mRNA_M-pyrifera_M_contig98704.22721.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98704.22721.1
Unique NamemRNA_M-pyrifera_M_contig98704.22721.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: A0A6G0WTG5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTG5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.580e-35
Identity = 77/169 (45.56%), Postives = 109/169 (64.50%), Query Frame = 1
Query:   37 SASQHHSSSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            S S  H +S++ +L   L+  FLP GYP SV+ +Y  FQ++DT QA  SY+RG L T ++LE++GVGK   +  AAA++WVMRDG+GML  L F ++   +  A  K++RL ADV+ND  L L++L P     + E       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   54 SKSMWHITSVVQTLRRELSDMFLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKESVTPLAAAIQWVMRDGSGMLGGLFFAYMVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLWVTE-------ILCVSSVCKAMCGVAAGATRSSLTAH 215          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: A0A7R9UTE8_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UTE8_DIALT)

HSP 1 Score: 130 bits (326), Expect = 6.100e-34
Identity = 74/163 (45.40%), Postives = 104/163 (63.80%), Query Frame = 1
Query:   55 SSSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            S+S    L ++ A  FLP G+PHSV  +YA +Q+YDT+QA  SY+RG L T AILEA GVG   AS  AAA+ WV+RDG GML SL+F F    R     K +RL AD++NDV L L+++ P L        + +L++    ++ +++ G AAGA R+++TAH
Sbjct:   41 SASARERLWSLFARVFLPDGFPHSVRPEYATYQLYDTLQALCSYLRGILTTTAILEASGVGNETASPLAAAVAWVLRDGFGMLGSLIFAFCVGSRFDGGVKEWRLFADLINDVGLSLDMVAPLL-------PHRVLLLTSCGAMCKTMCGVAAGATRASITAH 196          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: A0A024TJI4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJI4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 9.200e-34
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   58 SSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            ++I+  L   L   FLP GYP SV+ +Y  FQ++DT QA  SY+RG L T ++LE++GVGK   +  AAAL+WVMRDG+GML  L F ++   +  A  K++RL ADV+ND  L L++L P     + E       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   66 TNIVQLLRRELFDMFLPFGYPDSVSDEYLTFQMWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYIVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLYVTE-------ILCVSSVCKAMCGVAAGATRSSLTAH 220          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: W4FX85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FX85_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.330e-33
Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   58 SSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            ++++  L   L   FLP GYP SV+ +Y  FQ++DT QA  SY+RG L T ++LE++GVGK   +  AAAL+WVMRDG+GML  L F ++   +  A  K++RL ADV+ND  L L++L P     + E       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   61 ANVVQLLRRELFDMFLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYVVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLYVTE-------ILCISSVCKAMCGVAAGATRSSLTAH 215          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: A0A067CAR1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAR1_SAPPC)

HSP 1 Score: 132 bits (331), Expect = 3.040e-33
Identity = 77/173 (44.51%), Postives = 108/173 (62.43%), Query Frame = 1
Query:   25 TTSFSASQHHSSSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            T S S  +   + ++ ++ + L   FLP GYP SVT DY  FQ++DT QA  SY+RG L T ++LE++GVG    +  AAAL+WVMRDG+GML  L F +    +  A  K++RL ADV+NDV L L++L P     + +       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   52 TPSASPPRSRPTWLVQAIRSELFDMFLPAGYPSSVTEDYLPFQLWDTCQAMCSYLRGVLATQSVLESVGVGNEAITPLAAALQWVMRDGSGMLGGLFFAYGVGPKFDANVKFWRLYADVINDVGLTLDMLAPFAPRYVTQ-------ILCVSSVCKAMCGVAAGATRSSLTAH 217          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: A0A024THM9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THM9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.230e-33
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   58 SSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            ++I+  L   L   FLP GYP SV+ +Y  FQ++DT QA  SY+RG L T ++LE++GVGK   +  AAAL+WVMRDG+GML  L F ++   +  A  K++RL ADV+ND  L L++L P     + E       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   66 TNIVQLLRRELFDMFLPFGYPDSVSDEYLTFQMWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYIVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLYVTE-------ILCVSSVCKAMCGVAAGATRSSLTAH 220          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: E9HC21_DAPPU (Uncharacterized protein (Fragment) n=2 Tax=Daphnia pulex TaxID=6669 RepID=E9HC21_DAPPU)

HSP 1 Score: 126 bits (317), Expect = 1.160e-32
Identity = 69/152 (45.39%), Postives = 102/152 (67.11%), Query Frame = 1
Query:   88 LATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            L++ FLP GYP SV+ DY E+Q++DTIQA +S + G+L T AILE +GVG + ++  AA L W+++DG GM+  ++F +    ++ A  K +R  AD++ND AL LEL  P  ++ +G +  ++  ILC A V +SIVG A GA R+ALT H
Sbjct:    1 LSSVFLPQGYPSSVSDDYLEYQIWDTIQAFASSLSGSLSTRAILEGVGVGSSTSTPLAATLMWLIKDGTGMVGRILFAWCNGTKLDADSKKWRFFADLLNDCALSLELCAPYAVAAVGGSNGTMTSILCVAGVAKSIVGVAGGATRAALTQH 152          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: W4FV94_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FV94_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.290e-32
Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = 1
Query:   58 SSIIASLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            ++++  L   L   FLP GYP SV+ +Y  FQ++DT QA  SY+RG L T ++LE++GVGK   +  AAAL+WVMRDG+GML  L F ++   +  A  K++RL ADV+ND  L L++L P     + E       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   61 ANVVQLLRRELFDMFLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYVVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLYVTE-------ILCISSVCKAMCGVAAGATRSSLTAH 215          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: A0A485KJ17_9STRA (Aste57867_7958 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJ17_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.210e-32
Identity = 72/148 (48.65%), Postives = 98/148 (66.22%), Query Frame = 1
Query:  100 FLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            FLP GYP SV+ +Y  FQ++DT QA  SY+RG L T ++LE++GVGK   +  AAA++WVMRDG+GML  L F +L   +  A  K++RL ADV+ND  L L++L P     + E       ILC +SV +++ G AAGA RS+LTAH
Sbjct:   76 FLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKDTVTPLAAAIQWVMRDGSGMLGGLFFAYLVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLYVTE-------ILCISSVCKAMCGVAAGATRSSLTAH 216          
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Match: UPI001D6945F7 (vitamin B6 photo-protection and homoeostasis-domain-containing protein n=1 Tax=Truncatella angustata TaxID=152316 RepID=UPI001D6945F7)

HSP 1 Score: 127 bits (319), Expect = 7.240e-32
Identity = 69/157 (43.95%), Postives = 101/157 (64.33%), Query Frame = 1
Query:   73 SLLTMLATTFLPVGYPHSVTADYAEFQVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGMLTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQYSLLIILCTASVLRSIVGAAAGAARSALTAH 543
            S +  L   FLP GYPH+VT+DY  +Q+YD++QA SS + G L   A+L+  GVGK G+S+T A L  V+++  G L ++VF   F   +    KY+R +AD+ ND AL L++LTP+L  T        ++ LC A +LRS+ G AAGAA+++L+AH
Sbjct:   44 SYVKQLLDVFLPAGYPHTVTSDYTSYQIYDSLQAFSSSIAGLLSNRAVLQGFGVGKEGSSATGAVLLSVLQESTGRLATIVFADRFGQAIEPECKYYRYMADIFNDAALLLDILTPSLPQTPK------ILSLCAAGILRSLCGVAAGAAKASLSAH 194          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98704.22721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WTG5_9STRA2.580e-3545.56Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7R9UTE8_DIALT6.100e-3445.40Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A024TJI4_9STRA9.200e-3446.30Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FX85_9STRA1.330e-3345.68Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A067CAR1_SAPPC3.040e-3344.51Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024THM9_9STRA7.230e-3346.30Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
E9HC21_DAPPU1.160e-3245.39Uncharacterized protein (Fragment) n=2 Tax=Daphnia... [more]
W4FV94_9STRA1.290e-3245.68Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A485KJ17_9STRA4.210e-3248.65Aste57867_7958 protein n=1 Tax=Aphanomyces stellat... [more]
UPI001D6945F77.240e-3243.95vitamin B6 photo-protection and homoeostasis-domai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98704contigM-pyrifera_M_contig98704:3..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue6.2e-30
Seed eggNOG ortholog112098.XP_008619061.1
Preferred nameC16orf58
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size543
Cds size543
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.3347297-CDS-M-pyrifera_M_contig98704:2..5451622816904.3347297-CDS-M-pyrifera_M_contig98704:2..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98704 3..545 -
1692278246.8619268-CDS-M-pyrifera_M_contig98704:2..5451692278246.8619268-CDS-M-pyrifera_M_contig98704:2..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98704 3..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98704.22721.1prot_M-pyrifera_M_contig98704.22721.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98704 3..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98704.22721.1

>prot_M-pyrifera_M_contig98704.22721.1 ID=prot_M-pyrifera_M_contig98704.22721.1|Name=mRNA_M-pyrifera_M_contig98704.22721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
MLRGQNVFTTSFSASQHHSSSIIASLLTMLATTFLPVGYPHSVTADYAEF
QVYDTIQAASSYVRGALCTAAILEAMGVGKAGASSTAAALEWVMRDGAGM
LTSLVFGFLFAHRVGAAPKYFRLVADVVNDVALCLELLTPTLMSTMGENQ
YSLLIILCTASVLRSIVGAAAGAARSALTAH
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mRNA from alignment at M-pyrifera_M_contig98704:3..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98704.22721.1 ID=mRNA_M-pyrifera_M_contig98704.22721.1|Name=mRNA_M-pyrifera_M_contig98704.22721.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig98704:3..545- (Macrocystis pyrifera P11B4 male)
ATGCTACGGGGCCAAAATGTGTTTACCACGTCGTTTTCTGCCTCCCAACA TCATTCTTCGTCAATCATAGCATCTCTACTCACTATGCTTGCTACAACCT TTTTACCAGTTGGCTATCCACACTCGGTAACAGCCGATTATGCTGAATTC CAAGTCTATGATACAATTCAAGCCGCTTCCTCGTATGTTCGAGGTGCATT GTGCACTGCAGCGATATTAGAAGCAATGGGTGTTGGGAAAGCTGGAGCGT CATCAACTGCAGCAGCACTGGAATGGGTCATGCGAGATGGTGCGGGTATG TTGACTTCGTTAGTGTTTGGTTTCTTGTTTGCACACCGTGTTGGTGCGGC TCCCAAGTATTTTCGATTAGTAGCAGACGTTGTGAATGACGTTGCACTTT GTCTGGAACTTCTTACTCCCACATTGATGTCTACAATGGGAGAAAATCAG TACTCTTTGTTAATCATCTTGTGTACAGCAAGCGTGTTACGATCCATCGT TGGAGCCGCTGCAGGCGCTGCACGTTCTGCTCTCACCGCTCAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98704:3..545-

>mRNA_M-pyrifera_M_contig98704.22721.1 ID=mRNA_M-pyrifera_M_contig98704.22721.1|Name=mRNA_M-pyrifera_M_contig98704.22721.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig98704:3..545- (Macrocystis pyrifera P11B4 male)
ATGCTACGGGGCCAAAATGTGTTTACCACGTCGTTTTCTGCCTCCCAACA
TCATTCTTCGTCAATCATAGCATCTCTACTCACTATGCTTGCTACAACCT
TTTTACCAGTTGGCTATCCACACTCGGTAACAGCCGATTATGCTGAATTC
CAAGTCTATGATACAATTCAAGCCGCTTCCTCGTATGTTCGAGGTGCATT
GTGCACTGCAGCGATATTAGAAGCAATGGGTGTTGGGAAAGCTGGAGCGT
CATCAACTGCAGCAGCACTGGAATGGGTCATGCGAGATGGTGCGGGTATG
TTGACTTCGTTAGTGTTTGGTTTCTTGTTTGCACACCGTGTTGGTGCGGC
TCCCAAGTATTTTCGATTAGTAGCAGACGTTGTGAATGACGTTGCACTTT
GTCTGGAACTTCTTACTCCCACATTGATGTCTACAATGGGAGAAAATCAG
TACTCTTTGTTAATCATCTTGTGTACAGCAAGCGTGTTACGATCCATCGT
TGGAGCCGCTGCAGGCGCTGCACGTTCTGCTCTCACCGCTCATATGCTAC
GGGGCCAAAATGTGTTTACCACGTCGTTTTCTGCCTCCCAACATCATTCT
TCGTCAATCATAGCATCTCTACTCACTATGCTTGCTACAACCTTTTTACC
AGTTGGCTATCCACACTCGGTAACAGCCGATTATGCTGAATTCCAAGTCT
ATGATACAATTCAAGCCGCTTCCTCGTATGTTCGAGGTGCATTGTGCACT
GCAGCGATATTAGAAGCAATGGGTGTTGGGAAAGCTGGAGCGTCATCAAC
TGCAGCAGCACTGGAATGGGTCATGCGAGATGGTGCGGGTATGTTGACTT
CGTTAGTGTTTGGTTTCTTGTTTGCACACCGTGTTGGTGCGGCTCCCAAG
TATTTTCGATTAGTAGCAGACGTTGTGAATGACGTTGCACTTTGTCTGGA
ACTTCTTACTCCCACATTGATGTCTACAATGGGAGAAAATCAGTACTCTT
TGTTAATCATCTTGTGTACAGCAAGCGTGTTACGATCCATCGTTGGAGCC
GCTGCAGGCGCTGCACGTTCTGCTCTCACCGCTCAT
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