTCCTCAT
GGGTGGATGA
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