mRNA_M-pyrifera_M_contig98986.22771.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98986.22771.1
Unique NamemRNA_M-pyrifera_M_contig98986.22771.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A1V9YXB9_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXB9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 3.610e-9
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   28 CLSLWEALSDD-----VGLPLKQKVRIV-------PATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQLA 207
            C +  E   DD     VG  L  K+ IV       P  S++PGFGDYV ++DADH+ VCKP+S  DIR+ LA
Sbjct:  804 CKAFAERKGDDLKVLSVGETLPMKIPIVGVEAVVVPEASSNPGFGDYVRLDDADHIDVCKPKSTDDIRYTLA 875          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: T0S7H6_SAPDV (Uncharacterized protein (Fragment) n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S7H6_SAPDV)

HSP 1 Score: 59.7 bits (143), Expect = 9.230e-9
Identity = 23/39 (58.97%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   91 IVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQLA 207
            +VP  S++PGFG+YV ++DADH+ VCKP+SI D+R+ LA
Sbjct:  862 VVPEASSNPGFGEYVRLDDADHIDVCKPKSIDDVRYTLA 900          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A067C2G8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2G8_SAPPC)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 22/39 (56.41%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   91 IVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQLA 207
            +VP  S++PGFG+YV ++DADH+ VCKP+S++D+R+ LA
Sbjct:  850 VVPEASSNPGFGEYVRLDDADHIDVCKPKSMEDVRYTLA 888          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A8J5IG43_9STRA (Tub domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IG43_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/68 (41.18%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 EVMSGRVVRCLSLWEALSDDVGLPLKQKVRIVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQL 204
            EV   + + CLS+ E+L   + + +  +  +VP+TSA+PGFG++V I DA H+ VCKP +  D+R++L
Sbjct:  708 EVFEEKDIPCLSVGESLPCRLPV-IGVEALVVPSTSANPGFGEFVPISDATHVDVCKPATTDDLRYKL 774          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A329SS56_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SS56_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.730e-8
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 EVMSGRVVRCLSLWEALSDDVGLPLKQKVRIVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQL 204
            EV   + + CLS+ E+L   + + +  +  +VP TSA+PGFG++V I DA H+ VCKP +  D+R++L
Sbjct:  859 EVFEEKDIPCLSVGESLPCRLPV-ISVEALVVPPTSANPGFGEFVPISDATHVDVCKPATTYDLRYKL 925          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: K3WNH7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNH7_GLOUD)

HSP 1 Score: 55.5 bits (132), Expect = 2.890e-7
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   28 CLSLWE-----ALSDDVGLPLKQKV-----RIVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQLA 207
            C +L+E     ALS    +P +  V      +VP +SA+PGFGD+V + DA H+ VCKP +  D+R+ LA
Sbjct:  918 CAALFEEKGIPALSIGESVPCRLPVIGVEALVVPPSSANPGFGDFVTVPDATHMSVCKPSAQSDLRYTLA 987          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A397CR77_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CR77_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.220e-7
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   22 VRCLSLWEALSDDVGLPLKQ-KVRIVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQL 204
            V  LS+ E  S  + LPL   +  +VP  S++PGFG YV + D DH+ VCKP SI D+R+ L
Sbjct:  406 VHVLSVGE--SAPMRLPLVGVEALVVPEASSNPGFGAYVKLPDLDHIQVCKPASISDVRYTL 465          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A6A4ZS90_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZS90_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 7.360e-7
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 1
Query:   22 VRCLSLWEALSDDVGLPLKQ-KVRIVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQL 204
            V  LS+ E  S  + LPL   +  +VP  S++PGFG YV + D DH+ VCKP SI D+R+ L
Sbjct:  802 VHVLSVGE--SAPMRLPLVGVEALVVPEASSNPGFGAYVKLPDLDHIQVCKPASISDVRYTL 861          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A059LKI5_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LKI5_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.710e-6
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   49 LSDDVGLPLKQ---KVRIVPATSADPGFGDYVIIEDADHLHVCKPESIKD 189
            LS   G P K    K R+V   SA PG+G++V+++D DH+ VCKP ++KD
Sbjct:   61 LSFGEGRPTKVVYIKTRVVDLASAHPGYGEFVVLDDHDHIAVCKPRNVKD 110          
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Match: A0A397DJ50_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DJ50_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.530e-6
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   22 VRCLSLWEALSDDVGLPLKQ-KVRIVPATSADPGFGDYVIIEDADHLHVCKPESIKDIRFQ 201
            V  LS+ E  S  + LPL   +  +VP  S++PGFG YV + D DH+ VCKP SI D+R Q
Sbjct:  219 VHVLSVGE--SAPMRLPLVGVEALVVPEASSNPGFGAYVKLPDLDHIQVCKPASISDVRAQ 277          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98986.22771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A1V9YXB9_9STRA3.610e-945.83Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
T0S7H6_SAPDV9.230e-958.97Uncharacterized protein (Fragment) n=1 Tax=Saprole... [more]
A0A067C2G8_SAPPC1.260e-856.41Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A8J5IG43_9STRA1.260e-841.18Tub domain-containing protein n=1 Tax=Phytophthora... [more]
A0A329SS56_9STRA1.730e-841.18Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
K3WNH7_GLOUD2.890e-741.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A397CR77_9STRA7.220e-746.77Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A4ZS90_9STRA7.360e-746.77Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A059LKI5_9CHLO1.710e-646.00Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A397DJ50_9STRA2.530e-647.54Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98986contigM-pyrifera_M_contig98986:110..316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.5970042-CDS-M-pyrifera_M_contig98986:109..3101622816906.5970042-CDS-M-pyrifera_M_contig98986:109..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98986 110..310 -
1692278248.1047776-CDS-M-pyrifera_M_contig98986:109..3101692278248.1047776-CDS-M-pyrifera_M_contig98986:109..310Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98986 110..310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816906.6114872-UTR-M-pyrifera_M_contig98986:310..3161622816906.6114872-UTR-M-pyrifera_M_contig98986:310..316Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98986 311..316 -
1692278248.115923-UTR-M-pyrifera_M_contig98986:310..3161692278248.115923-UTR-M-pyrifera_M_contig98986:310..316Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98986 311..316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98986.22771.1prot_M-pyrifera_M_contig98986.22771.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98986 110..310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98986.22771.1

>prot_M-pyrifera_M_contig98986.22771.1 ID=prot_M-pyrifera_M_contig98986.22771.1|Name=mRNA_M-pyrifera_M_contig98986.22771.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MSGRVVRCLSLWEALSDDVGLPLKQKVRIVPATSADPGFGDYVIIEDADH
LHVCKPESIKDIRFQLA
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mRNA from alignment at M-pyrifera_M_contig98986:110..316-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98986.22771.1 ID=mRNA_M-pyrifera_M_contig98986.22771.1|Name=mRNA_M-pyrifera_M_contig98986.22771.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig98986:110..316- (Macrocystis pyrifera P11B4 male)
GAAGTTATGTCTGGTCGAGTTGTGCGGTGTTTAAGTCTCTGGGAAGCATT GAGTGATGATGTTGGACTTCCATTGAAGCAAAAAGTACGGATTGTCCCAG CAACTTCTGCTGATCCCGGTTTTGGTGATTATGTCATTATTGAAGATGCA GATCATCTCCATGTCTGCAAACCAGAGAGTATCAAAGACATCCGCTTCCA ACTTGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98986:110..316-

>mRNA_M-pyrifera_M_contig98986.22771.1 ID=mRNA_M-pyrifera_M_contig98986.22771.1|Name=mRNA_M-pyrifera_M_contig98986.22771.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig98986:110..316- (Macrocystis pyrifera P11B4 male)
ATGTCTGGTCGAGTTGTGCGGTGTTTAAGTCTCTGGGAAGCATTGAGTGA
TGATGTTGGACTTCCATTGAAGCAAAAAGTACGGATTGTCCCAGCAACTT
CTGCTGATCCCGGTTTTGGTGATTATGTCATTATTGAAGATGCAGATCAT
CTCCATGTCTGCAAACCAGAGAGTATCAAAGACATCCGCTTCCAACTTGC
AATGTCTGGTCGAGTTGTGCGGTGTTTAAGTCTCTGGGAAGCATTGAGTG
ATGATGTTGGACTTCCATTGAAGCAAAAAGTACGGATTGTCCCAGCAACT
TCTGCTGATCCCGGTTTTGGTGATTATGTCATTATTGAAGATGCAGATCA
TCTCCATGTCTGCAAACCAGAGAGTATCAAAGACATCCGCTTCCAACTTG
CA
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