mRNA_M-pyrifera_M_contig98781.22731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98781.22731.1
Unique NamemRNA_M-pyrifera_M_contig98781.22731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A7C2XBH9_9BACT (Malectin domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C2XBH9_9BACT)

HSP 1 Score: 165 bits (418), Expect = 1.460e-48
Identity = 86/138 (62.32%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEVV 414
            Y DT G  W  DQ FNTG+T +    IAGTNDD L+QSERWD  AAPEL YSLP+ NGSY V L+FAEIY+G    G RVFD+L+EG L L++ D+F  VG  TA V     TVSDGVL+IEF HV ENPKISAIEV+
Sbjct:  117 YTDTQGRQWSADQRFNTGNTASVTNPIAGTNDDVLFQSERWDPPAAPELAYSLPVTNGSYRVNLYFAEIYNGCFSVGCRVFDVLIEGVLVLNDLDIFREVGSLTALVKTFDVTVSDGVLNIEFRHVVENPKISAIEVI 254          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A6P1M9G2_9BACT (Choice-of-anchor D domain-containing protein n=1 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1M9G2_9BACT)

HSP 1 Score: 156 bits (395), Expect = 1.370e-41
Identity = 77/138 (55.80%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNF-NTGSTYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            Y D  G+ W  D  F NTG+ Y++N  + GTN +PLYQ ERWD    PE++YS P+  GSYVVRLHFAEI+ G A  G+R+FD+L+EGQ AL N+D+ +  GF+TA V  L T V+D  LDIEF H  +NPKISAIEV
Sbjct:  280 YTDPDGNYWQTDDGFYNTGTAYSTNVTVNGTNMEPLYQDERWDDTNTPEMVYSFPVEPGSYVVRLHFAEIFPGNAEPGSRIFDVLIEGQEALQNYDIVADTGFQTAGVKELFTQVADNSLDIEFVHKVQNPKISAIEV 417          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A1G2G1N9_9BACT (PA14 domain-containing protein n=1 Tax=Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_01_45_13 TaxID=1802112 RepID=A0A1G2G1N9_9BACT)

HSP 1 Score: 152 bits (385), Expect = 3.020e-40
Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            ++DT G+TW  D +FNTG+T+++ AAI+ T DD LYQ+ERWD   APEL Y++P+ANG Y+V LHFAEI+ GA   GARVFD+ +EG   L N D+++  G  TA       TV+DG LDI F HV +NPKI+ IEV
Sbjct:   62 FVDTGGNTWEADAHFNTGNTFSTAAAISNTADDLLYQTERWDDAPAPELAYAIPVANGDYMVTLHFAEIWSGAFSIGARVFDVGMEGITVLDNIDIYAEAGANTALTKTFTATVTDGALDILFTHVVQNPKIAGIEV 198          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: UPI0018672918 (malectin domain-containing carbohydrate-binding protein n=1 Tax=Luteolibacter sp. NBU1238 TaxID=2776705 RepID=UPI0018672918)

HSP 1 Score: 146 bits (369), Expect = 4.410e-38
Identity = 71/137 (51.82%), Postives = 94/137 (68.61%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            Y+D LG+TW+ D  +NTG   TS+ AIA T+DDP+YQS R+D     EL YS P+ +G Y +RLHFAE++ GA   G RVFD+ +E QLAL + D+F+  GF TA  + +P TVS G L IEF HV +NP ++ IEV
Sbjct: 1523 YLDLLGNTWVADHGYNTGVAETSSDAIANTDDDPIYQSRRFDRSHGAELKYSFPLPDGEYELRLHFAEVWTGATAPGIRVFDVKVEDQLALDDFDIFAEAGFATAVSIPIPVTVSGGQLTIEFLHVIQNPTLAGIEV 1659          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A858RKQ0_9BACT (Uncharacterized protein n=1 Tax=Luteolibacter luteus TaxID=2728835 RepID=A0A858RKQ0_9BACT)

HSP 1 Score: 140 bits (352), Expect = 8.590e-36
Identity = 72/138 (52.17%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGA-AVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            ++D+L  TW  D  FNTG T  S  AIAGT +D +YQ+ R+D     EL YSLP+ +G Y +RLHFAE++ GA  V GARVFD+ +E QL L N D+F+T GF TA VV +P TV+ G L IEF H   NP ++ IEV
Sbjct: 1494 FVDSLSQTWQADTGFNTGITEASTGAIAGTVEDGIYQTRRFDRSYGAELKYSLPLPDGEYELRLHFAEVWSGANGVPGARVFDVKVEDQLVLDNFDIFATAGFATALVVPIPVTVTGGNLTIEFFHGVNNPTLAGIEV 1631          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A3B0XDI4_9ZZZZ (Cell division protein FtsI [Peptidoglycan synthetase] n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0XDI4_9ZZZZ)

HSP 1 Score: 139 bits (350), Expect = 1.530e-35
Identity = 74/139 (53.24%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTG--STYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            Y D+ G  W  D+ FNTG  S   +NA   GT D  LYQS RWD   APEL YS  + NGSY VRLHFA+ Y G      RVFD+ LE QLAL N D+F+ VG   A +  L T V+DG LDIEF H  ENP+I AIE+
Sbjct:  202 YTDSAGQLWQADKGFNTGNLSGSAANATYRGTADQVLYQSARWDADDAPELRYSFDVPNGSYAVRLHFADSYSGTQGEDLRVFDVALEDQLALENLDIFAEVGGNAALIKTLTTQVNDGTLDIEFLHQVENPEIRAIEI 340          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A7C1XQA6_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1XQA6_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 2.770e-35
Identity = 73/140 (52.14%), Postives = 91/140 (65.00%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTG--STYTSNAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEVV 414
            Y D   + W  D  FNTG  ST    AAIAGT DDPLYQ +R+D  AAPEL YS  + NG Y V LHFAE Y GA   GARVF + +EG   +SN D++ TVG   A V ++P TV+DG +DI+F H  E+P ++AIE+V
Sbjct:   85 YTDGASNVWSADTGFNTGRISTAGLGAAIAGTTDDPLYQVQRFDVSAAPELSYSFAVPNGDYTVNLHFAENYSGAFSVGARVFSVQMEGATVISNLDIYGTVGANVALVRSVPVTVADGQIDIQFIHGVEDPIVAAIEIV 224          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A3B0X049_9ZZZZ (CBM6 domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0X049_9ZZZZ)

HSP 1 Score: 138 bits (347), Expect = 3.530e-35
Identity = 72/139 (51.80%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTS--NAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            Y D+ G  W  D+ FNTG   +S   A I+GT+D  LYQS RWD GAAPEL YS  + +G+Y VRLHFA+ Y G   +G RVFD+LLE QLAL N D+F+ VG  T  +  L   V+DG LDI+F    +NP+I AIE+
Sbjct:   49 YTDSAGHLWQADKGFNTGRLSSSAIGAQISGTDDQVLYQSGRWDTGAAPELRYSFDVPDGAYTVRLHFADTYSGTQGDGLRVFDVLLEDQLALENLDIFAEVGGNTVLLKTLTVQVNDGTLDIKFLRQVQNPEIRAIEI 187          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A3B0WYN2_9ZZZZ (CBM6 domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0WYN2_9ZZZZ)

HSP 1 Score: 136 bits (343), Expect = 1.170e-34
Identity = 74/139 (53.24%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTS--NAAIAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEV 411
            Y D+ G  W  D  FNTG   +S   A I GT+D  LYQS RWD GAAPEL Y   + +G Y VRL+FA+ Y G    G RVFD++LE  L L N D+FS VG  TA V  L T VSDG LDIEF H  +NP+I AIE+
Sbjct:   49 YTDSTGQLWQADAGFNTGRLSSSAIGAQITGTDDLVLYQSGRWDVGAAPELRYRFNVPDGVYTVRLYFADSYSGTQGEGLRVFDVMLENDLTLENLDIFSEVGGNTALVKTLSTQVSDGALDIEFIHQVQNPEIRAIEI 187          
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Match: A0A7C1TTX4_9GAMM (Uncharacterized protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TTX4_9GAMM)

HSP 1 Score: 135 bits (339), Expect = 4.720e-34
Identity = 69/140 (49.29%), Postives = 88/140 (62.86%), Query Frame = 1
Query:    1 YIDTLGDTWLEDQNFNTGSTYTSNAA--IAGTNDDPLYQSERWDGGAAPELIYSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTVGFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEVV 414
            Y D +G  W  D  FNTG    +     I GT DDPLYQ +R+D  A PEL YS  + NG Y V LHFAE Y GA   GARVF + +EG  A+ + D+F TVG  T+ V ++P TVSDG L+I+F H  ENP ++A+E+V
Sbjct:   44 YTDGVGKVWAADTGFNTGKKSKAGVGVDIIGTTDDPLYQLQRYDAPAVPELSYSFTVPNGDYTVNLHFAENYSGAFGAGARVFSVAMEGVTAIGSLDIFGTVGANTSLVRSVPVTVSDGQLNIQFIHEVENPIVAAVEIV 183          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98781.22731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2XBH9_9BACT1.460e-4862.32Malectin domain-containing protein n=1 Tax=Acidoba... [more]
A0A6P1M9G2_9BACT1.370e-4155.80Choice-of-anchor D domain-containing protein n=1 T... [more]
A0A1G2G1N9_9BACT3.020e-4054.01PA14 domain-containing protein n=1 Tax=Candidatus ... [more]
UPI00186729184.410e-3851.82malectin domain-containing carbohydrate-binding pr... [more]
A0A858RKQ0_9BACT8.590e-3652.17Uncharacterized protein n=1 Tax=Luteolibacter lute... [more]
A0A3B0XDI4_9ZZZZ1.530e-3553.24Cell division protein FtsI [Peptidoglycan syntheta... [more]
A0A7C1XQA6_9GAMM2.770e-3552.14Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]
A0A3B0X049_9ZZZZ3.530e-3551.80CBM6 domain-containing protein n=1 Tax=hydrotherma... [more]
A0A3B0WYN2_9ZZZZ1.170e-3453.24CBM6 domain-containing protein n=1 Tax=hydrotherma... [more]
A0A7C1TTX4_9GAMM4.720e-3449.29Uncharacterized protein (Fragment) n=1 Tax=Gammapr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98781contigM-pyrifera_M_contig98781:282..695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.7
Seed ortholog evalue8e-30
Seed eggNOG ortholog1396141.BATP01000038_gene1189
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Carbohydrate-binding protein of the ER
EggNOG OGs2IVWU@203494,46TIB@74201,COG2982@1,COG2982@2,COG3227@1,COG3227@2,COG3291@1,COG3291@2
COG Functional cat.M
Best tax levelVerrucomicrobiae
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.7155821-CDS-M-pyrifera_M_contig98781:281..6951622816904.7155821-CDS-M-pyrifera_M_contig98781:281..695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98781 282..695 -
1692278247.0255415-CDS-M-pyrifera_M_contig98781:281..6951692278247.0255415-CDS-M-pyrifera_M_contig98781:281..695Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98781 282..695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98781.22731.1prot_M-pyrifera_M_contig98781.22731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98781 282..695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98781.22731.1

>prot_M-pyrifera_M_contig98781.22731.1 ID=prot_M-pyrifera_M_contig98781.22731.1|Name=mRNA_M-pyrifera_M_contig98781.22731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
YIDTLGDTWLEDQNFNTGSTYTSNAAIAGTNDDPLYQSERWDGGAAPELI
YSLPIANGSYVVRLHFAEIYDGAAVNGARVFDILLEGQLALSNHDVFSTV
GFETANVVNLPTTVSDGVLDIEFGHVTENPKISAIEVV
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mRNA from alignment at M-pyrifera_M_contig98781:282..695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98781.22731.1 ID=mRNA_M-pyrifera_M_contig98781.22731.1|Name=mRNA_M-pyrifera_M_contig98781.22731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig98781:282..695- (Macrocystis pyrifera P11B4 male)
TACATCGACACGCTCGGCGACACGTGGTTGGAAGATCAGAACTTCAATAC AGGGAGTACCTACACATCGAATGCGGCAATCGCCGGTACCAACGATGATC CCTTGTACCAATCCGAGCGGTGGGATGGCGGCGCCGCACCGGAGCTCATC TATAGTTTGCCTATTGCTAATGGCTCGTACGTAGTGCGCCTACATTTCGC GGAGATTTACGATGGAGCTGCCGTGAATGGGGCGAGAGTGTTTGACATTC TTCTCGAAGGTCAACTGGCACTTTCAAACCACGATGTCTTCAGTACGGTC GGTTTTGAAACCGCAAATGTCGTGAATTTGCCCACAACGGTCAGCGATGG CGTACTCGACATTGAATTTGGCCACGTAACCGAAAATCCAAAAATCAGTG CGATCGAAGTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98781:282..695-

>mRNA_M-pyrifera_M_contig98781.22731.1 ID=mRNA_M-pyrifera_M_contig98781.22731.1|Name=mRNA_M-pyrifera_M_contig98781.22731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig98781:282..695- (Macrocystis pyrifera P11B4 male)
TACATCGACACGCTCGGCGACACGTGGTTGGAAGATCAGAACTTCAATAC
AGGGAGTACCTACACATCGAATGCGGCAATCGCCGGTACCAACGATGATC
CCTTGTACCAATCCGAGCGGTGGGATGGCGGCGCCGCACCGGAGCTCATC
TATAGTTTGCCTATTGCTAATGGCTCGTACGTAGTGCGCCTACATTTCGC
GGAGATTTACGATGGAGCTGCCGTGAATGGGGCGAGAGTGTTTGACATTC
TTCTCGAAGGTCAACTGGCACTTTCAAACCACGATGTCTTCAGTACGGTC
GGTTTTGAAACCGCAAATGTCGTGAATTTGCCCACAACGGTCAGCGATGG
CGTACTCGACATTGAATTTGGCCACGTAACCGAAAATCCAAAAATCAGTG
CGATCGAAGTCGTGTACATCGACACGCTCGGCGACACGTGGTTGGAAGAT
CAGAACTTCAATACAGGGAGTACCTACACATCGAATGCGGCAATCGCCGG
TACCAACGATGATCCCTTGTACCAATCCGAGCGGTGGGATGGCGGCGCCG
CACCGGAGCTCATCTATAGTTTGCCTATTGCTAATGGCTCGTACGTAGTG
CGCCTACATTTCGCGGAGATTTACGATGGAGCTGCCGTGAATGGGGCGAG
AGTGTTTGACATTCTTCTCGAAGGTCAACTGGCACTTTCAAACCACGATG
TCTTCAGTACGGTCGGTTTTGAAACCGCAAATGTCGTGAATTTGCCCACA
ACGGTCAGCGATGGCGTACTCGACATTGAATTTGGCCACGTAACCGAAAA
TCCAAAAATCAGTGCGATCGAAGTCGTG
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