mRNA_M-pyrifera_M_contig98796.22735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98796.22735.1
Unique NamemRNA_M-pyrifera_M_contig98796.22735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A7S0WT91_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WT91_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 1.150e-11
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRHTCSQCFRDKPAPR-----ICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            M +R   +R  PP +   ++  V + + L+LV  +GPTSFL+RE+ G E   K V +G R  CS C    PA       +C HL F + +VLR+P +NPL +QLSLTD E++ VLR
Sbjct:    1 MGERLAPWRPRPPQEVLEVLQQVPD-TVLYLVHRIGPTSFLVRED-GSEIKRK-VTIGSRPCCS-C--TPPAANGGCKELCLHLLFVMVKVLRVPPSNPLVWQLSLTDRELEEVLR 110          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A835SYL6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835SYL6_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 1.440e-11
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRHTCSQCFRDKP---APRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            MA+RA  +RS P  D   L+  V     LFLV   GPTSF++REE G E   K V +G R TCS C    P      +C H  F + +VLR+P  NPL +QLSL+D E++ VLR
Sbjct:    1 MAERAAPWRSKPSQDVVELLQRVGAVQ-LFLVQRPGPTSFVVREE-GSEVKRK-VQIGSRITCS-CSPVGPNGTCKELCLHTLFVMVKVLRVPVGNPLLWQLSLSDRELEEVLR 110          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A7S4E3C9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E3C9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.420e-11
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   73 ERSCLFLVATLGPTSFLLREETGGEGDGKG---------VFVGHRHTCSQCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            ER  + LV+T GPTSF++ E+   +GD            V +GHRH+CS C        +C H  F L +VLR+P  NPL FQ SL ++E++ VLR
Sbjct:   64 ERRRMLLVSTTGPTSFVVAEQNAPDGDEASERPAREKHRVKIGHRHSCS-CGHLGDG-ELCHHALFILLKVLRVPKDNPLAFQTSLLESELEAVLR 157          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A8J2X2M5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2M5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.510e-11
Identity = 40/96 (41.67%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   73 ERSCLFLVATLGPTSFLLREETGGEGDGKG---------VFVGHRHTCSQCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            ER  + LV+T GPTSF++ E+   +GD            V +GHRH+CS C        +C H  F L +VLR+P  NPL FQ SL ++E++ VLR
Sbjct:   41 ERRRMLLVSTTGPTSFVVAEQNAPDGDEASERPAREKHRVKIGHRHSCS-CGHLGDG-ELCHHALFILLKVLRVPKDNPLAFQTSLLESELEAVLR 134          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A835W3V1_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W3V1_CHLIN)

HSP 1 Score: 67.4 bits (163), Expect = 9.280e-11
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRHTCS--QCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            MA+RA  +RS P  +   L+  V     LFLV   GPTSF++REE G E   K V +G R TCS      +     +C H  F + +VLR+P  NPL +QLSL+D E++ VLR
Sbjct:    1 MAERAAPWRSKPSQEVVELLQRVGAVQ-LFLVQRPGPTSFVVREE-GSEVKRK-VQIGSRITCSCSAVGANGTCKELCLHTLFVMVKVLRVPVGNPLLWQLSLSDRELEEVLR 110          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A7S2IQM4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2IQM4_9DINO)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-10
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKG-VFVGHRHTCSQCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVL 330
            MA R   +R  P   ++  V    ++S  F++  +GPT F+LR+E    GD K   FVG  H+CS C R       C H  F L +VL++P  +PLC+Q SLTDAE+  VL
Sbjct:    1 MAGRLKPYRRKPTDAFEK-VRDQAQQSRFFVLQQIGPTGFVLRDE----GDQKHRAFVGAEHSCS-CGRC--GDEHCVHTAFVLLKVLKVPPDSPLCWQPSLTDAEIGEVL 103          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A8J911_CHLRE (Predicted protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J911_CHLRE)

HSP 1 Score: 67.0 bits (162), Expect = 1.190e-10
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRHTCS--QCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            MA+RA  +RS P  +   L+  V     LFLV   GPTSF++REE G E   K V +G R TCS      +     +C H  F + +VLR+P  NPL +QLSL+D E++ VLR
Sbjct:    1 MAERAAPWRSKPSQEVVELLQRVGAVQ-LFLVQRPGPTSFVVREE-GSEVKRK-VQIGSRITCSCSAVGANGTCKELCLHSLFVMVKVLRVPVGNPLLWQLSLSDRELEEVLR 110          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A2K3DP53_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DP53_CHLRE)

HSP 1 Score: 67.0 bits (162), Expect = 1.270e-10
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRHTCS--QCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            MA+RA  +RS P  +   L+  V     LFLV   GPTSF++REE G E   K V +G R TCS      +     +C H  F + +VLR+P  NPL +QLSL+D E++ VLR
Sbjct:    1 MAERAAPWRSKPSQEVVELLQRVGAVQ-LFLVQRPGPTSFVVREE-GSEVKRK-VQIGSRITCSCSAVGANGTCKELCLHSLFVMVKVLRVPVGNPLLWQLSLSDRELEEVLR 110          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A8J4GQW1_9CHLO (Uncharacterized protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GQW1_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRH--TCSQCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVLR 333
            MA+R   +RS P  +   L+  V     LFLV   GPTSF++REE G E   K V +G R   +CS    +     +C H+ F + +VLR+P +NPL +QLSL+D E++ VLR
Sbjct:    1 MAERVSPWRSKPSQEVVDLLQQVGTLQ-LFLVQRPGPTSFIVREE-GSEVKRK-VQIGSRMICSCSPVGANGTCKELCLHILFVMVKVLRVPVSNPLLWQLSLSDRELEEVLR 110          
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Match: A0A7S1WBF6_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WBF6_ALECA)

HSP 1 Score: 63.9 bits (154), Expect = 5.570e-10
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   76 RSCLFLVATLGPTSFLLREETGGEGDGKGVFVGHRHTCS--QCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLSLTDAEVDRVL 330
            +S  F++  +GPT F+LR+   GE      FVG  H+CS  +C  +      C H  F L +VL++P  NPLC+Q SLTDAE+  VL
Sbjct:   21 QSRFFVLQQIGPTGFVLRD---GEDHKHRAFVGAEHSCSCGRCGEEH-----CVHTAFVLLKVLKVPPDNPLCWQPSLTDAEIGEVL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98796.22735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0WT91_9CHLO1.150e-1142.24Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A835SYL6_9CHLO1.440e-1145.61Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A7S4E3C9_9STRA3.420e-1141.67Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2X2M5_9STRA3.510e-1141.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835W3V1_CHLIN9.280e-1143.36Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A7S2IQM4_9DINO1.130e-1040.54Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A8J911_CHLRE1.190e-1043.36Predicted protein n=1 Tax=Chlamydomonas reinhardti... [more]
A0A2K3DP53_CHLRE1.270e-1043.36Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4GQW1_9CHLO1.700e-1041.59Uncharacterized protein n=2 Tax=Volvox reticulifer... [more]
A0A7S1WBF6_ALECA5.570e-1042.53Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98796contigM-pyrifera_M_contig98796:71..463 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog3055.EDO99586
KEGG koko:K15716
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.8685913-CDS-M-pyrifera_M_contig98796:70..2411622816904.8685913-CDS-M-pyrifera_M_contig98796:70..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98796 71..241 -
1692278247.105847-CDS-M-pyrifera_M_contig98796:70..2411692278247.105847-CDS-M-pyrifera_M_contig98796:70..241Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98796 71..241 -
1622816904.8801541-CDS-M-pyrifera_M_contig98796:301..4631622816904.8801541-CDS-M-pyrifera_M_contig98796:301..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98796 302..463 -
1692278247.1169531-CDS-M-pyrifera_M_contig98796:301..4631692278247.1169531-CDS-M-pyrifera_M_contig98796:301..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98796 302..463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98796.22735.1prot_M-pyrifera_M_contig98796.22735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98796 71..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98796.22735.1

>prot_M-pyrifera_M_contig98796.22735.1 ID=prot_M-pyrifera_M_contig98796.22735.1|Name=mRNA_M-pyrifera_M_contig98796.22735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MAKRAVAFRSSPPADWDALVSGVFERSCLFLVATLGPTSFLLREETGGEG
DGKGVFVGHRHTCSQCFRDKPAPRICRHLCFALHRVLRIPHTNPLCFQLS
LTDAEVDRVLR
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mRNA from alignment at M-pyrifera_M_contig98796:71..463-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98796.22735.1 ID=mRNA_M-pyrifera_M_contig98796.22735.1|Name=mRNA_M-pyrifera_M_contig98796.22735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig98796:71..463- (Macrocystis pyrifera P11B4 male)
ATGGCGAAGAGGGCAGTTGCCTTTCGTAGCAGTCCCCCTGCAGACTGGGA TGCATTGGTTTCTGGTGTATTTGAGCGCAGTTGTTTGTTTCTGGTCGCCA CTCTTGGGCCCACGTCGTTTCTGTTGCGGGAAGAGACAGGAGGGGAAGGG GACGGGAAGGGGGTAGGGGGTGGGAGAGAGGGGGGGAGAGAGGGGGGGAG AGAGGGGAGTAAGCGGGTGAAGGTGTTTGTGGGACATCGCCACACATGTT CGCAGTGTTTTCGAGACAAACCCGCTCCTCGAATCTGCAGACACCTCTGT TTTGCACTTCATCGCGTTCTTCGCATCCCTCACACGAACCCCTTGTGCTT CCAACTCTCCCTCACAGATGCTGAGGTCGATAGGGTGTTGCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98796:71..463-

>mRNA_M-pyrifera_M_contig98796.22735.1 ID=mRNA_M-pyrifera_M_contig98796.22735.1|Name=mRNA_M-pyrifera_M_contig98796.22735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig98796:71..463- (Macrocystis pyrifera P11B4 male)
ATGGCGAAGAGGGCAGTTGCCTTTCGTAGCAGTCCCCCTGCAGACTGGGA
TGCATTGGTTTCTGGTGTATTTGAGCGCAGTTGTTTGTTTCTGGTCGCCA
CTCTTGGGCCCACGTCGTTTCTGTTGCGGGAAGAGACAGGAGGGGAAGGG
GACGGGAAGGGGATGGCGAAGAGGGCAGTTGCCTTTCGTAGCAGTCCCCC
TGCAGACTGGGATGCATTGGTTTCTGGTGTATTTGAGCGCAGTTGTTTGT
TTCTGGTCGCCACTCTTGGGCCCACGTCGTTTCTGTTGCGGGAAGAGACA
GGAGGGGAAGGGGACGGGAAGGGGGTGTTTGTGGGACATCGCCACACATG
TTCGCAGTGTTTTCGAGACAAACCCGCTCCTCGAATCTGCAGACACCTCT
GTTTTGCACTTCATCGCGTTCTTCGCATCCCTCACACGAACCCCTTGTGC
TTCCAACTCTCCCTCACAGATGCTGAGGTCGATAGGGTGTTGCGGGTGTT
TGTGGGACATCGCCACACATGTTCGCAGTGTTTTCGAGACAAACCCGCTC
CTCGAATCTGCAGACACCTCTGTTTTGCACTTCATCGCGTTCTTCGCATC
CCTCACACGAACCCCTTGTGCTTCCAACTCTCCCTCACAGATGCTGAGGT
CGATAGGGTGTTGCGG
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