mRNA_M-pyrifera_M_contig98954.22757.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98954.22757.1
Unique NamemRNA_M-pyrifera_M_contig98954.22757.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: A0A7S2DWQ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWQ9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.310e-19
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   16 ELPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            E P A VQRIIK VLP++ Q+TKE++ A  KA  +FI+YLT C++D+C  GKRSTISS DV  AL ELEF
Sbjct:   25 EPPMACVQRIIKGVLPDSCQITKESKTAFSKAAGIFIIYLTTCANDFCKEGKRSTISSADVLAALRELEF 94
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: A0A7S2SN07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN07_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.340e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   16 ELPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            E P+A VQRIIKS LP+N Q+TKE++ A  KA  +FI+YLT C++D+C   KRSTISS DV  A+ ELEF
Sbjct:   72 EPPQACVQRIIKSALPDNCQITKESKAAFSKAAGIFIIYLTTCANDFCKENKRSTISSADVMSAMRELEF 141
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: Q28J93_XENTR (DNA polymerase epsilon subunit 3 n=3 Tax=Anura TaxID=8342 RepID=Q28J93_XENTR)

HSP 1 Score: 77.8 bits (190), Expect = 1.620e-16
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AVV RIIK  LPE   ++KEAR AI +A +VF+LY T+C++++ + GKR T+++TDV  A+ E+EF
Sbjct:   10 LPNAVVTRIIKEALPEGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNATDVLAAMEEMEF 78
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: D8LKB4_ECTSI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.070e-16
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   16 ELPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            E P+A VQR+IKSVLP+N Q+ K+A+ A  ++  +FI+YLTAC++D+C   KR TIS+ DV  A+ ELEF
Sbjct:   10 EPPQACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEF 79
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: V4CE76_LOTGI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4CE76_LOTGI)

HSP 1 Score: 77.4 bits (189), Expect = 3.850e-16
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AVV RIIK  +PE   ++KEAR AI KA +VF+LY T+CS+++ + GKR TI++TDV  A+ ++EF
Sbjct:   10 LPNAVVTRIIKEAIPEGINVSKEARLAISKAASVFVLYATSCSNNFALKGKRKTINATDVISAMEDMEF 78
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: A0A6P8IX46_ACTTE (DNA polymerase epsilon subunit 3-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IX46_ACTTE)

HSP 1 Score: 76.6 bits (187), Expect = 4.470e-16
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AV+ R++K VLP+   + KEAR AI KA +VF+LY T+C+++  ISGKR T+++ DV  AL E+EF
Sbjct:   10 LPNAVIARLVKDVLPDGVNIAKEARSAIGKAASVFVLYATSCANNIAISGKRKTLTAADVLQALEEMEF 78
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BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: A0A2T7NKY6_POMCA (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NKY6_POMCA)

HSP 1 Score: 77.0 bits (188), Expect = 5.090e-16
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AVV RIIK  +PE   ++KEAR AI KA +VF+LY T+CS+++ + GKR TIS+ DV  A+ E+EF
Sbjct:   10 LPNAVVGRIIKEAIPEGVNVSKEARLAISKAASVFVLYATSCSNNFALKGKRKTISAQDVLNAMEEMEF 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: A0A8J6EIA2_ELECQ (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EIA2_ELECQ)

HSP 1 Score: 76.3 bits (186), Expect = 6.320e-16
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AV+ RIIK  LPE   ++KEAR AI +A +VF+LY T+C++++ + GKR T++ TDV  A+ E+EF
Sbjct:   10 LPNAVITRIIKEALPEGVNVSKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNVTDVMAAVEEMEF 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: UPI0003F07252 (DNA polymerase epsilon subunit 3 n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F07252)

HSP 1 Score: 75.9 bits (185), Expect = 7.050e-16
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AV+ RIIK  LP+   ++KEAR AI +A +VF+LY T+C++++ + GKR T+++TDV  A+ E+EF
Sbjct:   10 LPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNATDVLSAMEEMEF 78
[Close]
BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Match: A0A6P7YFJ4_9AMPH (DNA polymerase epsilon subunit 3 n=2 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7YFJ4_9AMPH)

HSP 1 Score: 75.9 bits (185), Expect = 8.940e-16
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   19 LPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSSDYCISGKRSTISSTDVELALGELEF 225
            LP AV+ RIIK  LPE   ++KEAR AI +A +VF+LY T+C++++ + GKR T++S DV  A+ E+EF
Sbjct:   10 LPNAVITRIIKDALPEGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTLNSGDVLAAMEEMEF 78
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98954.22757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2DWQ9_9STRA7.310e-1961.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SN07_9STRA1.340e-1860.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
Q28J93_XENTR1.620e-1652.17DNA polymerase epsilon subunit 3 n=3 Tax=Anura Tax... [more]
D8LKB4_ECTSI2.070e-1654.29CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
V4CE76_LOTGI3.850e-1653.62CBFD_NFYB_HMF domain-containing protein n=1 Tax=Lo... [more]
A0A6P8IX46_ACTTE4.470e-1652.17DNA polymerase epsilon subunit 3-like n=1 Tax=Acti... [more]
A0A2T7NKY6_POMCA5.090e-1655.07CBFD_NFYB_HMF domain-containing protein n=1 Tax=Po... [more]
A0A8J6EIA2_ELECQ6.320e-1650.72CBFD_NFYB_HMF domain-containing protein n=1 Tax=El... [more]
UPI0003F072527.050e-1649.28DNA polymerase epsilon subunit 3 n=1 Tax=Elephantu... [more]
A0A6P7YFJ4_9AMPH8.940e-1650.72DNA polymerase epsilon subunit 3 n=2 Tax=Gymnophio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98954contigM-pyrifera_M_contig98954:341..694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue4.8e-13
Seed eggNOG ortholog2880.D8LKB4
Preferred namePOLE3
KEGG rclassRC02795
KEGG koko:K02326
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000123,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005671,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006272,GO:0006281,GO:0006301,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008622,GO:0008623,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019985,GO:0022402,GO:0022607,GO:0022616,GO:0031010,GO:0031055,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032502,GO:0032991,GO:0033260,GO:0033554,GO:0034061,GO:0034080,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0036211,GO:0040029,GO:0042276,GO:0042575,GO:0042766,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043596,GO:0043933,GO:0043966,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070603,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090399,GO:0097159,GO:0097549,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902292,GO:1902315,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsKOG0870@1,KOG0870@2759
EC2.7.7.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Exons3
Model size225
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98954.22757.1prot_M-pyrifera_M_contig98954.22757.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98954 341..694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.996857-CDS-M-pyrifera_M_contig98954:340..3971622816905.996857-CDS-M-pyrifera_M_contig98954:340..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98954 341..397 +
1692278247.7970233-CDS-M-pyrifera_M_contig98954:340..3971692278247.7970233-CDS-M-pyrifera_M_contig98954:340..397Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98954 341..397 +
1622816906.0076811-CDS-M-pyrifera_M_contig98954:472..5581622816906.0076811-CDS-M-pyrifera_M_contig98954:472..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98954 473..558 +
1692278247.8149502-CDS-M-pyrifera_M_contig98954:472..5581692278247.8149502-CDS-M-pyrifera_M_contig98954:472..558Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98954 473..558 +
1622816906.0183551-CDS-M-pyrifera_M_contig98954:612..6941622816906.0183551-CDS-M-pyrifera_M_contig98954:612..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98954 613..694 +
1692278247.824869-CDS-M-pyrifera_M_contig98954:612..6941692278247.824869-CDS-M-pyrifera_M_contig98954:612..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98954 613..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98954.22757.1

>prot_M-pyrifera_M_contig98954.22757.1 ID=prot_M-pyrifera_M_contig98954.22757.1|Name=mRNA_M-pyrifera_M_contig98954.22757.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MDEAEELPKAVVQRIIKSVLPENAQMTKEAREAIVKAGTVFILYLTACSS
DYCISGKRSTISSTDVELALGELEF
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mRNA from alignment at M-pyrifera_M_contig98954:341..694+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98954.22757.1 ID=mRNA_M-pyrifera_M_contig98954.22757.1|Name=mRNA_M-pyrifera_M_contig98954.22757.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig98954:341..694+ (Macrocystis pyrifera P11B4 male)
ATGGATGAAGCAGAAGAGTTGCCCAAAGCGGTGGTGCAACGCATCATCAA
GAGTGTTGTAAGTGGCTCTTCCCCTCCGTCTACTGAGTTGCGCCGCTTGG
ACACCTGCGCAGCACTGTTCTGACTCCAATAGCTCCCAGAGAACGCACAA
ATGACAAAGGAAGCAAGAGAGGCCATTGTAAAGGCGGGGACGGTCTTCAT
TCTCTACCTTACTGCTTGGTGAGTGCTTGGGCACGGGCGCCTCGTCCGGC
CCTCTTGCTGACGGCTGCACAGCTCGAGCGACTACTGCATTTCCGGAAAG
CGCTCTACCATCTCTAGCACTGACGTAGAGTTGGCCTTGGGGGAGCTGGA
GTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98954:341..694+

>mRNA_M-pyrifera_M_contig98954.22757.1 ID=mRNA_M-pyrifera_M_contig98954.22757.1|Name=mRNA_M-pyrifera_M_contig98954.22757.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig98954:341..694+ (Macrocystis pyrifera P11B4 male)
ATGGATGAAGCAGAAGAGTTGCCCAAAGCGGTGGTGCAACGCATCATCAA
GAGTGTTATGGATGAAGCAGAAGAGTTGCCCAAAGCGGTGGTGCAACGCA
TCATCAAGAGTGTTCTCCCAGAGAACGCACAAATGACAAAGGAAGCAAGA
GAGGCCATTGTAAAGGCGGGGACGGTCTTCATTCTCTACCTTACTGCTTG
CTCCCAGAGAACGCACAAATGACAAAGGAAGCAAGAGAGGCCATTGTAAA
GGCGGGGACGGTCTTCATTCTCTACCTTACTGCTTGCTCGAGCGACTACT
GCATTTCCGGAAAGCGCTCTACCATCTCTAGCACTGACGTAGAGTTGGCC
TTGGGGGAGCTGGAGTTCCTCGAGCGACTACTGCATTTCCGGAAAGCGCT
CTACCATCTCTAGCACTGACGTAGAGTTGGCCTTGGGGGAGCTGGAGTTC
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