mRNA_M-pyrifera_M_contig98609.22703.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98609.22703.1
Unique NamemRNA_M-pyrifera_M_contig98609.22703.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98609.22703.1 vs. uniprot
Match: A0A517WAI2_9PLAN (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WAI2_9PLAN)

HSP 1 Score: 206 bits (525), Expect = 1.970e-65
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MSFDRAVSLARYNWPLYLTCCLVAAVGFTIWTTQLGPPLILYLGLFGAVVATWYAIASFVAFHIMFDRPDFLSGDWLTRCVELPPQSCVQLSICVEETTLPV 306
            MSFDRAVSLARYNWPLYLTCCLVAAVGFTIWT+QLGPP ILYLGLF AVVATWYAIASFVAFHIMFD PDFLSGDWLTRCVELPPQSCVQLSICVEETTLPV
Sbjct:    1 MSFDRAVSLARYNWPLYLTCCLVAAVGFTIWTSQLGPPPILYLGLFCAVVATWYAIASFVAFHIMFDHPDFLSGDWLTRCVELPPQSCVQLSICVEETTLPV 102
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BLAST of mRNA_M-pyrifera_M_contig98609.22703.1 vs. uniprot
Match: A0A517X1B6_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X1B6_9PLAN)

HSP 1 Score: 172 bits (437), Expect = 9.430e-52
Identity = 81/102 (79.41%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 MSFDRAVSLARYNWPLYLTCCLVAAVGFTIWTTQLGPPLILYLGLFGAVVATWYAIASFVAFHIMFDRPDFLSGDWLTRCVELPPQSCVQLSICVEETTLPV 306
            MSFDRAVSLARYNWPLYLTC L AAVGFTIWT QL P  I YLG  GA+VATWYAI+SFVAF++MFDR DFLSG+WLT CVE  PQ+CVQLS+CVEETTLP+
Sbjct:   39 MSFDRAVSLARYNWPLYLTCFLGAAVGFTIWTIQLVPSPIRYLGFLGALVATWYAISSFVAFYVMFDRSDFLSGEWLTHCVEQSPQTCVQLSVCVEETTLPI 140
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98609.22703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A517WAI2_9PLAN1.970e-6596.08Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A517X1B6_9PLAN9.430e-5279.41Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98609contigM-pyrifera_M_contig98609:4..309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816903.3368824-CDS-M-pyrifera_M_contig98609:3..3091622816903.3368824-CDS-M-pyrifera_M_contig98609:3..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98609 4..309 -
1692278246.2416542-CDS-M-pyrifera_M_contig98609:3..3091692278246.2416542-CDS-M-pyrifera_M_contig98609:3..309Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98609 4..309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98609.22703.1prot_M-pyrifera_M_contig98609.22703.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98609 4..309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98609.22703.1

>prot_M-pyrifera_M_contig98609.22703.1 ID=prot_M-pyrifera_M_contig98609.22703.1|Name=mRNA_M-pyrifera_M_contig98609.22703.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MSFDRAVSLARYNWPLYLTCCLVAAVGFTIWTTQLGPPLILYLGLFGAVV
ATWYAIASFVAFHIMFDRPDFLSGDWLTRCVELPPQSCVQLSICVEETTL
PV
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mRNA from alignment at M-pyrifera_M_contig98609:4..309-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98609.22703.1 ID=mRNA_M-pyrifera_M_contig98609.22703.1|Name=mRNA_M-pyrifera_M_contig98609.22703.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig98609:4..309- (Macrocystis pyrifera P11B4 male)
ATGAGTTTTGACCGCGCTGTTTCCCTCGCTCGATACAACTGGCCGCTTTA
CCTCACCTGCTGCCTGGTGGCAGCTGTTGGATTTACCATCTGGACGACCC
AGCTGGGGCCGCCGCTCATCCTTTACCTGGGACTCTTCGGTGCTGTGGTT
GCGACCTGGTATGCGATCGCGTCTTTCGTCGCATTTCACATCATGTTTGA
TCGTCCTGATTTTCTTTCCGGTGATTGGCTGACTCGTTGCGTCGAACTGC
CGCCCCAATCATGTGTCCAACTAAGTATCTGCGTCGAGGAAACGACTCTC
CCAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98609:4..309-

>mRNA_M-pyrifera_M_contig98609.22703.1 ID=mRNA_M-pyrifera_M_contig98609.22703.1|Name=mRNA_M-pyrifera_M_contig98609.22703.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig98609:4..309- (Macrocystis pyrifera P11B4 male)
ATGAGTTTTGACCGCGCTGTTTCCCTCGCTCGATACAACTGGCCGCTTTA
CCTCACCTGCTGCCTGGTGGCAGCTGTTGGATTTACCATCTGGACGACCC
AGCTGGGGCCGCCGCTCATCCTTTACCTGGGACTCTTCGGTGCTGTGGTT
GCGACCTGGTATGCGATCGCGTCTTTCGTCGCATTTCACATCATGTTTGA
TCGTCCTGATTTTCTTTCCGGTGATTGGCTGACTCGTTGCGTCGAACTGC
CGCCCCAATCATGTGTCCAACTAAGTATCTGCGTCGAGGAAACGACTCTC
CCAGTCATGAGTTTTGACCGCGCTGTTTCCCTCGCTCGATACAACTGGCC
GCTTTACCTCACCTGCTGCCTGGTGGCAGCTGTTGGATTTACCATCTGGA
CGACCCAGCTGGGGCCGCCGCTCATCCTTTACCTGGGACTCTTCGGTGCT
GTGGTTGCGACCTGGTATGCGATCGCGTCTTTCGTCGCATTTCACATCAT
GTTTGATCGTCCTGATTTTCTTTCCGGTGATTGGCTGACTCGTTGCGTCG
AACTGCCGCCCCAATCATGTGTCCAACTAAGTATCTGCGTCGAGGAAACG
ACTCTCCCAGTC
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