mRNA_M-pyrifera_M_contig98995.22774.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98995.22774.1
Unique NamemRNA_M-pyrifera_M_contig98995.22774.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98995.22774.1 vs. uniprot
Match: A0A1Z9UI35_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UI35_9GAMM)

HSP 1 Score: 109 bits (273), Expect = 1.460e-26
Identity = 49/110 (44.55%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:    1 PVTDLELYLGTELHGAVWREDGRNFGHLHSYTPRVAAIMELAHEHELAPAARGARIAEMMVQLMCLEAELVFNGPEIPMRTVFPQAGRYHVFLQVAPGGEPVVFPFVIDV 330
            PV+DL+L+LG+E H A+WR+DG+ FGH H+YTP +  +M      + + A     I EMM+++M   +EL+F GP IP+  +FPQ G+Y +  + AP G P+VF F+I+V
Sbjct:  194 PVSDLKLWLGSEAHVAIWRDDGKYFGHTHAYTPAMRQMMGGLAXQKKSHATNPKMIQEMMLRMMSQPSELIFEGPTIPVFYIFPQPGKYVMHFECAPNGNPIVFQFIINV 303
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98995.22774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1Z9UI35_9GAMM1.460e-2644.55Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98995contigM-pyrifera_M_contig98995:331..693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.7407317-CDS-M-pyrifera_M_contig98995:330..6931622816906.7407317-CDS-M-pyrifera_M_contig98995:330..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98995 331..693 -
1692278248.1769068-CDS-M-pyrifera_M_contig98995:330..6931692278248.1769068-CDS-M-pyrifera_M_contig98995:330..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98995 331..693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98995.22774.1prot_M-pyrifera_M_contig98995.22774.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98995 331..693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98995.22774.1

>prot_M-pyrifera_M_contig98995.22774.1 ID=prot_M-pyrifera_M_contig98995.22774.1|Name=mRNA_M-pyrifera_M_contig98995.22774.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
PVTDLELYLGTELHGAVWREDGRNFGHLHSYTPRVAAIMELAHEHELAPA
ARGARIAEMMVQLMCLEAELVFNGPEIPMRTVFPQAGRYHVFLQVAPGGE
PVVFPFVIDVAEPPGGADPS*
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mRNA from alignment at M-pyrifera_M_contig98995:331..693-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98995.22774.1 ID=mRNA_M-pyrifera_M_contig98995.22774.1|Name=mRNA_M-pyrifera_M_contig98995.22774.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig98995:331..693- (Macrocystis pyrifera P11B4 male)
CCTGTCACCGATCTCGAATTGTATCTCGGCACGGAATTGCACGGCGCGGT
GTGGCGCGAAGACGGGCGCAATTTCGGTCATCTGCACAGCTACACGCCAC
GCGTCGCCGCGATCATGGAACTTGCCCACGAGCACGAACTCGCACCGGCC
GCGCGCGGCGCACGCATTGCCGAGATGATGGTGCAATTGATGTGCCTCGA
GGCCGAACTCGTGTTCAACGGTCCCGAGATCCCGATGCGTACCGTGTTTC
CGCAGGCCGGGCGTTACCACGTATTTCTGCAGGTCGCACCCGGCGGCGAG
CCAGTGGTGTTTCCGTTCGTCATTGATGTCGCCGAGCCGCCCGGCGGGGC
GGATCCATCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98995:331..693-

>mRNA_M-pyrifera_M_contig98995.22774.1 ID=mRNA_M-pyrifera_M_contig98995.22774.1|Name=mRNA_M-pyrifera_M_contig98995.22774.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig98995:331..693- (Macrocystis pyrifera P11B4 male)
CCTGTCACCGATCTCGAATTGTATCTCGGCACGGAATTGCACGGCGCGGT
GTGGCGCGAAGACGGGCGCAATTTCGGTCATCTGCACAGCTACACGCCAC
GCGTCGCCGCGATCATGGAACTTGCCCACGAGCACGAACTCGCACCGGCC
GCGCGCGGCGCACGCATTGCCGAGATGATGGTGCAATTGATGTGCCTCGA
GGCCGAACTCGTGTTCAACGGTCCCGAGATCCCGATGCGTACCGTGTTTC
CGCAGGCCGGGCGTTACCACGTATTTCTGCAGGTCGCACCCGGCGGCGAG
CCAGTGGTGTTTCCGTTCGTCATTGATGTCGCCGAGCCGCCCGGCGGGGC
GGATCCATCATGACCTGTCACCGATCTCGAATTGTATCTCGGCACGGAAT
TGCACGGCGCGGTGTGGCGCGAAGACGGGCGCAATTTCGGTCATCTGCAC
AGCTACACGCCACGCGTCGCCGCGATCATGGAACTTGCCCACGAGCACGA
ACTCGCACCGGCCGCGCGCGGCGCACGCATTGCCGAGATGATGGTGCAAT
TGATGTGCCTCGAGGCCGAACTCGTGTTCAACGGTCCCGAGATCCCGATG
CGTACCGTGTTTCCGCAGGCCGGGCGTTACCACGTATTTCTGCAGGTCGC
ACCCGGCGGCGAGCCAGTGGTGTTTCCGTTCGTCATTGATGTCGCCGAGC
CGCCCGGCGGGGCGGATCCATCATGA
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