mRNA_M-pyrifera_M_contig98898.22752.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98898.22752.1
Unique NamemRNA_M-pyrifera_M_contig98898.22752.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A7X5WL30_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WL30_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 9.220e-46
Identity = 103/221 (46.61%), Postives = 134/221 (60.63%), Query Frame = 1
Query:    1 GVLLDLDRIDTETVVRLLDGIASRRVLDVVGVEELTG---SATAADADATVGTLVPTPAPDVSELASTLETTTLGVATLARMIEPEFELIEPLVTQLQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSPGGFLELGTGSVDI 654
            GV+LD+ R+D   +  +L GI  RRVL    ++ L G   + TA  A   V  L P  APD++ LA+ L+ T   +A  A M+ P    + PL   L AA + DL P++A  Y   V   V E T G  + +GDRITLT R  DLPL + N QP  + V L+L+AEK+RFP G+++ +VLQPGEN   I VETLASGDARVT TL SP G +EL +G VDI
Sbjct:   74 GVVLDVTRVDPVALDVVLAGITERRVLRTSTLDRLLGLPPARTATGAPVRVE-LRPDTAPDLTTLAADLQVTRGALAAYAAMVAPADAPVAPLRRLLLAAASTDLDPEEASDYTTAVFDAVLEGTDGIGVVEGDRITLTSRTADLPLVLRNDQPLPVTVTLVLSAEKLRFPDGERQTVVLQPGENPREIRVETLASGDARVTATLTSPDGRIELASGIVDI 293          
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A2E0T0B7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T0B7_9ACTN)

HSP 1 Score: 132 bits (332), Expect = 4.600e-32
Identity = 86/220 (39.09%), Postives = 124/220 (56.36%), Query Frame = 1
Query:    1 GVLLDLDRIDTETVVRLLDGIASRRVLDVVGVEELTGSATAADADATV--GTLVPTPAPDVSELASTLETTTLGVATLARMIEPEFELIEPLVTQLQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSPGGFLELGTGSVDI 654
            G++LDL  +D   +  LLD I +   L +  V+EL     A DA+  V    L+  P  DV   AS L  T   +A+   M+ P    I PL T L+AA++++L  D  + +   V   VA  T+ F + +  R+TL  R   LP+TI N Q   +NV +  T+EK+RFP G++  LVL PG N + IPVET+ SGDAR+ +T+ SP G L+L  GSV++
Sbjct:  376 GIVLDLTTVDQVPLTLLLDLIEATDRLGLASVDELITRPPARDAEGAVLRVELLSAPPGDVGGAASDLRLTESVLASYTAMVSPADGPIAPLRTVLRAAMSDELDADVHRTFTDTVFDLVAAGTADFAVVESSRVTLATRAATLPVTIHNDQNLTMNVIVRTTSEKLRFPDGEELQLVLAPGLNELEIPVETVTSGDARILITVTSPDGRLDLANGSVNV 595          
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A3M2GNV2_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GNV2_ACTSX)

HSP 1 Score: 104 bits (259), Expect = 3.420e-22
Identity = 78/227 (34.36%), Postives = 112/227 (49.34%), Query Frame = 1
Query:    1 GVLLDLDRIDTETVVRLLDGIASRRVLDVVGVEELTGSATA------ADADATVGTLVPTPAPDVSELASTLETTTLGVATLARMIEPEFEL---IEPLVTQLQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSPGGFLELGTGSVDI 654
            G+++D    D  T+  LL G+ +  VL  V   +LT    A       +    V  L P P PD+         TT  +   A +IEP   L   +EPL  ++ AA    L       Y+A V A + +  +G  I D  R+TLT  R  +PLTI N +   L V L L +EK+RFP G +R ++L+PG N + + V+   +GDAR+ VTL SP G L +    +DI
Sbjct:  388 GLVVDARSADVVTLDLLLAGLRTATVLRPVTAVDLTRLPPARVDGPDGEGPTLVADLRPGPVPDLRLALFDRRLTTARLDAFASLIEPTGGLDTVVEPLAERIAAADDRSLPDRSRAAYLAAVRAAIDDAVTGVRIVDTGRVTLTAHRASVPLTIANERTQPLAVLLALDSEKLRFPEGAERVVLLEPGVNELAVLVDAPGTGDARLRVTLRSPRGDLVVADAVIDI 614          
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A6N9EZS0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9EZS0_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 1.550e-15
Identity = 50/135 (37.04%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  256 LIEPLVTQLQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSP--GGFLELGTGSVDI 654
            L+ PL T L  + +  LT  +   ++  V   VA+ T+G E      IT+T RR DLP+T+VN +P  + V L LT++ I F  G+     L+PG N + +P+E  ASG A V VT+ +P   G + L TG+ ++
Sbjct:  479 LVAPLRTLLAVSASRLLTTGERTEFLDAVDQQVAQGTTGVEFLPRGPITVTGRRADLPVTLVNSRPAEVTVALELTSDTISFTRGEISVHTLEPGRNDLLVPIEAAASGRASVLVTVTTPDEAGAITLATGTFNV 613          
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A2E6ULF6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6ULF6_9ACTN)

HSP 1 Score: 79.7 bits (195), Expect = 1.110e-13
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  280 LQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAE-KIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSP 615
            L+A VA +++ +  + Y+  V   V +    F  PD   + +T RR  +P T+ N     + V L L ++ ++ FP GD  D+VLQPG+N + IPV    SGDAR+ VT+ SP
Sbjct:  496 LEATVATEVSVEAGEAYLRAVYDGVLDVLDAFAAPDDQNVRMTSRRATVPYTVENRLAVPVQVRLHLESDGRLDFPEGDTLDVVLQPGDNRIPIPVGAKTSGDARLQVTVRSP 608          
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A6B1E9T1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E9T1_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 3.790e-13
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 1
Query:  256 LIEPLVTQLQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSP--GGFLELGTGSVDI 654
            L+ PL T L  + +  LT  +   ++  V   VA+ T+G E      IT+T RR +LP+T+VN +P    V + LTA ++R  GG++    L PG N + +PV + + G   VTV + +P   G + L TG+  +
Sbjct:  510 LVAPLRTLLAVSASRLLTTGERTGFLEAVDQQVAQGTTGVEFLPRGPITVTGRRAELPVTLVNSRPSETMVAVELTAHRLRATGGERFVFTLHPGRNDLAVPVVSTSPGSTLVTVLVTTPDEAGAIALTTGTFSV 644          
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Match: A0A6G0A8D6_9ACTN (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A8D6_9ACTN)

HSP 1 Score: 66.2 bits (160), Expect = 4.530e-9
Identity = 40/129 (31.01%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  268 LVTQLQAAVANDLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQPFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTVTLLSPGGFLELGTGSVDI 654
            L   L  + A  LT  + Q Y+  V + +    S    P    ITL  R   LPL++ N   F + V L + ++++ FP GD   ++LQPG+N +++ V T  SG+  + + + SP G L +    +DI
Sbjct:  487 LAELLLVSGARTLTASERQRYLDTVTSTIEGDLSQIRAPRQRTITLAAREAVLPLSLENRLEFPVEVSLEMDSDQLEFPDGDVMTVLLQPGDNRLSLKVTTRTSGEFPLVIEVTSPDGSLPVTLIDLDI 615          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98898.22752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7X5WL30_9ACTN9.220e-4646.61Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A2E0T0B7_9ACTN4.600e-3239.09Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3M2GNV2_ACTSX3.420e-2234.36Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
A0A6N9EZS0_9ACTN1.550e-1537.04Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E6ULF6_9ACTN1.110e-1337.17Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6B1E9T1_9ACTN3.790e-1334.07Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6G0A8D6_9ACTN4.530e-931.01Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98898contigM-pyrifera_M_contig98898:42..695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.734917-CDS-M-pyrifera_M_contig98898:41..6951622816905.734917-CDS-M-pyrifera_M_contig98898:41..695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98898 42..695 +
1692278247.6308768-CDS-M-pyrifera_M_contig98898:41..6951692278247.6308768-CDS-M-pyrifera_M_contig98898:41..695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98898 42..695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98898.22752.1prot_M-pyrifera_M_contig98898.22752.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98898 42..695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98898.22752.1

>prot_M-pyrifera_M_contig98898.22752.1 ID=prot_M-pyrifera_M_contig98898.22752.1|Name=mRNA_M-pyrifera_M_contig98898.22752.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
GVLLDLDRIDTETVVRLLDGIASRRVLDVVGVEELTGSATAADADATVGT
LVPTPAPDVSELASTLETTTLGVATLARMIEPEFELIEPLVTQLQAAVAN
DLTPDDAQVYVAGVAADVAEFTSGFEIPDGDRITLTDRRTDLPLTIVNPQ
PFALNVELLLTAEKIRFPGGDQRDLVLQPGENVVTIPVETLASGDARVTV
TLLSPGGFLELGTGSVDI
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mRNA from alignment at M-pyrifera_M_contig98898:42..695+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98898.22752.1 ID=mRNA_M-pyrifera_M_contig98898.22752.1|Name=mRNA_M-pyrifera_M_contig98898.22752.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig98898:42..695+ (Macrocystis pyrifera P11B4 male)
GGGGTTCTGCTCGATCTCGACCGGATCGACACCGAGACCGTCGTGCGCCT GCTCGACGGCATCGCCAGCCGCCGCGTCCTCGACGTGGTCGGTGTCGAGG AGCTCACCGGCTCCGCAACTGCAGCCGACGCCGACGCCACGGTCGGCACC CTCGTCCCCACCCCGGCTCCCGATGTCAGCGAGCTCGCATCGACGCTCGA AACCACCACCCTCGGCGTGGCCACGCTCGCTCGCATGATCGAGCCCGAGT TCGAGCTGATCGAGCCCCTCGTCACCCAGCTCCAAGCTGCCGTGGCGAAC GATCTCACGCCCGACGATGCCCAGGTCTACGTCGCCGGCGTCGCCGCCGA CGTCGCCGAGTTCACCTCGGGGTTCGAGATCCCCGACGGCGACCGCATCA CCCTCACCGACCGGCGTACCGATCTTCCCCTCACGATCGTCAACCCTCAG CCGTTCGCTCTCAACGTCGAACTCCTCCTGACCGCCGAGAAGATCCGCTT CCCGGGCGGCGACCAGCGAGACCTCGTCCTCCAGCCGGGAGAGAACGTCG TCACCATCCCGGTGGAGACCCTGGCCTCCGGCGACGCCCGCGTGACGGTC ACCCTGCTGTCGCCCGGCGGCTTCCTTGAGCTGGGTACGGGCAGCGTCGA CATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98898:42..695+

>mRNA_M-pyrifera_M_contig98898.22752.1 ID=mRNA_M-pyrifera_M_contig98898.22752.1|Name=mRNA_M-pyrifera_M_contig98898.22752.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig98898:42..695+ (Macrocystis pyrifera P11B4 male)
GGGGTTCTGCTCGATCTCGACCGGATCGACACCGAGACCGTCGTGCGCCT
GCTCGACGGCATCGCCAGCCGCCGCGTCCTCGACGTGGTCGGTGTCGAGG
AGCTCACCGGCTCCGCAACTGCAGCCGACGCCGACGCCACGGTCGGCACC
CTCGTCCCCACCCCGGCTCCCGATGTCAGCGAGCTCGCATCGACGCTCGA
AACCACCACCCTCGGCGTGGCCACGCTCGCTCGCATGATCGAGCCCGAGT
TCGAGCTGATCGAGCCCCTCGTCACCCAGCTCCAAGCTGCCGTGGCGAAC
GATCTCACGCCCGACGATGCCCAGGTCTACGTCGCCGGCGTCGCCGCCGA
CGTCGCCGAGTTCACCTCGGGGTTCGAGATCCCCGACGGCGACCGCATCA
CCCTCACCGACCGGCGTACCGATCTTCCCCTCACGATCGTCAACCCTCAG
CCGTTCGCTCTCAACGTCGAACTCCTCCTGACCGCCGAGAAGATCCGCTT
CCCGGGCGGCGACCAGCGAGACCTCGTCCTCCAGCCGGGAGAGAACGTCG
TCACCATCCCGGTGGAGACCCTGGCCTCCGGCGACGCCCGCGTGACGGTC
ACCCTGCTGTCGCCCGGCGGCTTCCTTGAGCTGGGTACGGGCAGCGTCGA
CATCGGGGTTCTGCTCGATCTCGACCGGATCGACACCGAGACCGTCGTGC
GCCTGCTCGACGGCATCGCCAGCCGCCGCGTCCTCGACGTGGTCGGTGTC
GAGGAGCTCACCGGCTCCGCAACTGCAGCCGACGCCGACGCCACGGTCGG
CACCCTCGTCCCCACCCCGGCTCCCGATGTCAGCGAGCTCGCATCGACGC
TCGAAACCACCACCCTCGGCGTGGCCACGCTCGCTCGCATGATCGAGCCC
GAGTTCGAGCTGATCGAGCCCCTCGTCACCCAGCTCCAAGCTGCCGTGGC
GAACGATCTCACGCCCGACGATGCCCAGGTCTACGTCGCCGGCGTCGCCG
CCGACGTCGCCGAGTTCACCTCGGGGTTCGAGATCCCCGACGGCGACCGC
ATCACCCTCACCGACCGGCGTACCGATCTTCCCCTCACGATCGTCAACCC
TCAGCCGTTCGCTCTCAACGTCGAACTCCTCCTGACCGCCGAGAAGATCC
GCTTCCCGGGCGGCGACCAGCGAGACCTCGTCCTCCAGCCGGGAGAGAAC
GTCGTCACCATCCCGGTGGAGACCCTGGCCTCCGGCGACGCCCGCGTGAC
GGTCACCCTGCTGTCGCCCGGCGGCTTCCTTGAGCTGGGTACGGGCAGCG
TCGACATC
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