mRNA_M-pyrifera_M_contig98521.22688.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98521.22688.1
Unique NamemRNA_M-pyrifera_M_contig98521.22688.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A7S1CC85_9STRA (Arginyl-tRNA synthetase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC85_9STRA)

HSP 1 Score: 229 bits (584), Expect = 3.560e-68
Identity = 106/189 (56.08%), Postives = 145/189 (76.72%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGW 567
            FGMLIAHLKD  P      + PP IADLT FYK AK+RFD+E +FK+R+ +EVVALQ+GD  N+ LW+ +  +S  MF ++YR+LGID RL++CGESFYN  +AGV E++EK+GL E+  GA +++++G   PL+ +KSDGG+GYDSTDLAAI YR+H L   WL+YV+D+GQ+LH  LV++ A++ GW
Sbjct:  367 FGMLIAHLKDAYPDFE---SNPPNIADLTAFYKAAKVRFDAEEDFKKRAHSEVVALQAGDATNVRLWKLICAISEAMFRDVYRKLGIDERLEVCGESFYNPMLAGVCEELEKRGLAEESDGALVLKVEGHSVPLMVRKSDGGFGYDSTDLAAIRYRIHELGCKWLIYVVDAGQSLHFDLVFKGAQRAGW 552
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A5A8CT33_CAFRO (Arginine--tRNA ligase n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8CT33_CAFRO)

HSP 1 Score: 230 bits (586), Expect = 2.580e-67
Identity = 116/191 (60.73%), Postives = 145/191 (75.92%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFD--SEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGW 567
            FGML+AHLKDT P   +     P I++LT  YKEAK+RFD  S+PEFK+R+  EVVALQ+GDE N+ LWR MVEVSA MFN++Y+RLG+ P L LCGESFYN  I   +E++  KGL+ ++ GA L+ I+G   PL+ +KSDGGYGYDSTDLAAI YR+  LKADWLVYVID+GQALHL+L ++ A   GW
Sbjct:  456 FGMLLAHLKDTFP---DYETRTPDISNLTVLYKEAKVRFDDKSDPEFKQRAYKEVVALQAGDEVNLRLWRTMVEVSAAMFNDVYKRLGVHPGLYLCGESFYNPLIPSTIEELSSKGLLTEDEGALLMFIEGEKVPLMVRKSDGGYGYDSTDLAAIRYRIQDLKADWLVYVIDAGQALHLRLTFKAAEVAGW 643
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A482UFM7_9ARCH (Arginine--tRNA ligase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFM7_9ARCH)

HSP 1 Score: 216 bits (550), Expect = 8.930e-65
Identity = 108/189 (57.14%), Postives = 141/189 (74.60%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGW 567
            FGMLIAHLKD     GE  +    +  LT FYK AK+RFD+EPEFKER+  EVVALQ+GD  N+ LWR MV++S   ++E+Y+RL +DPRL+LCGESFYNDKIA ++ ++E  G      GA ++ + G   PL+ +KSDGG+GYDSTDLAAI YRLH LKAD LVYV+D+GQ+LH +LV++ A++ GW
Sbjct:   85 FGMLIAHLKDMQ-ARGESISVD--MGGLTAFYKAAKVRFDTEPEFKERAHKEVVALQAGDATNLELWRSMVKLSQATYDEVYQRLQVDPRLELCGESFYNDKIAPIIAELEGSGRAVISEGALIVPVPGSEVPLMLRKSDGGFGYDSTDLAAIRYRLHTLKADVLVYVVDAGQSLHFELVFKGAQQAGW 270
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A196SMP6_BLAHN (Arginine--tRNA ligase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SMP6_BLAHN)

HSP 1 Score: 216 bits (551), Expect = 1.400e-64
Identity = 101/190 (53.16%), Postives = 139/190 (73.16%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGWL 570
            FGMLIAHL+D  P        PP I DLT FYKEAK++FD +P FKER+  EVV LQSG EQN+ +W+ +  VS +MF+ +Y  L +DPRLK+ GESFYN  +  +++++ +KGL++++ GAK++   GF  PLI QK DGG+GYDSTD+ A+ YR+  +KADW++YV+DSGQALH Q V++ AR  GW+
Sbjct:  185 FGMLIAHLQDIAPDFE---TNPPSIEDLTVFYKEAKVKFDKDPAFKERAHQEVVNLQSGKEQNIKMWKLLCAVSEKMFSRVYAMLNVDPRLKMMGESFYNPLMPAMVKELGEKGLLKEDDGAKVLFPTGFETPLIIQKRDGGFGYDSTDMTALKYRIQEMKADWIIYVVDSGQALHFQQVFQAARDAGWV 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A196SKB0_BLAHN (Arginine--tRNA ligase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SKB0_BLAHN)

HSP 1 Score: 216 bits (551), Expect = 3.930e-64
Identity = 101/190 (53.16%), Postives = 139/190 (73.16%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGWL 570
            FGMLIAHL+D  P        PP I DLT FYKEAK++FD +P FKER+  EVV LQSG EQN+ +W+ +  VS +MF+ +Y  L +DPRLK+ GESFYN  +  +++++ +KGL++++ GAK++   GF  PLI QK DGG+GYDSTD+ A+ YR+  +KADW++YV+DSGQALH Q V++ AR  GW+
Sbjct:  185 FGMLIAHLQDIAPDFE---TNPPSIEDLTVFYKEAKVKFDEDPAFKERAHQEVVNLQSGKEQNIKMWKLLCAVSEKMFSRVYAMLNVDPRLKMMGESFYNPLMPAMVKELGEKGLLKEDDGAKVLFPTGFETPLIIQKRDGGFGYDSTDMTALKYRIQEMKADWIIYVVDSGQALHFQQVFQAARDAGWV 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: D8M593_BLAHO (Arginine--tRNA ligase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M593_BLAHO)

HSP 1 Score: 214 bits (545), Expect = 3.560e-63
Identity = 100/190 (52.63%), Postives = 138/190 (72.63%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGWL 570
            FGMLIAHL+D  P        PP I DLT FYK AK +FD +  F+ER+  EVV LQSG  +N+A+W+ +  VS +MF+++Y+ L +DPRLK+ GESFYN  +  ++++++ KGL++D  GAK++   GF  PLI QKSDGG+GYDSTD+ AI YR+  +KADW++YV+DSGQALH Q V++ AR  GW+
Sbjct:  185 FGMLIAHLQDIAPDFE---TNPPSIEDLTVFYKAAKCKFDEDKAFQERAHQEVVNLQSGVPKNLAMWKTLCSVSEKMFSKVYKMLNVDPRLKMMGESFYNPLLPAMVKELDAKGLLQDSDGAKVLFPQGFEVPLIIQKSDGGFGYDSTDMTAIKYRIQEMKADWIIYVVDSGQALHFQQVFQAARDAGWV 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: UPI000711FA60 (arginine--tRNA cytoplasmic-like protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711FA60)

HSP 1 Score: 211 bits (537), Expect = 4.850e-62
Identity = 99/191 (51.83%), Postives = 139/191 (72.77%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLI-EDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGWL 570
            FGMLIAHL+D +P        PP I DLT FYK+AK +FD +  F++R+  EVV LQSG E+N+ +W+ +   S  +F+++Y+ L +DPRLK+ GESFYN  +  +++++++KGL+ ED  GAK++   GF APLI QK DGG+GYD TD+ A+ YR+  LKADWL+YV+DSGQALH Q V+E AR+ GW+
Sbjct:  188 FGMLIAHLEDISPDFENN---PPSIEDLTVFYKQAKQKFDEDEAFRDRAHQEVVNLQSGKEKNIRMWKMLCSASERLFSKVYKMLNVDPRLKMMGESFYNPLLPQMVKELDEKGLLKEDSNGAKVLFPKGFDAPLIIQKKDGGFGYDGTDMTALKYRIQELKADWLIYVVDSGQALHFQQVFEAAREAGWV 375
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: D8M295_BLAHO (Arginine--tRNA ligase n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M295_BLAHO)

HSP 1 Score: 194 bits (493), Expect = 7.470e-57
Identity = 90/189 (47.62%), Postives = 130/189 (68.78%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGW 567
            FGML+ +LK+ N   G   +    I DLT  Y+ AK+RFD +P F+  S  EVV LQ G+   +++W+++  +S +M+  +Y+RLGIDPRLK  GESFYN  +  +++++E K L+ D+ G+K++ +  F  PLI QK DGG+GYDSTDL A+ YR  V KADW++YV+DSGQ+LH Q ++E  RK GW
Sbjct:   39 FGMLLCYLKEINSSNGNSLS----IEDLTALYRAAKVRFDEDPTFRLHSHQEVVNLQKGEPWELSVWKQLCALSCQMYQTIYQRLGIDPRLKTQGESFYNPFLPELVKELESKNLLTDQEGSKVMFVPNFDVPLIIQKKDGGFGYDSTDLMALKYRTLVTKADWIIYVVDSGQSLHFQQLFEAGRKAGW 223
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A7S2XZ92_9STRA (Arginine--tRNA ligase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ92_9STRA)

HSP 1 Score: 191 bits (486), Expect = 7.320e-56
Identity = 97/189 (51.32%), Postives = 127/189 (67.20%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGW 567
            FGMLI +LK+  P        PP I DLT FYK AK+RFD  PEFK+ ++  VV LQSGDEQ   +W  + E+S   F ++Y RL +  +L  CGESFYN  I GV+E++E K L++++ GAK+I +D F  PLI +KSDGGYGYDSTD+AA+ YRL  L   W+VYV D+GQA H   V++ A+  GW
Sbjct:   50 FGMLIQYLKEEYPDFL---TQPPNITDLTSFYKAAKMRFDESPEFKKIAQLNVVKLQSGDEQCRKIWHLLCEISRVEFEKVYSRLQV--KLVECGESFYNPMIPGVIEELESKQLVKEDNGAKVIFLDHFKFPLIVRKSDGGYGYDSTDMAAVQYRLKQLGCSWVVYVTDAGQAEHFYNVFDAAKAAGW 233
[Close]
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Match: A0A8K0AJJ3_ANDGO (Mitochondrial arginyl-tRNA synthetase (ArgRS) n=1 Tax=Andalucia godoyi TaxID=505711 RepID=A0A8K0AJJ3_ANDGO)

HSP 1 Score: 192 bits (487), Expect = 7.530e-55
Identity = 97/190 (51.05%), Postives = 128/190 (67.37%), Query Frame = 1 
Query:    1 FGMLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAEVVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDKIAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAAIWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGWL 570
            FGMLIA+LK+  P   E    PP IADL  FY+ AK RFD + EFK R+  EVVALQSGD+ N+  W+ + ++S   F ++Y RL  D +L   GESFYN  I  VL+ +E +GL++D+ GAK I       PLI +KSDGGY YDSTD+ AIWYR+   KADW++YV+DSGQ  H +LV++ A+  GW+
Sbjct:  173 FGMLIAYLKEEFPDFLEN---PPKIADLQAFYRAAKTRFDKDEEFKGRAHGEVVALQSGDKNNLTAWKMICDISRMEFEKIYNRL--DVKLDEMGESFYNPHIPNVLKILEDQGLVQDDQGAKCIFRPIKSYPLIVRKSDGGYTYDSTDMTAIWYRIFQQKADWIIYVVDSGQGEHFELVFDAAKAAGWI 357
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98521.22688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CC85_9STRA3.560e-6856.08Arginyl-tRNA synthetase (Fragment) n=1 Tax=Bicosoe... [more]
A0A5A8CT33_CAFRO2.580e-6760.73Arginine--tRNA ligase n=6 Tax=Sar TaxID=2698737 Re... [more]
A0A482UFM7_9ARCH8.930e-6557.14Arginine--tRNA ligase (Fragment) n=1 Tax=archaeon ... [more]
A0A196SMP6_BLAHN1.400e-6453.16Arginine--tRNA ligase n=1 Tax=Blastocystis sp. sub... [more]
A0A196SKB0_BLAHN3.930e-6453.16Arginine--tRNA ligase n=1 Tax=Blastocystis sp. sub... [more]
D8M593_BLAHO3.560e-6352.63Arginine--tRNA ligase n=1 Tax=Blastocystis hominis... [more]
UPI000711FA604.850e-6251.83arginine--tRNA cytoplasmic-like protein n=1 Tax=Bl... [more]
D8M295_BLAHO7.470e-5747.62Arginine--tRNA ligase n=1 Tax=Blastocystis hominis... [more]
A0A7S2XZ92_9STRA7.320e-5651.32Arginine--tRNA ligase (Fragment) n=1 Tax=Fibrocaps... [more]
A0A8K0AJJ3_ANDGO7.530e-5551.05Mitochondrial arginyl-tRNA synthetase (ArgRS) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98521contigM-pyrifera_M_contig98521:130..699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue6e-44
Seed eggNOG ortholog159749.K0R2R2
Preferred nameRARS
KEGG rclassRC00055,RC00523
KEGG koko:K01887
KEGG ReactionR03646
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000049,GO:0000122,GO:0000166,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004814,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010154,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016597,GO:0016874,GO:0016875,GO:0017076,GO:0017101,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034618,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048316,GO:0048518,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2XAFN@2836,COG0018@1,KOG4426@2759
EC6.1.1.19
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons1
Model size570
Cds size564
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.5932157-CDS-M-pyrifera_M_contig98521:129..6931622816902.5932157-CDS-M-pyrifera_M_contig98521:129..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98521 130..693 -
1692278245.7941172-CDS-M-pyrifera_M_contig98521:129..6931692278245.7941172-CDS-M-pyrifera_M_contig98521:129..693Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98521 130..693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.6062531-UTR-M-pyrifera_M_contig98521:693..6991622816902.6062531-UTR-M-pyrifera_M_contig98521:693..699Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98521 694..699 -
1692278245.8108618-UTR-M-pyrifera_M_contig98521:693..6991692278245.8108618-UTR-M-pyrifera_M_contig98521:693..699Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98521 694..699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98521.22688.1prot_M-pyrifera_M_contig98521.22688.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98521 130..693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98521.22688.1

>prot_M-pyrifera_M_contig98521.22688.1 ID=prot_M-pyrifera_M_contig98521.22688.1|Name=mRNA_M-pyrifera_M_contig98521.22688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
MLIAHLKDTNPGCGEPGAPPPPIADLTKFYKEAKLRFDSEPEFKERSKAE
VVALQSGDEQNMALWRKMVEVSAEMFNELYRRLGIDPRLKLCGESFYNDK
IAGVLEKIEKKGLIEDEGGAKLIRIDGFGAPLIAQKSDGGYGYDSTDLAA
IWYRLHVLKADWLVYVIDSGQALHLQLVYETARKMGWL
back to top

mRNA from alignment at M-pyrifera_M_contig98521:130..699-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98521.22688.1 ID=mRNA_M-pyrifera_M_contig98521.22688.1|Name=mRNA_M-pyrifera_M_contig98521.22688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig98521:130..699- (Macrocystis pyrifera P11B4 male)
TTTGGGATGCTGATCGCACATCTCAAAGACACCAACCCAGGGTGTGGAGA
GCCTGGTGCCCCTCCACCTCCTATTGCCGACCTTACCAAGTTCTACAAGG
AGGCCAAGTTGCGGTTTGACAGTGAACCAGAATTCAAGGAGCGTTCCAAG
GCAGAAGTGGTGGCATTGCAAAGTGGCGACGAACAAAACATGGCCTTGTG
GAGGAAGATGGTGGAAGTGTCAGCAGAAATGTTCAACGAACTCTACCGTC
GATTGGGCATTGACCCTCGTCTCAAGCTGTGTGGTGAGAGCTTTTACAAT
GACAAGATTGCTGGTGTGTTGGAGAAGATTGAGAAGAAGGGCCTCATTGA
AGACGAAGGAGGCGCCAAGCTCATTCGAATTGACGGCTTTGGAGCTCCGC
TCATTGCTCAAAAGTCGGATGGAGGGTACGGGTATGACTCCACCGATCTC
GCAGCCATCTGGTACCGCTTGCATGTGCTCAAGGCTGATTGGCTCGTGTA
TGTGATTGACAGTGGCCAAGCGTTGCACTTGCAGCTCGTGTATGAAACTG
CCCGCAAGATGGGTTGGCTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig98521:130..699-

>mRNA_M-pyrifera_M_contig98521.22688.1 ID=mRNA_M-pyrifera_M_contig98521.22688.1|Name=mRNA_M-pyrifera_M_contig98521.22688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig98521:130..699- (Macrocystis pyrifera P11B4 male)
ATGCTGATCGCACATCTCAAAGACACCAACCCAGGGTGTGGAGAGCCTGG
TGCCCCTCCACCTCCTATTGCCGACCTTACCAAGTTCTACAAGGAGGCCA
AGTTGCGGTTTGACAGTGAACCAGAATTCAAGGAGCGTTCCAAGGCAGAA
GTGGTGGCATTGCAAAGTGGCGACGAACAAAACATGGCCTTGTGGAGGAA
GATGGTGGAAGTGTCAGCAGAAATGTTCAACGAACTCTACCGTCGATTGG
GCATTGACCCTCGTCTCAAGCTGTGTGGTGAGAGCTTTTACAATGACAAG
ATTGCTGGTGTGTTGGAGAAGATTGAGAAGAAGGGCCTCATTGAAGACGA
AGGAGGCGCCAAGCTCATTCGAATTGACGGCTTTGGAGCTCCGCTCATTG
CTCAAAAGTCGGATGGAGGGTACGGGTATGACTCCACCGATCTCGCAGCC
ATCTGGTACCGCTTGCATGTGCTCAAGGCTGATTGGCTCGTGTATGTGAT
TGACAGTGGCCAAGCGTTGCACTTGCAGCTCGTGTATGAAACTGCCCGCA
AGATGGGTTGGCTTATGCTGATCGCACATCTCAAAGACACCAACCCAGGG
TGTGGAGAGCCTGGTGCCCCTCCACCTCCTATTGCCGACCTTACCAAGTT
CTACAAGGAGGCCAAGTTGCGGTTTGACAGTGAACCAGAATTCAAGGAGC
GTTCCAAGGCAGAAGTGGTGGCATTGCAAAGTGGCGACGAACAAAACATG
GCCTTGTGGAGGAAGATGGTGGAAGTGTCAGCAGAAATGTTCAACGAACT
CTACCGTCGATTGGGCATTGACCCTCGTCTCAAGCTGTGTGGTGAGAGCT
TTTACAATGACAAGATTGCTGGTGTGTTGGAGAAGATTGAGAAGAAGGGC
CTCATTGAAGACGAAGGAGGCGCCAAGCTCATTCGAATTGACGGCTTTGG
AGCTCCGCTCATTGCTCAAAAGTCGGATGGAGGGTACGGGTATGACTCCA
CCGATCTCGCAGCCATCTGGTACCGCTTGCATGTGCTCAAGGCTGATTGG
CTCGTGTATGTGATTGACAGTGGCCAAGCGTTGCACTTGCAGCTCGTGTA
TGAAACTGCCCGCAAGATGGGTTGGCTT
back to top