mRNA_M-pyrifera_M_contig98748.22724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98748.22724.1
Unique NamemRNA_M-pyrifera_M_contig98748.22724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A2D6KY42_9ACTN (LLM class F420-dependent oxidoreductase n=5 Tax=Actinobacteria TaxID=201174 RepID=A0A2D6KY42_9ACTN)

HSP 1 Score: 260 bits (665), Expect = 5.660e-84
Identity = 135/227 (59.47%), Postives = 163/227 (71.81%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARGKLEIE-AETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            + L   +  AA+ GF ++W+PQI G  +A+  I   A+  P IR GTSV+PTYPRHPMV+A+QA TT  +   R  LGIGLSHQPVVEGMWG+ FDKPVRH  +YL  L PL+    VSY GE+I  RG++    A+ PPVLVAALGPQML+L G  ADGTITWMTG  T+ +LT P I+EAAE AGRPAPQV  GLP+ VT D DAAR +A + + IYGQLPSYRA
Sbjct:   13 DALENSLREAAEQGFPSFWMPQIFGM-DALTAIAVAAKNVPNIRVGTSVIPTYPRHPMVLAQQALTTQSVIGGRLELGIGLSHQPVVEGMWGISFDKPVRHMSDYLSILTPLLNDRRVSYKGESIIGRGEITPPPADAPPVLVAALGPQMLRLAGRLADGTITWMTGPETIRTLTAPTISEAAEEAGRPAPQVAMGLPVCVTSDVDAARERADRDYAIYGQLPSYRA 238          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A6N7FI03_9ACTN (TIGR03564 family F420-dependent LLM class oxidoreductase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FI03_9ACTN)

HSP 1 Score: 255 bits (652), Expect = 5.440e-82
Identity = 132/227 (58.15%), Postives = 168/227 (74.01%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARGKLEI-EAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            EG+   + +AA  GF +YW+PQ  G  + + +IGAV  R PG+R  T+VVPTYPRHPMV+A+QA TT++L   R +LG+G SH+PVVEG WG+ FD+P+RH  EYL AL   + G+   Y GETITA+G L + +A TP VLV+ALGPQ+LKLTG+ ADGTITWMTG  TL  LTVP I  AA+AAGRPAP+VVAG+P+ VTDD  A   +A ++F +YG LPSYRA
Sbjct:   13 EGITKSLESAASDGFASYWIPQAFGM-DTLTVIGAVGPRVPGLRLATAVVPTYPRHPMVLAQQALTTNLLVGGRLALGVGPSHKPVVEGSWGISFDRPIRHLHEYLVALQESL-GQKPRYQGETITAKGDLSVPDAPTPKVLVSALGPQLLKLTGSVADGTITWMTGPNTLRDLTVPTITAAADAAGRPAPEVVAGVPVCVTDDPAATLERANRSFSMYGTLPSYRA 237          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A3D0TKR2_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D0TKR2_9ACTN)

HSP 1 Score: 254 bits (650), Expect = 1.130e-81
Identity = 132/227 (58.15%), Postives = 160/227 (70.48%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARGKLEIE-AETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            + L A +  AA+ GF  YW PQ+ G  + +      A+  P IR GT+VVPTYPRHPM++A+QA T       R  LGIGL H+PVVEG WG+PF++PV H R+YL  L+PL+     S+SGE +T RG++    A  PPVLVAALGPQML+LTG  ADGTITWMTG  TLA LTVP I +AAEAAGRPAPQVVA  P+ VTDD DAARA AA+ + +YG LPSYRA
Sbjct:   13 DKLTAGLRTAAEQGFARYWRPQVFGM-DTLTAFAVAARAVPDIRVGTAVVPTYPRHPMMLAQQALTVQSAIGDRLDLGIGLCHKPVVEGCWGIPFERPVAHLRDYLSVLVPLLVDRKASHSGEMVTGRGEITPPPAAAPPVLVAALGPQMLRLTGRMADGTITWMTGPKTLAELTVPTINDAAEAAGRPAPQVVAAFPVCVTDDPDAARALAARDYAVYGTLPSYRA 238          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A349B1D5_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B1D5_9ACTN)

HSP 1 Score: 253 bits (645), Expect = 6.880e-81
Identity = 133/227 (58.59%), Postives = 161/227 (70.93%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARGKLEIEAETP-PVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            + +VADV AA + GFH+YW+PQI G  +A+ L+  V +    I  GTSV+PTYPRHP ++A QA TT    D R +LGIGLSHQPV+E M+G+ FDKPVRH REYL+ LMPLV+GE V   GETI+A   L+I    P PV VAALGPQMLKL G R  GTITWMTG  T+A  T P I  AAE AG P P V +G+P+ VTDD +  RA+AA+ + IYGQLPSYRA
Sbjct:   16 DDVVADVQAAEEQGFHSYWVPQIFGY-DALTLLAVVGRETERIELGTSVIPTYPRHPAMLAAQALTTQQACDGRLTLGIGLSHQPVIEHMFGMSFDKPVRHLREYLDVLMPLVSGERVEAHGETISANLALDIPGTRPVPVQVAALGPQMLKLAGARTAGTITWMTGPRTIADHTAPTIRAAAEDAGNPDPLVTSGVPVCVTDDVEGTRARAAQVYAIYGQLPSYRA 241          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: UPI001F354D5C (LLM class F420-dependent oxidoreductase n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F354D5C)

HSP 1 Score: 248 bits (633), Expect = 2.320e-79
Identity = 129/224 (57.59%), Postives = 159/224 (70.98%), Query Frame = 1
Query:    7 LVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARGKLEIEAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            +V  V +A D GF + W PQ+ G  +A+  +  VA + PGI  GT+VVPTYPRHPMVMA QART   ++  RF+LGIGLSHQ V++ M G+P+DKPVRH RE+L  LMPL  G+AVS+ G+T+TA+  L +E +  PVLVAALG QML +TG  ADGT+TWMTG  T+AS   P I  AA   GRP P++V  LP+ VTDD D AR QAA  F IYGQLPSYRA
Sbjct:    1 MVRQVRSAHDHGFASAWAPQVFGP-DALTALAVVASQVPGIALGTAVVPTYPRHPMVMAAQARTVQQVSGGRFTLGIGLSHQVVIQEMLGIPWDKPVRHLREHLSILMPLARGDAVSFEGDTLTAKLALSVECDPVPVLVAALGSQMLTVTGRMADGTVTWMTGPRTIASHVAPTIRRAANDHGRPDPRIVVALPVAVTDDPDRARGQAAGVFQIYGQLPSYRA 223          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A538LT47_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538LT47_9ACTN)

HSP 1 Score: 248 bits (632), Expect = 6.390e-79
Identity = 132/228 (57.89%), Postives = 163/228 (71.49%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITAR--GKLEIEAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            +G+V  V+  A+ G  T W  QI G  +A+ L+  V +  P I  GT+VVPTYPRHP+++A QA TT   T  R  LGIGLSHQ V+EGM+G  FD+P RH REYL ALMPL+ GEAV++ GET++A     L+++ + PPVLVAALGP ML+L G  ADGT+TWMTG ATLAS  VP IA+AA  AGRPAP+V  GLP+ VT D D AR  A++TF IYGQLPSYRA
Sbjct:   14 DGVVDQVSKLAEQGIATAWCSQIFGY-DALTLLAVVGREVPDIELGTAVVPTYPRHPVMLAAQALTTQAATGRRLVLGIGLSHQVVIEGMFGYSFDRPARHMREYLSALMPLLHGEAVTFKGETLSATTMAPLDVKVDAPPVLVAALGPTMLRLAGELADGTVTWMTGPATLASHIVPSIAKAATDAGRPAPRVAVGLPVAVTTDPDRAREAASRTFAIYGQLPSYRA 240          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A6I2YZK8_9ACTN (TIGR03564 family F420-dependent LLM class oxidoreductase n=4 Tax=root TaxID=1 RepID=A0A6I2YZK8_9ACTN)

HSP 1 Score: 245 bits (625), Expect = 7.330e-78
Identity = 130/227 (57.27%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITAR-GKLEIEAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            E ++ +   AA  GFHT+W  QI G  +A+ ++  V +  PGI  GT+VVPTYPRHPM++A+QA T    T  R +LGIGLSHQ VVE MWG+ FDKPVRH REYL  LMP++ G+ V++ GET     G   I    P VLVAALG QML+L G   DGT TW  G  TL S TVP + EAAEAAGRPAP+V A  P+ VTDDADAARA+AA+ F IY QLPSYRA
Sbjct:   16 EDVIEEARIAAQDGFHTFWSSQIFG-FDALTVLALVGREVPGIELGTAVVPTYPRHPMMLAQQALTVQAATGGRLALGIGLSHQIVVESMWGISFDKPVRHMREYLNVLMPMLDGKPVAFDGETYKVHAGASVIGGTRPSVLVAALGAQMLRLCGALTDGTSTWCVGPETLRSFTVPTLREAAEAAGRPAPRVEASFPVCVTDDADAARARAAQLFAIYAQLPSYRA 241          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A4R7I2B7_9ACTN (F420-dependent oxidoreductase-like protein n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I2B7_9ACTN)

HSP 1 Score: 245 bits (625), Expect = 7.330e-78
Identity = 129/231 (55.84%), Postives = 165/231 (71.43%), Query Frame = 1
Query:    1 EGLVADVTAAAD----GGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARGKLEI-EAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            +G VA V A A      GF ++W+PQI G  +A+  +G VA   P I  GTSVVPT+PRHPM++A+QA T + + D R +LGIGLSHQPVVEGMWG+PFDKPVRH REYLEA+MPL+   +  ++GE  T+RG L I + + P V++AALG QMLK+    ADGT+TW TG  TL S TVP +  A+EAAGR + +V+A LP+ VTDD  +A+ +AA  F IYGQLPSYRA
Sbjct:   12 DGTVAQVLAGAKQAEADGFDSFWVPQIFGH-DALTALGVVAHEVPRIEIGTSVVPTFPRHPMMLAQQALTVNSIADGRLTLGIGLSHQPVVEGMWGMPFDKPVRHMREYLEAMMPLLETGSGRFAGEVFTSRGDLSIVDRQRPGVVIAALGEQMLKVAANLADGTLTWCTGPNTLGSHTVPTLRAASEAAGRDSTRVIAALPVCVTDDVASAQERAAGVFAIYGQLPSYRA 241          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A538FP74_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538FP74_9ACTN)

HSP 1 Score: 244 bits (622), Expect = 2.080e-77
Identity = 128/228 (56.14%), Postives = 164/228 (71.93%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETI--TARGKLEIEAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            + ++ +   AA GG  + W PQI G  +A+ L+  V +   GI  GT+VVPTYPRHP+V+A QA TT   +  R +LGIGLSH+ V+E M+G  FDKP RH REYL  L+PL+ G+AVS+ GET+  T  G L+++A+ PPVL+AAL P ML+L G+ ADGT+TWMTG +T+    VP IA AA+ AGRP P+VVAGLP+ VT DADAAR +AA TF IYGQLPSYRA
Sbjct:   14 DEVIKETRWAAQGGLSSVWSPQIFGY-DALTLLAVVGREVDGIELGTAVVPTYPRHPIVLAGQALTTQAASGGRLALGIGLSHRIVIESMFGHSFDKPARHMREYLSVLLPLLQGQAVSFQGETLKATTMGPLDVKAKPPPVLLAALAPVMLRLAGSVADGTVTWMTGPSTIGEHIVPSIARAAKEAGRPEPRVVAGLPVCVTADADAARERAATTFAIYGQLPSYRA 240          
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Match: A0A1Z9JRC4_9ACTN (Bac_luciferase domain-containing protein n=11 Tax=root TaxID=1 RepID=A0A1Z9JRC4_9ACTN)

HSP 1 Score: 242 bits (617), Expect = 1.270e-76
Identity = 128/227 (56.39%), Postives = 158/227 (69.60%), Query Frame = 1
Query:    1 EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVVPTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVRHAREYLEALMPLVAGEAVSYSGETITARG-KLEIEAETPPVLVAALGPQMLKLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWVTDDADAARAQAAKTFVIYGQLPSYRA 678
            E  ++D  AA + GF +YWLPQ+    +A+  +  +    P I  GT+V+PTYPRHPMVMA+QA + + +   R +LGIGLSH+PV+E  +G  FDKPVRH REYLE L P +  E V Y GET+TAR   L + +  P VLVAALGPQML+LTG  ADGTITWMTG  TLA LTVP I EAAE A RP P+V+AGLP+  TDD DA   +AAK + +YG LPSYRA
Sbjct:   17 EEAISDARAAQEAGFPSYWLPQMPMGVDALTSLSHIGASVPEIELGTAVIPTYPRHPMVMAQQALSVTSVIGDRLALGIGLSHKPVIEKQYGYEFDKPVRHLREYLEVLNPQLRDEPVRYEGETLTARNPSLGLGSPVPQVLVAALGPQMLRLTGRLADGTITWMTGNKTLADLTVPEICEAAEEAQRPKPRVLAGLPVLCTDDIDAGMERAAKVWQMYGTLPSYRA 243          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98748.22724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6KY42_9ACTN5.660e-8459.47LLM class F420-dependent oxidoreductase n=5 Tax=Ac... [more]
A0A6N7FI03_9ACTN5.440e-8258.15TIGR03564 family F420-dependent LLM class oxidored... [more]
A0A3D0TKR2_9ACTN1.130e-8158.15LLM class F420-dependent oxidoreductase n=1 Tax=Ac... [more]
A0A349B1D5_9ACTN6.880e-8158.59LLM class F420-dependent oxidoreductase n=1 Tax=Ac... [more]
UPI001F354D5C2.320e-7957.59LLM class F420-dependent oxidoreductase n=1 Tax=Rh... [more]
A0A538LT47_9ACTN6.390e-7957.89LLM class F420-dependent oxidoreductase n=1 Tax=Ac... [more]
A0A6I2YZK8_9ACTN7.330e-7857.27TIGR03564 family F420-dependent LLM class oxidored... [more]
A0A4R7I2B7_9ACTN7.330e-7855.84F420-dependent oxidoreductase-like protein n=1 Tax... [more]
A0A538FP74_9ACTN2.080e-7756.14LLM class F420-dependent oxidoreductase n=1 Tax=Ac... [more]
A0A1Z9JRC4_9ACTN1.270e-7656.39Bac_luciferase domain-containing protein n=11 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98748contigM-pyrifera_M_contig98748:2..679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score244.2
Seed ortholog evalue5.8e-62
Seed eggNOG ortholog1229780.BN381_80044
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
EggNOG OGs2GMRE@201174,COG2141@1,COG2141@2
COG Functional cat.C
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size678
Cds size678
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.457859-CDS-M-pyrifera_M_contig98748:1..6791622816904.457859-CDS-M-pyrifera_M_contig98748:1..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98748 2..679 -
1692278246.9287724-CDS-M-pyrifera_M_contig98748:1..6791692278246.9287724-CDS-M-pyrifera_M_contig98748:1..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98748 2..679 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98748.22724.1prot_M-pyrifera_M_contig98748.22724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98748 2..679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98748.22724.1

>prot_M-pyrifera_M_contig98748.22724.1 ID=prot_M-pyrifera_M_contig98748.22724.1|Name=mRNA_M-pyrifera_M_contig98748.22724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=226bp
EGLVADVTAAADGGFHTYWLPQIVGQAEAMNLIGAVAQRAPGIRFGTSVV
PTYPRHPMVMAEQARTTSMLTDARFSLGIGLSHQPVVEGMWGLPFDKPVR
HAREYLEALMPLVAGEAVSYSGETITARGKLEIEAETPPVLVAALGPQML
KLTGTRADGTITWMTGAATLASLTVPVIAEAAEAAGRPAPQVVAGLPIWV
TDDADAARAQAAKTFVIYGQLPSYRA
back to top

mRNA from alignment at M-pyrifera_M_contig98748:2..679-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98748.22724.1 ID=mRNA_M-pyrifera_M_contig98748.22724.1|Name=mRNA_M-pyrifera_M_contig98748.22724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig98748:2..679- (Macrocystis pyrifera P11B4 male)
GAAGGTCTGGTGGCTGACGTCACCGCCGCCGCCGACGGTGGGTTTCACAC CTACTGGCTGCCCCAGATCGTCGGTCAGGCCGAGGCGATGAACCTGATCG GTGCCGTGGCTCAACGAGCCCCCGGTATCCGCTTCGGAACCTCGGTCGTC CCGACCTATCCGCGTCACCCGATGGTGATGGCCGAGCAGGCGCGTACGAC CAGCATGCTCACCGACGCGCGCTTCTCGCTCGGCATCGGTCTCTCACACC AGCCCGTCGTCGAGGGGATGTGGGGCCTGCCGTTCGACAAGCCCGTCCGT CACGCTCGCGAATACCTCGAGGCACTGATGCCGCTCGTGGCCGGCGAGGC CGTGAGCTACAGCGGTGAGACCATCACCGCTCGGGGCAAGCTCGAAATCG AAGCCGAGACACCTCCGGTGCTCGTGGCCGCCCTCGGCCCACAGATGCTG AAGCTGACCGGCACCCGGGCCGACGGCACCATCACCTGGATGACCGGAGC AGCAACGCTCGCCTCGCTCACCGTTCCGGTCATCGCCGAGGCTGCCGAGG CCGCAGGTCGCCCTGCGCCGCAGGTCGTCGCCGGACTCCCGATCTGGGTG ACCGACGATGCCGACGCAGCGCGGGCCCAGGCAGCCAAGACCTTCGTGAT CTACGGTCAGCTGCCGTCCTATCGGGCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig98748:2..679-

>mRNA_M-pyrifera_M_contig98748.22724.1 ID=mRNA_M-pyrifera_M_contig98748.22724.1|Name=mRNA_M-pyrifera_M_contig98748.22724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1356bp|location=Sequence derived from alignment at M-pyrifera_M_contig98748:2..679- (Macrocystis pyrifera P11B4 male)
GAAGGTCTGGTGGCTGACGTCACCGCCGCCGCCGACGGTGGGTTTCACAC
CTACTGGCTGCCCCAGATCGTCGGTCAGGCCGAGGCGATGAACCTGATCG
GTGCCGTGGCTCAACGAGCCCCCGGTATCCGCTTCGGAACCTCGGTCGTC
CCGACCTATCCGCGTCACCCGATGGTGATGGCCGAGCAGGCGCGTACGAC
CAGCATGCTCACCGACGCGCGCTTCTCGCTCGGCATCGGTCTCTCACACC
AGCCCGTCGTCGAGGGGATGTGGGGCCTGCCGTTCGACAAGCCCGTCCGT
CACGCTCGCGAATACCTCGAGGCACTGATGCCGCTCGTGGCCGGCGAGGC
CGTGAGCTACAGCGGTGAGACCATCACCGCTCGGGGCAAGCTCGAAATCG
AAGCCGAGACACCTCCGGTGCTCGTGGCCGCCCTCGGCCCACAGATGCTG
AAGCTGACCGGCACCCGGGCCGACGGCACCATCACCTGGATGACCGGAGC
AGCAACGCTCGCCTCGCTCACCGTTCCGGTCATCGCCGAGGCTGCCGAGG
CCGCAGGTCGCCCTGCGCCGCAGGTCGTCGCCGGACTCCCGATCTGGGTG
ACCGACGATGCCGACGCAGCGCGGGCCCAGGCAGCCAAGACCTTCGTGAT
CTACGGTCAGCTGCCGTCCTATCGGGCGGAAGGTCTGGTGGCTGACGTCA
CCGCCGCCGCCGACGGTGGGTTTCACACCTACTGGCTGCCCCAGATCGTC
GGTCAGGCCGAGGCGATGAACCTGATCGGTGCCGTGGCTCAACGAGCCCC
CGGTATCCGCTTCGGAACCTCGGTCGTCCCGACCTATCCGCGTCACCCGA
TGGTGATGGCCGAGCAGGCGCGTACGACCAGCATGCTCACCGACGCGCGC
TTCTCGCTCGGCATCGGTCTCTCACACCAGCCCGTCGTCGAGGGGATGTG
GGGCCTGCCGTTCGACAAGCCCGTCCGTCACGCTCGCGAATACCTCGAGG
CACTGATGCCGCTCGTGGCCGGCGAGGCCGTGAGCTACAGCGGTGAGACC
ATCACCGCTCGGGGCAAGCTCGAAATCGAAGCCGAGACACCTCCGGTGCT
CGTGGCCGCCCTCGGCCCACAGATGCTGAAGCTGACCGGCACCCGGGCCG
ACGGCACCATCACCTGGATGACCGGAGCAGCAACGCTCGCCTCGCTCACC
GTTCCGGTCATCGCCGAGGCTGCCGAGGCCGCAGGTCGCCCTGCGCCGCA
GGTCGTCGCCGGACTCCCGATCTGGGTGACCGACGATGCCGACGCAGCGC
GGGCCCAGGCAGCCAAGACCTTCGTGATCTACGGTCAGCTGCCGTCCTAT
CGGGCG
back to top