mRNA_M-pyrifera_M_contig98692.22717.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98692.22717.1
Unique NamemRNA_M-pyrifera_M_contig98692.22717.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98692.22717.1 vs. uniprot
Match: F0SG89_RUBBR (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=F0SG89_RUBBR)

HSP 1 Score: 60.1 bits (144), Expect = 9.390e-9
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   10 DVTPSDQE-IPLKERIVNWLRTAAAAGYGLSLLLHGLLLLLMALWFFPQIKEAMSITTVVQSDTEELQPFDAMDDIHLESPAG 255
            D  P ++E +PL ERI NWL +AAAAGYG+SLL+H ++L++M+L    ++     + T V    E  Q  D MD + ++ PAG
Sbjct:   41 DSQPEEEEQLPLTERIRNWLFSAAAAGYGMSLLVHAIILIIMSLVVIHELARQEQMNTTVTESGEVEQLEDVMD-VRIDLPAG 122
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BLAST of mRNA_M-pyrifera_M_contig98692.22717.1 vs. uniprot
Match: A0A356AB97_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A356AB97_9PLAN)

HSP 1 Score: 52.8 bits (125), Expect = 4.190e-6
Identity = 31/86 (36.05%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 PPPDVTPSDQEIP-LKERIVNWLRTAAAAGYGLSLLLHGLLLLLMALWFFPQIKEAMSITTVVQSDTEELQPFDAMDDIHLESPAG 255
            PP  V P D  +  + + +  W  +A AAGYG+SLL HGLLL+ M+L+FF    +   I + + ++ +E   FD + D+ ++ P G
Sbjct:   45 PPHAVEPFDFSLKGIFKAVKRWFHSAVAAGYGISLLFHGLLLIAMSLYFFSDYVQENYIESSIATN-DEAMVFDEVLDVRIDMPTG 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98692.22717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0SG89_RUBBR9.390e-942.17Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A356AB97_9PLAN4.190e-636.05Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98692contigM-pyrifera_M_contig98692:58..312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816904.0585835-CDS-M-pyrifera_M_contig98692:57..3121622816904.0585835-CDS-M-pyrifera_M_contig98692:57..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98692 58..312 -
1692278246.6768532-CDS-M-pyrifera_M_contig98692:57..3121692278246.6768532-CDS-M-pyrifera_M_contig98692:57..312Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98692 58..312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98692.22717.1prot_M-pyrifera_M_contig98692.22717.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98692 58..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98692.22717.1

>prot_M-pyrifera_M_contig98692.22717.1 ID=prot_M-pyrifera_M_contig98692.22717.1|Name=mRNA_M-pyrifera_M_contig98692.22717.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
PPPDVTPSDQEIPLKERIVNWLRTAAAAGYGLSLLLHGLLLLLMALWFFP
QIKEAMSITTVVQSDTEELQPFDAMDDIHLESPAG
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mRNA from alignment at M-pyrifera_M_contig98692:58..312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98692.22717.1 ID=mRNA_M-pyrifera_M_contig98692.22717.1|Name=mRNA_M-pyrifera_M_contig98692.22717.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig98692:58..312- (Macrocystis pyrifera P11B4 male)
CCTCCACCGGATGTGACCCCTTCTGATCAGGAGATCCCGCTCAAGGAACG
GATTGTTAACTGGTTGCGAACAGCCGCCGCTGCCGGCTACGGCCTGTCAC
TCCTCCTACACGGCTTGTTGCTGCTGTTGATGGCCTTGTGGTTCTTCCCA
CAGATCAAGGAAGCCATGAGTATCACGACGGTGGTCCAAAGTGACACTGA
AGAGCTGCAGCCTTTCGATGCGATGGATGATATCCACCTTGAGTCTCCCG
CAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98692:58..312-

>mRNA_M-pyrifera_M_contig98692.22717.1 ID=mRNA_M-pyrifera_M_contig98692.22717.1|Name=mRNA_M-pyrifera_M_contig98692.22717.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig98692:58..312- (Macrocystis pyrifera P11B4 male)
CCTCCACCGGATGTGACCCCTTCTGATCAGGAGATCCCGCTCAAGGAACG
GATTGTTAACTGGTTGCGAACAGCCGCCGCTGCCGGCTACGGCCTGTCAC
TCCTCCTACACGGCTTGTTGCTGCTGTTGATGGCCTTGTGGTTCTTCCCA
CAGATCAAGGAAGCCATGAGTATCACGACGGTGGTCCAAAGTGACACTGA
AGAGCTGCAGCCTTTCGATGCGATGGATGATATCCACCTTGAGTCTCCCG
CAGGCCCTCCACCGGATGTGACCCCTTCTGATCAGGAGATCCCGCTCAAG
GAACGGATTGTTAACTGGTTGCGAACAGCCGCCGCTGCCGGCTACGGCCT
GTCACTCCTCCTACACGGCTTGTTGCTGCTGTTGATGGCCTTGTGGTTCT
TCCCACAGATCAAGGAAGCCATGAGTATCACGACGGTGGTCCAAAGTGAC
ACTGAAGAGCTGCAGCCTTTCGATGCGATGGATGATATCCACCTTGAGTC
TCCCGCAGGC
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