mRNA_M-pyrifera_M_contig98887.22750.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98887.22750.1
Unique NamemRNA_M-pyrifera_M_contig98887.22750.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: UPI00065B82C8 (1-deoxypentalenic acid 11-beta-hydroxylase n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B82C8)

HSP 1 Score: 104 bits (259), Expect = 6.490e-24
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVG 333
            E SH  P    F+  YG +D E++ L GTGWFTE+P ++              +S    +W +  F AGDV++FGM+ AHMST N T  AR+SCD RWQP ++P+D R+ G
Sbjct:  189 EGSHRLPGFQKFQEKYGNMDAEKENLQGTGWFTEDPYEI--------------TSKFGGQWKTVDFSAGDVLIFGMRTAHMSTTNTTHLARISCDTRWQPASEPVDPRFCG 285          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: UPI001EE6018B (uncharacterized protein LOC124280599 n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE6018B)

HSP 1 Score: 102 bits (253), Expect = 4.200e-23
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVGAAADPADRVVAGLRALDEGSEQE 402
            E S+  P    F++TYG LD E   L GTGWFT +P ++              +     +W +  F+AGDV++FGM+ AHMST NLT  AR+SCD RWQP  +P D RY+     P   +  GL A DE S  E
Sbjct:  190 EGSNRLPGFDHFQNTYGNLDAEEARLKGTGWFTTDPFEI--------------TDKFGGQWKTTDFKAGDVMIFGMRTAHMSTCNLTNLARISCDTRWQPSDEPTDSRYMEGKDGP--ELKFGLHAKDESSNVE 307          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: UPI00148A7CB0 (1-deoxypentalenic acid 11-beta-hydroxylase-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A7CB0)

HSP 1 Score: 99.8 bits (247), Expect = 2.720e-22
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVG 333
            E S++ P+    + TYG+LD+E++ + GTGWFTE+P ++              +S    +W +  F+AGDV++F M+  HMST+NLT   R+SCD RWQP  +  D RYVG
Sbjct:  183 EGSNSLPSFRQLQETYGELDIEKENVEGTGWFTEDPFEI--------------TSKFGGKWKTSDFQAGDVLIFTMRTVHMSTSNLTDYVRISCDTRWQPADEAADPRYVG 279          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: A0A6C1PKD6_9SPIO (Phytanoyl-CoA dioxygenase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1PKD6_9SPIO)

HSP 1 Score: 99.0 bits (245), Expect = 4.390e-22
Identity = 48/111 (43.24%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVG 333
            E SH +P     R+TYG++DV+RD +   GWF+EN +++L                   RWL+  F+ GD++ FG+   H ST N T R RLSCDVR+QP ++PIDER+VG
Sbjct:  178 EGSHRAPGFEKLRATYGQMDVDRDNV--EGWFSENAEEILERFGG--------------RWLTADFKPGDILTFGLYTLHASTTNTTNRYRLSCDVRFQPSSEPIDERWVG 272          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: A0A8B8AC27_CRAVI (uncharacterized protein LOC111101058 n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8AC27_CRAVI)

HSP 1 Score: 98.6 bits (244), Expect = 7.420e-22
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVG 333
            E S+  P+    + TYG+LD+ER+G+ GTGWFTE+P ++              ++    +W +  F+AGDV++F ++  HMST+NLT   RLSCD RWQP  +  D R+VG
Sbjct:  183 EGSNCLPSFRRLQDTYGELDMEREGVEGTGWFTEDPFEI--------------TTKFGGKWKTSDFQAGDVLIFTVRTVHMSTSNLTDNIRLSCDTRWQPADEEADPRFVG 279          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: A0A845D7Q4_9CHLR (Phytanoyl-CoA dioxygenase family protein n=6 Tax=unclassified Caldilineaceae TaxID=1919254 RepID=A0A845D7Q4_9CHLR)

HSP 1 Score: 98.2 bits (243), Expect = 8.440e-22
Identity = 50/108 (46.30%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    7 SHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYV 330
            SH+ P+ +  R TYG++DV+RDG+   GWFT++P   + I  K   +           W +  F  GDV+LFGM   H ST NLT R RLSCDVR+QP +DP DER+V
Sbjct:  177 SHSLPSFARIRDTYGRMDVDRDGI--DGWFTKDP---MEIVEKFGGE-----------WQTSEFFMGDVILFGMHTMHASTTNLTNRFRLSCDVRFQPASDPADERWV 268          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: A0A814HQF7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814HQF7_9BILA)

HSP 1 Score: 97.8 bits (242), Expect = 3.020e-21
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   37 RSTYGKLDVERDGLVGTGWFTENPDDLLRI--AAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYV 330
            ++TY  +DV+RD L GTGWFTE+P +  ++  A   ++     SS +D  W +  F AGDV++F M+  HMS+ NLT + RLSCD RWQP  +P D R++
Sbjct:  214 QNTYANMDVDRDKLQGTGWFTEDPMEFYQLNEALPNKDQFGHRSSHSDPVWKTTAFSAGDVLIFTMRTIHMSSVNLTNKLRLSCDTRWQPSNEPADPRFI 313          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: UPI001E1D7C94 (uncharacterized protein LOC123551431 isoform X2 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7C94)

HSP 1 Score: 97.1 bits (240), Expect = 3.040e-21
Identity = 48/111 (43.24%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVG 333
            E S+  P      STY ++DVE   L G+GWFT +P D+                    +W +  +EAGDV++FGM   HMSTANLT   R+SCD RWQP ++P D RYVG
Sbjct:  186 EGSNRLPGFDKLHSTYSQVDVEDINLNGSGWFTTDPFDITYQFGG--------------QWKTTKYEAGDVLIFGMNTVHMSTANLTDLVRISCDTRWQPASEPADPRYVG 282          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: UPI000A2A91B0 (uncharacterized protein LOC110250675 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A91B0)

HSP 1 Score: 96.3 bits (238), Expect = 5.920e-21
Identity = 52/155 (33.55%), Postives = 84/155 (54.19%), Query Frame = 1
Query:    1 ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYVGAAADPADRVVAGLRALDEGSEQEKEAMEGKRGKGIREFRKEWGL 465
            E SH  P  S F+ TYG +D+E++G+VG+GWFTE+ +++              ++    +W +  F+AGDV++F  +  HMS+ N +  AR+SCD RW P+++  D RYVG    P +R   G+          +E   G+R   +   +K+WG 
Sbjct:  183 EGSHRLPEFSYFQETYGSMDLEKEGVVGSGWFTEDANEI--------------TTRFGGQWKTANFQAGDVLVFTQRTVHMSSVNTSHYARISCDTRWLPMSEIADSRYVGDFDSP-ERPKYGIEG--------RETKTGERNTTMDTKKKQWGF 314          
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Match: A0A816GKP2_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816GKP2_ADIRI)

HSP 1 Score: 94.0 bits (232), Expect = 6.910e-21
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   37 RSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDEEPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQPVADPIDERYV 330
            ++TY  +DV+RD L GTGWFT++P +  ++     +  E   +SA + W +  F AGD+++F M+  HMS+ NLT   RLSCD RWQP  +P+D R++
Sbjct:   74 QNTYANMDVDRDKLQGTGWFTQDPMEFYQL----NDVSETKDASAPV-WKTTAFSAGDILIFTMRTIHMSSINLTNTLRLSCDTRWQPANEPVDPRFI 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98887.22750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00065B82C86.490e-2443.241-deoxypentalenic acid 11-beta-hydroxylase n=1 Tax... [more]
UPI001EE6018B4.200e-2341.79uncharacterized protein LOC124280599 n=2 Tax=Halio... [more]
UPI00148A7CB02.720e-2241.441-deoxypentalenic acid 11-beta-hydroxylase-like n=... [more]
A0A6C1PKD6_9SPIO4.390e-2243.24Phytanoyl-CoA dioxygenase n=1 Tax=Spirochaetaceae ... [more]
A0A8B8AC27_CRAVI7.420e-2241.44uncharacterized protein LOC111101058 n=1 Tax=Crass... [more]
A0A845D7Q4_9CHLR8.440e-2246.30Phytanoyl-CoA dioxygenase family protein n=6 Tax=u... [more]
A0A814HQF7_9BILA3.020e-2145.00Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
UPI001E1D7C943.040e-2143.24uncharacterized protein LOC123551431 isoform X2 n=... [more]
UPI000A2A91B05.920e-2133.55uncharacterized protein LOC110250675 n=1 Tax=Exaip... [more]
A0A816GKP2_ADIRI6.910e-2142.86Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98887contigM-pyrifera_M_contig98887:224..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.7
Seed ortholog evalue1.3e-15
Seed eggNOG ortholog45351.EDO44135
Hectar predicted targeting categoryother localisation
EggNOG OGs2CRQ4@1,2R8R3@2759,39HQN@33154,3C2JQ@33208
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.6740887-CDS-M-pyrifera_M_contig98887:223..6941622816905.6740887-CDS-M-pyrifera_M_contig98887:223..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98887 224..694 -
1692278247.6103969-CDS-M-pyrifera_M_contig98887:223..6941692278247.6103969-CDS-M-pyrifera_M_contig98887:223..694Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98887 224..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98887.22750.1prot_M-pyrifera_M_contig98887.22750.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98887 224..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98887.22750.1

>prot_M-pyrifera_M_contig98887.22750.1 ID=prot_M-pyrifera_M_contig98887.22750.1|Name=mRNA_M-pyrifera_M_contig98887.22750.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
ERSHTSPALSTFRSTYGKLDVERDGLVGTGWFTENPDDLLRIAAKTREDE
EPSSSSADLRWLSGVFEAGDVVLFGMQLAHMSTANLTKRARLSCDVRWQP
VADPIDERYVGAAADPADRVVAGLRALDEGSEQEKEAMEGKRGKGIREFR
KEWGLE*
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mRNA from alignment at M-pyrifera_M_contig98887:224..694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98887.22750.1 ID=mRNA_M-pyrifera_M_contig98887.22750.1|Name=mRNA_M-pyrifera_M_contig98887.22750.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig98887:224..694- (Macrocystis pyrifera P11B4 male)
GAGCGTTCCCATACCTCCCCTGCACTCTCCACGTTTCGTTCCACCTATGG AAAGCTGGACGTGGAGAGAGATGGTTTGGTGGGAACAGGGTGGTTCACGG AGAACCCAGACGACCTCCTCAGAATAGCAGCGAAAACGCGTGAAGATGAG GAGCCTTCTTCTTCGTCGGCTGATCTGCGTTGGTTGAGTGGTGTGTTTGA AGCAGGGGACGTGGTGTTATTCGGGATGCAGCTTGCTCACATGAGTACTG CCAACTTGACAAAGCGAGCGCGGCTGTCGTGTGATGTCCGCTGGCAGCCT GTGGCAGACCCCATCGATGAGAGATACGTGGGAGCAGCTGCAGACCCCGC AGATCGGGTTGTGGCTGGACTGCGAGCGCTTGACGAGGGTTCTGAGCAGG AGAAAGAGGCGATGGAAGGGAAGAGAGGCAAGGGCATTCGTGAGTTTCGC AAAGAGTGGGGCTTGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98887:224..694-

>mRNA_M-pyrifera_M_contig98887.22750.1 ID=mRNA_M-pyrifera_M_contig98887.22750.1|Name=mRNA_M-pyrifera_M_contig98887.22750.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig98887:224..694- (Macrocystis pyrifera P11B4 male)
GAGCGTTCCCATACCTCCCCTGCACTCTCCACGTTTCGTTCCACCTATGG
AAAGCTGGACGTGGAGAGAGATGGTTTGGTGGGAACAGGGTGGTTCACGG
AGAACCCAGACGACCTCCTCAGAATAGCAGCGAAAACGCGTGAAGATGAG
GAGCCTTCTTCTTCGTCGGCTGATCTGCGTTGGTTGAGTGGTGTGTTTGA
AGCAGGGGACGTGGTGTTATTCGGGATGCAGCTTGCTCACATGAGTACTG
CCAACTTGACAAAGCGAGCGCGGCTGTCGTGTGATGTCCGCTGGCAGCCT
GTGGCAGACCCCATCGATGAGAGATACGTGGGAGCAGCTGCAGACCCCGC
AGATCGGGTTGTGGCTGGACTGCGAGCGCTTGACGAGGGTTCTGAGCAGG
AGAAAGAGGCGATGGAAGGGAAGAGAGGCAAGGGCATTCGTGAGTTTCGC
AAAGAGTGGGGCTTGGAGTGAGAGCGTTCCCATACCTCCCCTGCACTCTC
CACGTTTCGTTCCACCTATGGAAAGCTGGACGTGGAGAGAGATGGTTTGG
TGGGAACAGGGTGGTTCACGGAGAACCCAGACGACCTCCTCAGAATAGCA
GCGAAAACGCGTGAAGATGAGGAGCCTTCTTCTTCGTCGGCTGATCTGCG
TTGGTTGAGTGGTGTGTTTGAAGCAGGGGACGTGGTGTTATTCGGGATGC
AGCTTGCTCACATGAGTACTGCCAACTTGACAAAGCGAGCGCGGCTGTCG
TGTGATGTCCGCTGGCAGCCTGTGGCAGACCCCATCGATGAGAGATACGT
GGGAGCAGCTGCAGACCCCGCAGATCGGGTTGTGGCTGGACTGCGAGCGC
TTGACGAGGGTTCTGAGCAGGAGAAAGAGGCGATGGAAGGGAAGAGAGGC
AAGGGCATTCGTGAGTTTCGCAAAGAGTGGGGCTTGGAGTGA
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