mRNA_M-pyrifera_M_contig98804.22738.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98804.22738.1
Unique NamemRNA_M-pyrifera_M_contig98804.22738.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98804.22738.1 vs. uniprot
Match: A0A7S0RYD6_9CHLO (Calcium uniporter protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RYD6_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 2.570e-6
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 1 
Query:  106 LSEYFELAGRCGLTH--AEAEEVLEHLHSAGVVLHFATDPDVEDIVLVKAEEVLDDVFGDL--GLEGPQKTFAKAQRSRKDAELAHLRAEIEPLQQVRSLVLDRARKTADRAMWGGFAGLLGVTGFYVYLTTTALSWDSVEPLVWI 531
            L ++ ++A   G+ +  AEA EVL  LH AGVVLH        D+V ++AEE+ + V   L  G E  Q+   K +    D +  H   E             ++R  A+  +W G   L G    +++LT   LSWD +EP  +I
Sbjct:  105 LDKFTQMAINSGVANNSAEATEVLNVLHKAGVVLHH------HDLVYLRAEEIAEMVMLMLPGGKESAQQKLQKVENELADLDKVHDDLE------------KKSRSVANMFLWSGLFILTGQFLGFIWLTWWELSWDVMEPFGYI 232
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98804.22738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S0RYD6_9CHLO2.570e-631.51Calcium uniporter protein n=1 Tax=Chlamydomonas le... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98804contigM-pyrifera_M_contig98804:15..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue9.7e-20
Seed eggNOG ortholog2880.D7G585
Preferred nameCCDC109B
KEGG rclassRC00209,RC02895
KEGG koko:K06125,ko:K14831,ko:K20858
KEGG TC1.A.77.1
KEGG ReactionR05000,R05616,R07273
KEGG Pathwayko00130,ko01100,ko01110,ko04020,ko04218,ko04621,map00130,map01100,map01110,map04020,map04218,map04621
KEGG ModuleM00128
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0002791,GO:0002793,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005246,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006839,GO:0006851,GO:0006873,GO:0006874,GO:0006875,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007165,GO:0007275,GO:0007369,GO:0007610,GO:0007611,GO:0007613,GO:0007615,GO:0008016,GO:0008150,GO:0008200,GO:0008324,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009889,GO:0009987,GO:0010646,GO:0010647,GO:0010817,GO:0015075,GO:0015085,GO:0015267,GO:0015291,GO:0015292,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0019222,GO:0019722,GO:0019725,GO:0019855,GO:0019866,GO:0019932,GO:0022607,GO:0022803,GO:0022804,GO:0022838,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030029,GO:0030036,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032024,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033500,GO:0034220,GO:0034702,GO:0034703,GO:0034704,GO:0035556,GO:0036444,GO:0042592,GO:0042593,GO:0042802,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044057,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046873,GO:0046883,GO:0046887,GO:0048518,GO:0048522,GO:0048583,GO:0048598,GO:0048729,GO:0048856,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051259,GO:0051260,GO:0051560,GO:0051561,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060026,GO:0060027,GO:0060401,GO:0060429,GO:0061041,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070509,GO:0070588,GO:0070838,GO:0071840,GO:0072375,GO:0072503,GO:0072507,GO:0072511,GO:0080134,GO:0090087,GO:0090276,GO:0090277,GO:0097435,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:0099106,GO:1902495,GO:1903034,GO:1903426,GO:1903522,GO:1903530,GO:1903532,GO:1904951,GO:1990246,GO:1990351,GO:1990542,GO:2000377
EggNOG free text desc.uniporter activity
EggNOG OGsKOG2966@1,KOG2966@2759
EC2.5.1.39
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko02000,ko03009
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816905.0380409-CDS-M-pyrifera_M_contig98804:14..5481622816905.0380409-CDS-M-pyrifera_M_contig98804:14..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98804 15..548 -
1692278247.2318707-CDS-M-pyrifera_M_contig98804:14..5481692278247.2318707-CDS-M-pyrifera_M_contig98804:14..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98804 15..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98804.22738.1prot_M-pyrifera_M_contig98804.22738.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98804 15..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98804.22738.1

>prot_M-pyrifera_M_contig98804.22738.1 ID=prot_M-pyrifera_M_contig98804.22738.1|Name=mRNA_M-pyrifera_M_contig98804.22738.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
SALDVRELSVPSLLRLGATVLTRKALLARKERALRLSEYFELAGRCGLTH
AEAEEVLEHLHSAGVVLHFATDPDVEDIVLVKAEEVLDDVFGDLGLEGPQ
KTFAKAQRSRKDAELAHLRAEIEPLQQVRSLVLDRARKTADRAMWGGFAG
LLGVTGFYVYLTTTALSWDSVEPLVWIT
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mRNA from alignment at M-pyrifera_M_contig98804:15..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98804.22738.1 ID=mRNA_M-pyrifera_M_contig98804.22738.1|Name=mRNA_M-pyrifera_M_contig98804.22738.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig98804:15..548- (Macrocystis pyrifera P11B4 male)
AGTGCGCTGGACGTGCGGGAATTGTCAGTGCCGAGTCTGCTGCGGCTGGG
AGCCACGGTGCTGACCCGAAAGGCGCTGCTGGCCAGGAAGGAGCGGGCGC
TGCGGCTGTCCGAGTACTTTGAGCTGGCTGGCCGGTGCGGACTAACGCAT
GCGGAAGCGGAAGAAGTGCTGGAGCACCTCCACAGCGCGGGCGTGGTGCT
GCACTTTGCCACCGATCCCGACGTGGAAGACATTGTGCTGGTCAAGGCAG
AGGAGGTGCTGGATGACGTGTTCGGGGACTTGGGCCTGGAAGGACCTCAG
AAGACGTTCGCCAAGGCGCAGCGGAGCCGGAAAGATGCGGAATTGGCGCA
CTTGCGCGCCGAAATAGAGCCGTTGCAGCAGGTGCGCAGTCTGGTGCTGG
ACCGGGCGAGGAAAACCGCCGACAGAGCCATGTGGGGCGGGTTTGCGGGT
TTGCTTGGCGTGACGGGCTTCTACGTGTACTTGACGACCACGGCGCTGTC
GTGGGACAGCGTGGAGCCGCTGGTGTGGATCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98804:15..548-

>mRNA_M-pyrifera_M_contig98804.22738.1 ID=mRNA_M-pyrifera_M_contig98804.22738.1|Name=mRNA_M-pyrifera_M_contig98804.22738.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig98804:15..548- (Macrocystis pyrifera P11B4 male)
AGTGCGCTGGACGTGCGGGAATTGTCAGTGCCGAGTCTGCTGCGGCTGGG
AGCCACGGTGCTGACCCGAAAGGCGCTGCTGGCCAGGAAGGAGCGGGCGC
TGCGGCTGTCCGAGTACTTTGAGCTGGCTGGCCGGTGCGGACTAACGCAT
GCGGAAGCGGAAGAAGTGCTGGAGCACCTCCACAGCGCGGGCGTGGTGCT
GCACTTTGCCACCGATCCCGACGTGGAAGACATTGTGCTGGTCAAGGCAG
AGGAGGTGCTGGATGACGTGTTCGGGGACTTGGGCCTGGAAGGACCTCAG
AAGACGTTCGCCAAGGCGCAGCGGAGCCGGAAAGATGCGGAATTGGCGCA
CTTGCGCGCCGAAATAGAGCCGTTGCAGCAGGTGCGCAGTCTGGTGCTGG
ACCGGGCGAGGAAAACCGCCGACAGAGCCATGTGGGGCGGGTTTGCGGGT
TTGCTTGGCGTGACGGGCTTCTACGTGTACTTGACGACCACGGCGCTGTC
GTGGGACAGCGTGGAGCCGCTGGTGTGGATCACTAGTGCGCTGGACGTGC
GGGAATTGTCAGTGCCGAGTCTGCTGCGGCTGGGAGCCACGGTGCTGACC
CGAAAGGCGCTGCTGGCCAGGAAGGAGCGGGCGCTGCGGCTGTCCGAGTA
CTTTGAGCTGGCTGGCCGGTGCGGACTAACGCATGCGGAAGCGGAAGAAG
TGCTGGAGCACCTCCACAGCGCGGGCGTGGTGCTGCACTTTGCCACCGAT
CCCGACGTGGAAGACATTGTGCTGGTCAAGGCAGAGGAGGTGCTGGATGA
CGTGTTCGGGGACTTGGGCCTGGAAGGACCTCAGAAGACGTTCGCCAAGG
CGCAGCGGAGCCGGAAAGATGCGGAATTGGCGCACTTGCGCGCCGAAATA
GAGCCGTTGCAGCAGGTGCGCAGTCTGGTGCTGGACCGGGCGAGGAAAAC
CGCCGACAGAGCCATGTGGGGCGGGTTTGCGGGTTTGCTTGGCGTGACGG
GCTTCTACGTGTACTTGACGACCACGGCGCTGTCGTGGGACAGCGTGGAG
CCGCTGGTGTGGATCACT
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