mRNA_M-pyrifera_M_contig98762.22728.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98762.22728.1
Unique NamemRNA_M-pyrifera_M_contig98762.22728.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: K7F4W2_PELSI (Importin N-terminal domain-containing protein n=83 Tax=Sauria TaxID=32561 RepID=K7F4W2_PELSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.700e-20
Identity = 50/133 (37.59%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQVGS 399
            QI PYV  +++ L  LW+ ++ H +++ +++ +L  L+  LGA    L   L+P+I+ STD+ QP   Y+LEDGL +W  T+  +    P LL +F  +  +++ S+E+L  C +I+ AY+ L  AEFLQV S
Sbjct:  597 QIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLIQGLGADSKNLYPFLLPIIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSALLELSSENLRTCFKIINAYIFLSSAEFLQVYS 729          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A8C6XHT0_NAJNA (Importin 11 n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6XHT0_NAJNA)

HSP 1 Score: 95.5 bits (236), Expect = 3.660e-20
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQVGS 399
            QI PYV  +++ L  LW+ ++ H +++ +++ +L  L+  LGA    L + L+P+I+ STD+ QP   Y+LEDGL +W  T+  +    P LL +F  +  +++ S+E+L+ C +I+ AY+ L  +EFLQ+ S
Sbjct:  575 QIRPYVACLVQYLPLLWKQSEEHNMLRCAILTTLIHLIQGLGAESKNLYTFLLPIIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLQTCFKIINAYLFLSSSEFLQIYS 707          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A8C6XH18_NAJNA (Importin 11 n=1 Tax=Naja naja TaxID=35670 RepID=A0A8C6XH18_NAJNA)

HSP 1 Score: 95.5 bits (236), Expect = 3.670e-20
Identity = 48/133 (36.09%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQVGS 399
            QI PYV  +++ L  LW+ ++ H +++ +++ +L  L+  LGA    L + L+P+I+ STD+ QP   Y+LEDGL +W  T+  +    P LL +F  +  +++ S+E+L+ C +I+ AY+ L  +EFLQ+ S
Sbjct:  575 QIRPYVACLVQYLPLLWKQSEEHNMLRCAILTTLIHLIQGLGAESKNLYTFLLPIIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLQTCFKIINAYLFLSSSEFLQIYS 707          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A812BBH0_SEPPH (Importin-11 n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BBH0_SEPPH)

HSP 1 Score: 93.6 bits (231), Expect = 1.740e-19
Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALF---PALLPVIQAS----------TEHLECCLRILEAYVLLGKAEFLQ 390
            QI PY + ++  L  LWE A  H +++ +++ +L +LV  LG   + L + L+PVIR STD+ Q    Y+ EDGL +W  T+  +    P LL LF   PALL + Q S          TE+L+ CL+I+EAYVLLG  EF+Q
Sbjct:  615 QIRPYADQLILYLPLLWEHASDHNMLRCAILTTLIRLVKGLGTNCNTLYNFLIPVIRLSTDVTQQFHVYLKEDGLDLWLETLHNSPVLTPDLLELFTAMPALLGMSQMSVTGKRMLELGTENLKVCLKIIEAYVLLGPKEFMQ 757          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A0L8FVE5_OCTBM (Uncharacterized protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8FVE5_OCTBM)

HSP 1 Score: 90.9 bits (224), Expect = 7.790e-19
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQ 390
            QI PY + ++  L  LW+    H +++ +++ +L +LV  LG + + L   L+PVIR STD+ Q    Y+ EDGL +W  T+  +    P LL LF A+  +++   E L+ CL+I+EAYV+LG+ EF+Q
Sbjct:   17 QIRPYADQLILYLPLLWDSD--HNMLRCAILTTLIRLVKGLGTSCNTLYDFLIPVIRLSTDVTQQFHVYLKEDGLDLWLETLHNSPVMTPGLLDLFTAMPAILEFGNEDLKVCLKIVEAYVVLGQKEFMQ 144          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: UPI00051B2A9D (importin-11 n=1 Tax=Cuculus canorus TaxID=55661 RepID=UPI00051B2A9D)

HSP 1 Score: 91.7 bits (226), Expect = 8.130e-19
Identity = 48/131 (36.64%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQV 393
            QI P+VE +++ L  LW+ ++ H +++ +++ +L  LV  LGA    L   L+PVI+ STD+ QP   Y+LEDGL +W  T+  +    P LL +F  +  +++ S+E+L+ C +I+ AY+ L  + FLQ+
Sbjct:  569 QIRPHVECLIQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLQNCFKIINAYIFLSSSGFLQM 699          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A850WIR5_PIACA (IPO11 protein (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A850WIR5_PIACA)

HSP 1 Score: 91.3 bits (225), Expect = 1.030e-18
Identity = 47/131 (35.88%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQV 393
            Q+ P+VE +++ L  LW+ ++ H +++ +++ +L  LV  LGA    L   L+PVI+ STD+ QP   Y+LEDGL +W  T+  +    P LL +F  +  +++ S+E+L+ C +I+ AY+ L  + FLQ+
Sbjct:  417 QVRPHVECLIQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLQNCFKIINAYIFLSSSGFLQM 547          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A7E6F7V6_OCTVU (importin-11 isoform X1 n=2 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6F7V6_OCTVU)

HSP 1 Score: 90.9 bits (224), Expect = 1.520e-18
Identity = 50/130 (38.46%), Postives = 80/130 (61.54%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQ 390
            QI PY + ++  L  LW+    H +++ +++ +L +LV  LG + + L   L+PVIR STD+ Q    Y+ EDGL +W  T+  +    P LL LF A+  +++   E L+ CL+I+EAYV+LG+ EF+Q
Sbjct:  600 QIRPYADQLILYLPLLWDSD--HNMLRCAILTTLIRLVKGLGTSCNTLYDFLIPVIRLSTDVTQQFHVYLKEDGLDLWLETLHNSPVMTPGLLDLFTAMPAILEFGNEDLKVCLKIVEAYVVLGQKEFMQ 727          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A7K5A3E2_9AVES (IPO11 protein (Fragment) n=1 Tax=Centropus unirufus TaxID=1118519 RepID=A0A7K5A3E2_9AVES)

HSP 1 Score: 89.4 bits (220), Expect = 5.220e-18
Identity = 47/131 (35.88%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQV 393
            QI P+VE +++ L  LW+  + H +++ +++ +L  LV  LGA    L   L+PVI+ STD+ QP   Y+LEDGL +W  T+  +    P LL +F  +  +++ S+E+L+ C +I+ AY+ L    FL++
Sbjct:  568 QIRPHVECLIQYLPLLWKQGEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCLTPELLRIFQNMSALLELSSENLQNCFKIINAYIFLSSPGFLEM 698          
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Match: A0A210QZ76_MIZYE (Importin-11 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QZ76_MIZYE)

HSP 1 Score: 89.0 bits (219), Expect = 7.140e-18
Identity = 43/130 (33.08%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLSLLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALLPVIQASTEHLECCLRILEAYVLLGKAEFLQ 390
            QI P+  ++++ L SLW  +  H +++ +++ +L  +V   G+  S +   L+P+I+ STD+ Q    Y++EDGL +W  T+L A      LL LF  +  ++   TE+L  CL++++AY++LG  +F+Q
Sbjct:  594 QIRPHTSSLIQYLPSLWHESADHNMLRCAILTTLIHIVQGFGSISSDMYDFLLPIIQMSTDVTQDQHIYLMEDGLELWHVTLLNAPTITEQLLQLFKNMAGLLTLGTENLRTCLKVIQAYIVLGPRDFMQ 723          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98762.22728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K7F4W2_PELSI2.700e-2037.59Importin N-terminal domain-containing protein n=83... [more]
A0A8C6XHT0_NAJNA3.660e-2036.09Importin 11 n=1 Tax=Naja naja TaxID=35670 RepID=A0... [more]
A0A8C6XH18_NAJNA3.670e-2036.09Importin 11 n=1 Tax=Naja naja TaxID=35670 RepID=A0... [more]
A0A812BBH0_SEPPH1.740e-1941.26Importin-11 n=2 Tax=Sepia pharaonis TaxID=158019 R... [more]
A0A0L8FVE5_OCTBM7.790e-1938.46Uncharacterized protein n=1 Tax=Octopus bimaculoid... [more]
UPI00051B2A9D8.130e-1936.64importin-11 n=1 Tax=Cuculus canorus TaxID=55661 Re... [more]
A0A850WIR5_PIACA1.030e-1835.88IPO11 protein (Fragment) n=2 Tax=Neognathae TaxID=... [more]
A0A7E6F7V6_OCTVU1.520e-1838.46importin-11 isoform X1 n=2 Tax=Octopus vulgaris Ta... [more]
A0A7K5A3E2_9AVES5.220e-1835.88IPO11 protein (Fragment) n=1 Tax=Centropus unirufu... [more]
A0A210QZ76_MIZYE7.140e-1833.08Importin-11 n=2 Tax=Pectinidae TaxID=6566 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98762contigM-pyrifera_M_contig98762:248..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score97.8
Seed ortholog evalue4.2e-18
Seed eggNOG ortholog42254.XP_004608528.1
Preferred nameIPO11
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005730,GO:0005737,GO:0005829,GO:0006606,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGs38EA7@33154,3BE4T@33208,3CXXI@33213,3JB8M@40674,48BEJ@7711,492I6@7742,COG5657@1,KOG1993@2759
COG Functional cat.UY
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.6129577-CDS-M-pyrifera_M_contig98762:247..6671622816904.6129577-CDS-M-pyrifera_M_contig98762:247..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98762 248..667 +
1692278246.9892347-CDS-M-pyrifera_M_contig98762:247..6671692278246.9892347-CDS-M-pyrifera_M_contig98762:247..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98762 248..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98762.22728.1prot_M-pyrifera_M_contig98762.22728.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98762 248..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98762.22728.1

>prot_M-pyrifera_M_contig98762.22728.1 ID=prot_M-pyrifera_M_contig98762.22728.1|Name=mRNA_M-pyrifera_M_contig98762.22728.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
QIAPYVENILRCLSSLWEGAQAHGIMKSSVIQSLAKLVSVLGAAVSGLLS
LLVPVIRSSTDLQQPHAAYMLEDGLLVWRYTVLQAAAADPALLALFPALL
PVIQASTEHLECCLRILEAYVLLGKAEFLQVGSLTPSPSL
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mRNA from alignment at M-pyrifera_M_contig98762:248..667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98762.22728.1 ID=mRNA_M-pyrifera_M_contig98762.22728.1|Name=mRNA_M-pyrifera_M_contig98762.22728.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig98762:248..667+ (Macrocystis pyrifera P11B4 male)
CAGATCGCGCCCTACGTGGAGAACATTCTGCGTTGCCTCTCGTCGCTGTG GGAGGGAGCGCAGGCGCACGGGATCATGAAGTCCTCGGTGATCCAGAGCC TGGCCAAGCTCGTCAGCGTGCTGGGCGCAGCCGTGTCGGGCCTCCTCTCC CTCCTTGTGCCCGTGATCCGCAGCAGCACCGACCTGCAGCAGCCGCACGC CGCGTACATGCTGGAGGACGGCCTTCTTGTGTGGCGCTACACTGTCTTGC AGGCAGCAGCCGCAGACCCCGCCCTGCTCGCACTCTTTCCCGCCCTTTTG CCGGTCATCCAGGCCTCTACCGAGCACCTCGAGTGCTGTCTCCGCATTCT CGAGGCCTACGTCCTCCTCGGCAAGGCCGAGTTTCTGCAGGTAGGCTCCC TCACTCCCTCTCCCTCTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98762:248..667+

>mRNA_M-pyrifera_M_contig98762.22728.1 ID=mRNA_M-pyrifera_M_contig98762.22728.1|Name=mRNA_M-pyrifera_M_contig98762.22728.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig98762:248..667+ (Macrocystis pyrifera P11B4 male)
CAGATCGCGCCCTACGTGGAGAACATTCTGCGTTGCCTCTCGTCGCTGTG
GGAGGGAGCGCAGGCGCACGGGATCATGAAGTCCTCGGTGATCCAGAGCC
TGGCCAAGCTCGTCAGCGTGCTGGGCGCAGCCGTGTCGGGCCTCCTCTCC
CTCCTTGTGCCCGTGATCCGCAGCAGCACCGACCTGCAGCAGCCGCACGC
CGCGTACATGCTGGAGGACGGCCTTCTTGTGTGGCGCTACACTGTCTTGC
AGGCAGCAGCCGCAGACCCCGCCCTGCTCGCACTCTTTCCCGCCCTTTTG
CCGGTCATCCAGGCCTCTACCGAGCACCTCGAGTGCTGTCTCCGCATTCT
CGAGGCCTACGTCCTCCTCGGCAAGGCCGAGTTTCTGCAGGTAGGCTCCC
TCACTCCCTCTCCCTCTCTCCAGATCGCGCCCTACGTGGAGAACATTCTG
CGTTGCCTCTCGTCGCTGTGGGAGGGAGCGCAGGCGCACGGGATCATGAA
GTCCTCGGTGATCCAGAGCCTGGCCAAGCTCGTCAGCGTGCTGGGCGCAG
CCGTGTCGGGCCTCCTCTCCCTCCTTGTGCCCGTGATCCGCAGCAGCACC
GACCTGCAGCAGCCGCACGCCGCGTACATGCTGGAGGACGGCCTTCTTGT
GTGGCGCTACACTGTCTTGCAGGCAGCAGCCGCAGACCCCGCCCTGCTCG
CACTCTTTCCCGCCCTTTTGCCGGTCATCCAGGCCTCTACCGAGCACCTC
GAGTGCTGTCTCCGCATTCTCGAGGCCTACGTCCTCCTCGGCAAGGCCGA
GTTTCTGCAGGTAGGCTCCCTCACTCCCTCTCCCTCTCTC
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