mRNA_M-pyrifera_M_contig98864.22747.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig98864.22747.1
Unique Name	mRNA_M-pyrifera_M_contig98864.22747.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5X4U7_PRUPE (ULP_PROTEASE domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5X4U7_PRUPE)

HSP 1 Score: 268 bits (684), Expect = 4.110e-90
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAK+ETVYFLDPLPG+RVVDEEAKNIVNSALKIYNTHI RAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVF I
Sbjct:   23 RSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKRETVYFLDPLPGNRVVDEEAKNIVNSALKIYNTHIARAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFCI 155

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BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5VIC6_PRUPE (ULP_PROTEASE domain-containing protein n=16 Tax=Prunus persica TaxID=3760 RepID=M5VIC6_PRUPE)

HSP 1 Score: 270 bits (689), Expect = 9.180e-90
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRLVAARLQKTDGEQ+FMMPYNPG HWILLIVRAKKET+YFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVF I
Sbjct:   99 RSRLVAARLQKTDGEQLFMMPYNPGCHWILLIVRAKKETIYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFCI 231

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BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5WTZ1_PRUPE (ULP_PROTEASE domain-containing protein n=4 Tax=Prunus TaxID=3754 RepID=M5WTZ1_PRUPE)

HSP 1 Score: 268 bits (684), Expect = 2.280e-86
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAK+ETVYFLDPLPG+RVVDEEAKNIVNSALKIYNTHI RAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVF I
Sbjct:  297 RSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKRETVYFLDPLPGNRVVDEEAKNIVNSALKIYNTHIARAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFCI 429

[Close]

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5XU77_PRUPE (ULP_PROTEASE domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5XU77_PRUPE)

HSP 1 Score: 267 bits (682), Expect = 2.910e-86
Identity = 127/133 (95.49%), Postives = 131/133 (98.50%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAK+ETVYFLDPLPG+RVVDEEAKNIVNSALK+YNTHI RAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVF I
Sbjct:  281 RSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKRETVYFLDPLPGNRVVDEEAKNIVNSALKLYNTHIARAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFCI 413

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BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5W337_PRUPE (ULP_PROTEASE domain-containing protein (Fragment) n=4 Tax=Prunus persica TaxID=3760 RepID=M5W337_PRUPE)

HSP 1 Score: 268 bits (684), Expect = 3.730e-85
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAK+ETVYFLDPLPG+RVVDEEAKNIVNSALKIYNTHI RAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVF I
Sbjct:  403 RSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKRETVYFLDPLPGNRVVDEEAKNIVNSALKIYNTHIARAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFCI 535

[Close]

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5XSW3_PRUPE (ULP_PROTEASE domain-containing protein n=4 Tax=Prunus persica TaxID=3760 RepID=M5XSW3_PRUPE)

HSP 1 Score: 247 bits (631), Expect = 1.090e-81
Identity = 117/133 (87.97%), Postives = 127/133 (95.49%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            KSRL+AARLQKTDGEQIF+MPYNPGR+WILLIVRAK+ETVYFLDPLPG+ VVDEEAKNIVNSA+KIYN+HI R GRK VIWKTLSGTPKQPSNVECGYYVMRF++DIIMDPSLGFE KVRRNYLHTF+VVF I
Sbjct:   47 KSRLLAARLQKTDGEQIFLMPYNPGRNWILLIVRAKRETVYFLDPLPGNHVVDEEAKNIVNSAIKIYNSHIARPGRKAVIWKTLSGTPKQPSNVECGYYVMRFIKDIIMDPSLGFEKKVRRNYLHTFYVVFCI 179

[Close]

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5W6G7_PRUPE (ULP_PROTEASE domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5W6G7_PRUPE)

HSP 1 Score: 248 bits (632), Expect = 5.350e-81
Identity = 117/133 (87.97%), Postives = 128/133 (96.24%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRL+AARLQ+TDGEQIF+MPYNPGR+WILLIVRAK+ETVYFLDPLPG+RVVDEEAKNIVNSA+KIYN+HI R GRK VIWKTLSGTPKQPS+VECGYYVMRFMRDIIMDPSLGFE KVRRNYLHTF+VVF I
Sbjct:  106 RSRLLAARLQRTDGEQIFLMPYNPGRNWILLIVRAKRETVYFLDPLPGNRVVDEEAKNIVNSAIKIYNSHIARPGRKAVIWKTLSGTPKQPSSVECGYYVMRFMRDIIMDPSLGFEKKVRRNYLHTFYVVFCI 238

[Close]

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5WE57_PRUPE (ULP_PROTEASE domain-containing protein (Fragment) n=1 Tax=Prunus persica TaxID=3760 RepID=M5WE57_PRUPE)

HSP 1 Score: 244 bits (624), Expect = 6.520e-81
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENK 354
            +SRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHI RAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENK
Sbjct:   33 RSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIARAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENK 150

[Close]

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5W8R6_PRUPE (ULP_PROTEASE domain-containing protein n=4 Tax=Prunus persica TaxID=3760 RepID=M5W8R6_PRUPE)

HSP 1 Score: 243 bits (621), Expect = 1.480e-80
Identity = 116/133 (87.22%), Postives = 126/133 (94.74%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFI 399
            +SRLVAARLQ+TDGEQIFMMPYNPGRHWILLIVRAK+ETVYFLDPL  +R+VDEEAKNIVNSA+KIYN+HI R+GRK VIWKTLSGTPKQPS+VECGYYVMRFMRDIIMDPSL FE KVRRNYLHTF+VVF I
Sbjct:   20 RSRLVAARLQRTDGEQIFMMPYNPGRHWILLIVRAKRETVYFLDPLTVNRLVDEEAKNIVNSAIKIYNSHIARSGRKAVIWKTLSGTPKQPSSVECGYYVMRFMRDIIMDPSLAFEKKVRRNYLHTFYVVFCI 152

[Close]

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Match: M5VTQ0_PRUPE (ULP_PROTEASE domain-containing protein n=3 Tax=Prunus persica TaxID=3760 RepID=M5VTQ0_PRUPE)

HSP 1 Score: 244 bits (624), Expect = 3.780e-80
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1

Query:    1 KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENK 354
            +SRLVAARLQKTDGEQ+FMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGR GRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENK
Sbjct:   86 RSRLVAARLQKTDGEQLFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHRVVDEEAKNIVNSALKIYNTHIGRVGRKNVIWKTLSGTPKQPSNVECGYYVMRFMRDIIMDPSLGFENK 203

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig98864.22747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
M5X4U7_PRUPE	4.110e-90	96.24	ULP_PROTEASE domain-containing protein n=1 Tax=Pru...	[more]
M5VIC6_PRUPE	9.180e-90	96.24	ULP_PROTEASE domain-containing protein n=16 Tax=Pr...	[more]
M5WTZ1_PRUPE	2.280e-86	96.24	ULP_PROTEASE domain-containing protein n=4 Tax=Pru...	[more]
M5XU77_PRUPE	2.910e-86	95.49	ULP_PROTEASE domain-containing protein n=1 Tax=Pru...	[more]
M5W337_PRUPE	3.730e-85	96.24	ULP_PROTEASE domain-containing protein (Fragment) ...	[more]
M5XSW3_PRUPE	1.090e-81	87.97	ULP_PROTEASE domain-containing protein n=4 Tax=Pru...	[more]
M5W6G7_PRUPE	5.350e-81	87.97	ULP_PROTEASE domain-containing protein n=1 Tax=Pru...	[more]
M5WE57_PRUPE	6.520e-81	98.31	ULP_PROTEASE domain-containing protein (Fragment) ...	[more]
M5W8R6_PRUPE	1.480e-80	87.22	ULP_PROTEASE domain-containing protein n=4 Tax=Pru...	[more]
M5VTQ0_PRUPE	3.780e-80	97.46	ULP_PROTEASE domain-containing protein n=3 Tax=Pru...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig98864	contig	M-pyrifera_M_contig98864:3..639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	270.4
Seed ortholog evalue	4.5e-70
Seed eggNOG ortholog	3760.EMJ08124
Hectar predicted targeting category	other localisation
EggNOG free text desc.	source UniProtKB
EggNOG OGs	2DXH4@1,2S6SE@2759,37ZXZ@33090,3GHUK@35493
COG Functional cat.	S
Best tax level	Streptophyta
Best eggNOG OG	NA\|NA\|NA
Exons	2
Model size	402
Cds size	402
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816905.4624078-CDS-M-pyrifera_M_contig98864:2..76	1622816905.4624078-CDS-M-pyrifera_M_contig98864:2..76	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig98864 3..76 +
1692278247.4915018-CDS-M-pyrifera_M_contig98864:2..76	1692278247.4915018-CDS-M-pyrifera_M_contig98864:2..76	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig98864 3..76 +
1622816905.477403-CDS-M-pyrifera_M_contig98864:311..639	1622816905.477403-CDS-M-pyrifera_M_contig98864:311..639	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig98864 312..639 +
1692278247.50706-CDS-M-pyrifera_M_contig98864:311..639	1692278247.50706-CDS-M-pyrifera_M_contig98864:311..639	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig98864 312..639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig98864.22747.1	prot_M-pyrifera_M_contig98864.22747.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig98864 3..639 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig98864:3..639+
coding sequence from alignment at M-pyrifera_M_contig98864:3..639+

protein sequence of mRNA_M-pyrifera_M_contig98864.22747.1

>prot_M-pyrifera_M_contig98864.22747.1 ID=prot_M-pyrifera_M_contig98864.22747.1|Name=mRNA_M-pyrifera_M_contig98864.22747.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
KSRLVAARLQKTDGEQIFMMPYNPGRHWILLIVRAKKETVYFLDPLPGHR
VVDEEAKNIVNSALKIYNTHIGRAGRKNVIWKTLSGTPKQPSNVECGYYV
MRFMRDIIMDPSLGFENKVRRNYLHTFHVVFFIF

mRNA from alignment at M-pyrifera_M_contig98864:3..639+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig98864.22747.1 ID=mRNA_M-pyrifera_M_contig98864.22747.1|Name=mRNA_M-pyrifera_M_contig98864.22747.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=637bp|location=Sequence derived from alignment at M-pyrifera_M_contig98864:3..639+ (Macrocystis pyrifera P11B4 male)
AAATCACGACTGGTAGCAGCTCGACTTCAGAAGACTGATGGTGAACAGAT
TTTCATGATGCCTTACAATCCAGGGTTAGTCTCCTTAACAGGATTTTGTT
TTTATGATTTTCAATAAATGACAGCGTATAAACTAACCACGTCGGTGTTT
TATTTTATTGAGTCGTTTGAAACAACTAACCACATCGGTATTTACTTGTC
GTCGTGATAAATATATAATGTCGTCGTTTTCTAATTTATTTCGTCGTGTG
AACTATTATAACACGTCGTTTTTGTAAATAACCGTCGTTTTTATATTAAT
TTTGTGCAGCCGTCATTGGATCTTGCTGATTGTAAGAGCAAAGAAGGAGA
CCGTCTATTTTCTGGATCCTCTGCCAGGTCATCGTGTGGTCGACGAAGAG
GCGAAAAACATCGTGAACAGTGCTTTAAAAATATATAATACCCACATAGG
CCGAGCAGGACGTAAAAATGTAATTTGGAAAACTCTCTCAGGCACACCAA
AGCAACCCAGCAATGTCGAATGCGGGTATTATGTGATGCGCTTCATGAGG
GACATCATCATGGATCCTTCCTTGGGGTTTGAGAATAAGGTAAGAAGAAA
TTACCTTCATACATTTCACGTCGTTTTTTTTATTTTT

Coding sequence (CDS) from alignment at M-pyrifera_M_contig98864:3..639+

>mRNA_M-pyrifera_M_contig98864.22747.1 ID=mRNA_M-pyrifera_M_contig98864.22747.1|Name=mRNA_M-pyrifera_M_contig98864.22747.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig98864:3..639+ (Macrocystis pyrifera P11B4 male)
AAATCACGACTGGTAGCAGCTCGACTTCAGAAGACTGATGGTGAACAGAT
TTTCATGATGCCTTACAATCCAGGAAATCACGACTGGTAGCAGCTCGACT
TCAGAAGACTGATGGTGAACAGATTTTCATGATGCCTTACAATCCAGGCC
GTCATTGGATCTTGCTGATTGTAAGAGCAAAGAAGGAGACCGTCTATTTT
CTGGATCCTCTGCCAGGTCATCGTGTGGTCGACGAAGAGGCGAAAAACAT
CGTGAACAGTGCTTTAAAAATATATAATACCCACATAGGCCGAGCAGGAC
GTAAAAATGTAATTTGGAAAACTCTCTCAGGCACACCAAAGCAACCCAGC
AATGTCGAATGCGGGTATTATGTGATGCGCTTCATGAGGGACATCATCAT
GGATCCTTCCTTGGGGTTTGAGAATAAGGTAAGAAGAAATTACCTTCATA
CATTTCACGTCGTTTTTTTTATTTTTCCGTCATTGGATCTTGCTGATTGT
AAGAGCAAAGAAGGAGACCGTCTATTTTCTGGATCCTCTGCCAGGTCATC
GTGTGGTCGACGAAGAGGCGAAAAACATCGTGAACAGTGCTTTAAAAATA
TATAATACCCACATAGGCCGAGCAGGACGTAAAAATGTAATTTGGAAAAC
TCTCTCAGGCACACCAAAGCAACCCAGCAATGTCGAATGCGGGTATTATG
TGATGCGCTTCATGAGGGACATCATCATGGATCCTTCCTTGGGGTTTGAG
AATAAGGTAAGAAGAAATTACCTTCATACATTTCACGTCGTTTTTTTTAT
TTTT