mRNA_M-pyrifera_M_contig99005.22777.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99005.22777.1
Unique NamemRNA_M-pyrifera_M_contig99005.22777.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A2D8LR60_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LR60_9ACTN)

HSP 1 Score: 196 bits (498), Expect = 7.540e-61
Identity = 98/121 (80.99%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YP GGS VRL RQIGYAEAADILLTGKHITAAEAKAMGL+SRVVPDG+A EHA+EVAE+VAGNGPLAVEAVL+T+H+T GMTEAEA+AHE+ Y   VM S+D+KEGPRAFAEKR PNFQ+K
Sbjct:  146 YPAGGSPVRLPRQIGYAEAADILLTGKHITAAEAKAMGLISRVVPDGTAFEHALEVAEIVAGNGPLAVEAVLRTMHETSGMTEAEAWAHEEAYANAVMQSDDAKEGPRAFAEKRTPNFQKK 266
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A3M2G171_ACTSX (Crotonase/enoyl-CoA hydratase family protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G171_ACTSX)

HSP 1 Score: 175 bits (444), Expect = 6.100e-53
Identity = 90/121 (74.38%), Postives = 101/121 (83.47%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YPMGGSAVRL RQI Y EAADILLTGKHITAAEAK++GL+  VV DG AL  A E+AE +A NGPLAVEAVL+TLH+T GMTEAEA+AHE  Y   V ASED+KEGPRAFAEKR PNF+R+
Sbjct:  125 YPMGGSAVRLPRQIPYTEAADILLTGKHITAAEAKSLGLIGHVVADGQALTRAREIAETIAANGPLAVEAVLRTLHETSGMTEAEAFAHEQEYGQAVFASEDAKEGPRAFAEKRTPNFRRR 245
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A538D5V9_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D5V9_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 5.710e-50
Identity = 85/121 (70.25%), Postives = 100/121 (82.64%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YPMGGSAVRLARQ+ Y  AADILLTG+H+TAAEAK +GL+  VVPDG AL  A E+A V+A NGPLAVEA+LKTLH+T GMTEAEA+A+E  Y   V  S+D+KEGP+AFAEKR PNFQR+
Sbjct:  145 YPMGGSAVRLARQVPYTIAADILLTGRHLTAAEAKEIGLIGYVVPDGQALAKAREIAAVIAANGPLAVEAILKTLHETEGMTEAEAFAYEHDYGSAVFRSDDAKEGPKAFAEKRSPNFQRR 265
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A6I3C1Z9_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=2 Tax=root TaxID=1 RepID=A0A6I3C1Z9_9ACTN)

HSP 1 Score: 167 bits (423), Expect = 1.670e-49
Identity = 87/121 (71.90%), Postives = 99/121 (81.82%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YPMGGSAVRLARQI YA AADILLTGKH++  EAK +GLV  VVPDG AL  A E+AEV+AGNGPLAVEA+LKTLH+T GM+E EA+A+E  Y   V  S D+KEGP+AFAEKR PNFQRK
Sbjct:  146 YPMGGSAVRLARQIPYAVAADILLTGKHVSGQEAKDIGLVGTVVPDGQALAKAREIAEVIAGNGPLAVEAILKTLHETIGMSEEEAFAYEQPYGQAVFQSADAKEGPKAFAEKRTPNFQRK 266
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A7Y2D827_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2D827_9ACTN)

HSP 1 Score: 163 bits (412), Expect = 7.420e-48
Identity = 86/120 (71.67%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQR 360
            YPMGGSAVRLARQI Y EAADILLTGKHITA EAK +GL+  VVPDG AL  A E+A  +A NGPLAVEA+LKTL +T GMTEAEA+A ED     V  S D+KEGP+AFAEKRKPNF R
Sbjct:  145 YPMGGSAVRLARQIPYTEAADILLTGKHITANEAKRLGLIGHVVPDGQALTKAREIAATIAENGPLAVEAILKTLRETQGMTEAEAFAFEDPLGTAVFNSNDAKEGPKAFAEKRKPNFTR 264
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A2E6E1H4_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=8 Tax=Actinobacteria TaxID=201174 RepID=A0A2E6E1H4_9ACTN)

HSP 1 Score: 161 bits (407), Expect = 4.330e-47
Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YPMGGSAVRL RQI Y  AAD+LLTG+HI A EAK +GL+  VVPDG AL  A E+AE+V  NGPLAVEA+LKTLH+T GMTE EA AHE TY   V +SED+KEGPRAF+EKR P+F++K
Sbjct:  146 YPMGGSAVRLPRQIPYTVAADLLLTGRHIDAEEAKEIGLIGHVVPDGEALSKAREIAEIVCKNGPLAVEAILKTLHETDGMTEQEALAHEFTYGWSVFSSEDAKEGPRAFSEKRTPDFRKK 266
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A382Y988_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382Y988_9ZZZZ)

HSP 1 Score: 156 bits (395), Expect = 7.530e-47
Identity = 80/121 (66.12%), Postives = 94/121 (77.69%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YPM GSAVRL RQI +  AADILLTG+HI A EAK +GLV  VVPDG AL  A+E+A+ +A NGPLAVEAVL+TL +T GMTE EA+AHE  Y   V  SED+KEGPRAFAEKR P ++R+
Sbjct:   23 YPMAGSAVRLPRQIPFTAAADILLTGRHIDAPEAKRLGLVGHVVPDGEALATALEIADTIAANGPLAVEAVLRTLRETSGMTEEEAFAHEQAYGQAVFGSEDAKEGPRAFAEKRMPGYERR 143
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A3D5K3X1_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K3X1_9ACTN)

HSP 1 Score: 160 bits (404), Expect = 8.820e-47
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQR 360
            YP GGSAVRLARQI + EAADILLTGKH++A EAK++GL+  VVPDG+AL+ A EVA  VA NGPLAVEA+L+TL +TPGMTE EAY+ E+  +  V +S D+KEGPRAFAEKR P+F+R
Sbjct:  134 YPGGGSAVRLARQIPFTEAADILLTGKHVSATEAKSLGLIGHVVPDGTALDRAREVAAAVASNGPLAVEAILRTLRETPGMTEDEAYSFEEPLSRAVFSSRDAKEGPRAFAEKRAPDFRR 253
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A6B0ZN18_9ACTN (Crotonase/enoyl-CoA hydratase family protein n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B0ZN18_9ACTN)

HSP 1 Score: 159 bits (402), Expect = 3.220e-46
Identity = 83/121 (68.60%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQRK 363
            YPMGGSAVRL RQI Y  AA+ILLTGKHITAAEAK +GLV  VVPDG AL+ A E+A  +  NGPLAVEA+L+TLH+T GMTE EA AHE  Y   V  S+D+KEGP AF++KRKPNFQR+
Sbjct:  156 YPMGGSAVRLRRQIPYTVAAEILLTGKHITAAEAKDIGLVGHVVPDGQALDKAKEIAATICENGPLAVEAILRTLHETDGMTEEEALAHEFEYGWKVFQSDDAKEGPLAFSQKRKPNFQRR 276
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BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Match: A0A558BCF5_9PSEU (Crotonase/enoyl-CoA hydratase family protein n=3 Tax=Amycolatopsis TaxID=1813 RepID=A0A558BCF5_9PSEU)

HSP 1 Score: 158 bits (399), Expect = 6.250e-46
Identity = 80/119 (67.23%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:    1 YPMGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEHAMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASEDSKEGPRAFAEKRKPNFQ 357
            +PMGGSAVRL RQI Y  AA+ILLTG+HITAAEAK +GL+ RVVPDG+AL+HA+EVAE++A NGPLAV+A+L+T+ DT GM E EA+  E  Y   V  S+D+KEGPRAF EKR+PNFQ
Sbjct:  142 FPMGGSAVRLPRQIPYTVAAEILLTGRHITAAEAKEIGLIGRVVPDGTALDHALEVAELIAANGPLAVQAILRTIRDTEGMHEEEAFKLEAQYGLKVFQSDDAKEGPRAFTEKRRPNFQ 260
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99005.22777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LR60_9ACTN7.540e-6180.99Crotonase/enoyl-CoA hydratase family protein n=5 T... [more]
A0A3M2G171_ACTSX6.100e-5374.38Crotonase/enoyl-CoA hydratase family protein (Frag... [more]
A0A538D5V9_9ACTN5.710e-5070.25Crotonase/enoyl-CoA hydratase family protein n=1 T... [more]
A0A6I3C1Z9_9ACTN1.670e-4971.90Crotonase/enoyl-CoA hydratase family protein n=2 T... [more]
A0A7Y2D827_9ACTN7.420e-4871.67Crotonase/enoyl-CoA hydratase family protein n=1 T... [more]
A0A2E6E1H4_9ACTN4.330e-4768.60Crotonase/enoyl-CoA hydratase family protein n=8 T... [more]
A0A382Y988_9ZZZZ7.530e-4766.12Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A3D5K3X1_9ACTN8.820e-4767.50Crotonase/enoyl-CoA hydratase family protein n=1 T... [more]
A0A6B0ZN18_9ACTN3.220e-4668.60Crotonase/enoyl-CoA hydratase family protein n=2 T... [more]
A0A558BCF5_9PSEU6.250e-4667.23Crotonase/enoyl-CoA hydratase family protein n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99005contigM-pyrifera_M_contig99005:3..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score152.5
Seed ortholog evalue1.2e-34
Seed eggNOG ortholog43354.JOIJ01000014_gene865
Preferred nameechA19
KEGG rclassRC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01692
KEGG ReactionR03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004300,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575
EggNOG free text desc.Enoyl-CoA hydratase/isomerase
EggNOG OGs2GKJ6@201174,4E1AW@85010,COG1024@1,COG1024@2
EC4.2.1.17
COG Functional cat.I
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size366
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.9979947-UTR-M-pyrifera_M_contig99005:2..81622816906.9979947-UTR-M-pyrifera_M_contig99005:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99005 3..8 +
1692278248.3653476-UTR-M-pyrifera_M_contig99005:2..81692278248.3653476-UTR-M-pyrifera_M_contig99005:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99005 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816907.011211-CDS-M-pyrifera_M_contig99005:8..3681622816907.011211-CDS-M-pyrifera_M_contig99005:8..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99005 9..368 +
1692278248.3796346-CDS-M-pyrifera_M_contig99005:8..3681692278248.3796346-CDS-M-pyrifera_M_contig99005:8..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99005 9..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99005.22777.1prot_M-pyrifera_M_contig99005.22777.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99005 9..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99005.22777.1

>prot_M-pyrifera_M_contig99005.22777.1 ID=prot_M-pyrifera_M_contig99005.22777.1|Name=mRNA_M-pyrifera_M_contig99005.22777.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MGGSAVRLARQIGYAEAADILLTGKHITAAEAKAMGLVSRVVPDGSALEH
AMEVAEVVAGNGPLAVEAVLKTLHDTPGMTEAEAYAHEDTYTGVVMASED
SKEGPRAFAEKRKPNFQRK*
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mRNA from alignment at M-pyrifera_M_contig99005:3..368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99005.22777.1 ID=mRNA_M-pyrifera_M_contig99005.22777.1|Name=mRNA_M-pyrifera_M_contig99005.22777.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig99005:3..368+ (Macrocystis pyrifera P11B4 male)
TACCCCATGGGTGGCTCCGCCGTTCGGCTCGCGCGCCAGATCGGCTACGC
CGAGGCTGCCGACATCTTGCTGACCGGCAAGCACATCACCGCCGCCGAGG
CGAAGGCGATGGGCCTGGTCAGCAGAGTCGTTCCCGACGGTTCTGCGCTC
GAACACGCGATGGAGGTCGCCGAGGTCGTCGCCGGCAACGGCCCGCTCGC
GGTCGAGGCCGTGCTCAAGACCCTCCACGACACGCCGGGGATGACCGAGG
CCGAGGCCTACGCCCACGAGGACACCTACACCGGTGTCGTCATGGCCAGC
GAGGACTCCAAGGAAGGGCCGCGCGCCTTCGCCGAGAAGCGCAAGCCGAA
CTTCCAGCGGAAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99005:3..368+

>mRNA_M-pyrifera_M_contig99005.22777.1 ID=mRNA_M-pyrifera_M_contig99005.22777.1|Name=mRNA_M-pyrifera_M_contig99005.22777.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig99005:3..368+ (Macrocystis pyrifera P11B4 male)
ATGGGTGGCTCCGCCGTTCGGCTCGCGCGCCAGATCGGCTACGCCGAGGC
TGCCGACATCTTGCTGACCGGCAAGCACATCACCGCCGCCGAGGCGAAGG
CGATGGGCCTGGTCAGCAGAGTCGTTCCCGACGGTTCTGCGCTCGAACAC
GCGATGGAGGTCGCCGAGGTCGTCGCCGGCAACGGCCCGCTCGCGGTCGA
GGCCGTGCTCAAGACCCTCCACGACACGCCGGGGATGACCGAGGCCGAGG
CCTACGCCCACGAGGACACCTACACCGGTGTCGTCATGGCCAGCGAGGAC
TCCAAGGAAGGGCCGCGCGCCTTCGCCGAGAAGCGCAAGCCGAACTTCCA
GCGGAAGTAGATGGGTGGCTCCGCCGTTCGGCTCGCGCGCCAGATCGGCT
ACGCCGAGGCTGCCGACATCTTGCTGACCGGCAAGCACATCACCGCCGCC
GAGGCGAAGGCGATGGGCCTGGTCAGCAGAGTCGTTCCCGACGGTTCTGC
GCTCGAACACGCGATGGAGGTCGCCGAGGTCGTCGCCGGCAACGGCCCGC
TCGCGGTCGAGGCCGTGCTCAAGACCCTCCACGACACGCCGGGGATGACC
GAGGCCGAGGCCTACGCCCACGAGGACACCTACACCGGTGTCGTCATGGC
CAGCGAGGACTCCAAGGAAGGGCCGCGCGCCTTCGCCGAGAAGCGCAAGC
CGAACTTCCAGCGGAAGTAG
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