mRNA_M-pyrifera_M_contig98495.22678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98495.22678.1
Unique NamemRNA_M-pyrifera_M_contig98495.22678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: A0A6P7G212_DIAVI (lysosome membrane protein 2 isoform X1 n=3 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7G212_DIAVI)

HSP 1 Score: 60.8 bits (146), Expect = 7.120e-8
Identity = 43/147 (29.25%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   58 WASSSKDPVHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYSDGGKMVEFLE--WDHVGNCEQGPCHEKLVVPNLVMLALK------AKYGALIDDIVYDVVYGKDDFHKLWQERSVEELAFGYVDPVLEDFKTIL 474
            WA    +P    +Y +NV+NA E + +G+KP++NE     Y  + +R N+S  D G +   L+  +       +G   + +VVPN+ ML+        A++  L    + D++  K      + E SVE+L +GY DP+L+  K ++
Sbjct:   64 WAKPPVEP-KIRLYIYNVTNADEFLNNGSKPIVNELGPYVYRERWERKNISIHDNGTLTFNLQKIYHFDPEASKGSPDDLVVVPNIPMLSATSQSKHAARFLRLAMASIMDILKIKP-----FVEVSVEQLLWGYEDPLLKLAKDVV 204          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: A0A834J2U4_VESVU (Uncharacterized protein n=8 Tax=Vespinae TaxID=7439 RepID=A0A834J2U4_VESVU)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-6
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = 1
Query:   49 YGVWASSSKDPVHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYSDGGKMVEFLEWDHVGNCE--QGPCHEKLVVPNLVMLAL--KAKYGA----LIDDIVYDVVYGKDDFHKLWQERSVEELAFGYVDPVLEDFKTIL 474
            YG W +    P    +Y +NV+NA E + +G KPVL+E     Y+   +++ + +++   +   +   +V   E   G   + +VVPN+ ML+   ++KY A    L    + D++  K      + E SVE+L +GY DP+L+  K ++
Sbjct:   61 YGWWKAPPVIP-RLHVYIYNVTNADEFLNNGEKPVLDELGPYVYSQHWEKVEIKFNENDTVSYKIRKQYVFTPELSSGSDDDLVVVPNVPMLSATSQSKYAARFLRLAMASIMDILKIKP-----FVEVSVEQLLWGYEDPLLKLAKDVV 204          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: UPI001CFA2DBE (lysosome membrane protein 2-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFA2DBE)

HSP 1 Score: 56.2 bits (134), Expect = 2.790e-6
Identity = 36/139 (25.90%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   82 VHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYSDGG-------KMVEFLEWDHVGNCEQGPCHEKLVVPNLVMLAL--KAKYGALIDDIVYDVVYGKDDFHKLWQERSVEELAFGYVDPVLEDFKTI 471
            ++ + + +N++N  EV+  G KP++ E     Y   + ++++ + +         K   F +   VGN    P  E + V NL M+ +   AK G +I++ +  ++      H L+Q  +V+EL +GY DP+L++F  +
Sbjct:  162 IYTDFFIFNITNPREVLE-GKKPIVKELGPYVYREYRSKVDIVFYENNTVSAISPKSFVFEKDTSVGN----PKEETVTVINLPMITMLTMAKQGGIIEEFILSLLSNMQHIH-LFQTHTVDELLWGYEDPLLKEFNKL 294          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: UPI001CAA0F65 (scavenger receptor class B member 1 n=3 Tax=Polistes TaxID=7456 RepID=UPI001CAA0F65)

HSP 1 Score: 55.8 bits (133), Expect = 3.860e-6
Identity = 43/150 (28.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   49 YGVWASSSKDPVHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYSDGGKMVEFLEWDHVGNCEQ--GPCHEKLVVPNLVMLAL--KAKYGA----LIDDIVYDVVYGKDDFHKLWQERSVEELAFGYVDPVLEDFKTIL 474
            +G W +    P+ + IY +NV+NA E + +G KP+LNE     Y  + ++ +++++    +   +   +V   E   G   + +VVPN+ ML+   ++KY A    L    + D++  K      + E SVE+L +GY DP+L+  K ++
Sbjct:   61 FGWWKAPPVTPLLH-IYIYNVTNADEFLNNGDKPILNELGPYVYKQRWEKADITFNGNDTISYKIRKTYVFTPELSVGSDDDLVVVPNVPMLSATSQSKYAARFLRLAMASIMDILKIKP-----FVEVSVEQLLWGYEDPLLKLAKDVV 204          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: A0A0J7L9G5_LASNI (Scavenger receptor class b member 1 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7L9G5_LASNI)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-5
Identity = 41/150 (27.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query:   49 YGVWASSSKDPVHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYSDGGKMVEFLEWDHVGN--CEQGPCHEKLVVPNLVMLALK------AKYGALIDDIVYDVVYGKDDFHKLWQERSVEELAFGYVDPVLEDFKTIL 474
            Y  W      P   +IY +NV+NA E + +G KP L E     Y    +++++ ++D G +   ++     N     G   + +VVPN+ ML+        A++  L    + D++  K      + E SVE+L +GY DP+L+  K ++
Sbjct:   51 YKFWKEPPVVP-RLQIYIYNVTNADEFLNNGEKPALQELGPYVYLQHWEKVDIKFNDNGTVSYKVKKTFTFNESLSAGSQDDLVVVPNVPMLSATSQSKHAARFLRLAMASIMDILKIKP-----FVEVSVEQLLWGYEDPLLKLAKDVV 194          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: C5LMP4_PERM5 (Uncharacterized protein n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LMP4_PERM5)

HSP 1 Score: 53.5 bits (127), Expect = 2.620e-5
Identity = 34/115 (29.57%), Postives = 53/115 (46.09%), Query Frame = 1
Query:   58 WASSSKDP----------VHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYSDGGKMVEFL-EWDHVGNC------EQGPCHEKLVVPNLVMLALKAKYGALID 351
            W  +SKD           + Y+ Y +NV+N AEV++ GAKP++ E +       Q+RI  S   G    E +  W+           E     EK+VVPNL +L+   + G  ++
Sbjct:  115 WCDASKDGCSKPDMCLKGMPYDFYAFNVTNPAEVLKDGAKPIVQELRPIHAAQTQERIEASVDVGKWNKEGIAHWNETNTFVFADKDETNLLQEKVVVPNLALLSTVTEMGQTVN 229          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: C5LZH4_PERM5 (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LZH4_PERM5)

HSP 1 Score: 52.8 bits (125), Expect = 3.280e-5
Identity = 33/115 (28.70%), Postives = 51/115 (44.35%), Query Frame = 1
Query:   58 WASSSKDP----------VHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYS-DGGKMVEFLEWDHVGNC------EQGPCHEKLVVPNLVMLALKAKYGALID 351
            W  +SKD           + Y+ Y +NV+N AEV++ GAKP++ E +       Q+RI  S   D         W+           E     EK+VVPNL +L+   + G  ++
Sbjct:  115 WCDASKDGCSKPDMCLKGMPYDFYAFNVTNPAEVLKDGAKPIVQELRPIHAAQTQERIEASVDVDKWNKEGIAHWNETNTFVFADKDETNLLQEKVVVPNLALLSTVTEMGQTVN 229          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: UPI00106D343E (lysosome membrane protein 2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D343E)

HSP 1 Score: 52.8 bits (125), Expect = 4.510e-5
Identity = 42/152 (27.63%), Postives = 70/152 (46.05%), Query Frame = 1
Query:   49 YGVWASSSKDPVHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLK--QDRINVSYSDGGKMVEFLE-----WDHVGNCEQGPCH-EKLVVPNLVMLALKAKYGALIDDIVYDVVYG---KDDFHKLWQERSVEELAFGYVDPVLEDFKTI 471
            Y  WA  +  PV  + Y +NV N  EV++ GAKPVL E     YTL   Q + N+++ D    V + E     +D   +CE    + +K+   N+ ++ +        D   +  + G   +     L+  R V +L +GY DP+L +   +
Sbjct:   75 YKPWAEPTM-PVPNKYYFFNVVNPDEVVKDGAKPVLEEK--GPYTLLSYQKKFNITWQDKDGTVSYDEKSWFIYDSASSCESCDLYNDKITTVNMPLMVVVEMLKKYPDFFHWKRLVGGILRRYKETLFMTRKVNDLIWGYEDPLLVEINKL 223          
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Match: C5KYW7_PERM5 (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KYW7_PERM5)

HSP 1 Score: 52.8 bits (125), Expect = 4.650e-5
Identity = 33/115 (28.70%), Postives = 51/115 (44.35%), Query Frame = 1
Query:   58 WASSSKDP----------VHYEIYGWNVSNAAEVMRSGAKPVLNETKFAQYTLKQDRINVSYS-DGGKMVEFLEWDHVGNC------EQGPCHEKLVVPNLVMLALKAKYGALID 351
            W  +SKD           + Y+ Y +NV+N AEV++ GAKP++ E +       Q+RI  S   D         W+           E     EK+VVPNL +L+   + G  ++
Sbjct:   44 WCDASKDGCSKPDMCLKGMPYDFYAFNVTNPAEVLKDGAKPIVQELRPIHAAQTQERIEASVDVDKWNKEGIAHWNETNTFVFADKDETNLLQEKVVVPNLALLSTVTEMGQTVN 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98495.22678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6P7G212_DIAVI7.120e-829.25lysosome membrane protein 2 isoform X1 n=3 Tax=Dia... [more]
A0A834J2U4_VESVU1.130e-628.67Uncharacterized protein n=8 Tax=Vespinae TaxID=743... [more]
UPI001CFA2DBE2.790e-625.90lysosome membrane protein 2-like n=1 Tax=Protopter... [more]
UPI001CAA0F653.860e-628.67scavenger receptor class B member 1 n=3 Tax=Polist... [more]
A0A0J7L9G5_LASNI1.770e-527.33Scavenger receptor class b member 1 n=1 Tax=Lasius... [more]
C5LMP4_PERM52.620e-529.57Uncharacterized protein n=1 Tax=Perkinsus marinus ... [more]
C5LZH4_PERM53.280e-528.70Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
UPI00106D343E4.510e-527.63lysosome membrane protein 2-like n=1 Tax=Dendronep... [more]
C5KYW7_PERM54.650e-528.70Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98495contigM-pyrifera_M_contig98495:194..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816902.216785-CDS-M-pyrifera_M_contig98495:193..6671622816902.216785-CDS-M-pyrifera_M_contig98495:193..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98495 194..667 +
1692278245.5882795-CDS-M-pyrifera_M_contig98495:193..6671692278245.5882795-CDS-M-pyrifera_M_contig98495:193..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98495 194..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98495.22678.1prot_M-pyrifera_M_contig98495.22678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98495 194..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98495.22678.1

>prot_M-pyrifera_M_contig98495.22678.1 ID=prot_M-pyrifera_M_contig98495.22678.1|Name=mRNA_M-pyrifera_M_contig98495.22678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
SQLQDAVSIDSKDATGYGVWASSSKDPVHYEIYGWNVSNAAEVMRSGAKP
VLNETKFAQYTLKQDRINVSYSDGGKMVEFLEWDHVGNCEQGPCHEKLVV
PNLVMLALKAKYGALIDDIVYDVVYGKDDFHKLWQERSVEELAFGYVDPV
LEDFKTIL
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mRNA from alignment at M-pyrifera_M_contig98495:194..667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98495.22678.1 ID=mRNA_M-pyrifera_M_contig98495.22678.1|Name=mRNA_M-pyrifera_M_contig98495.22678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig98495:194..667+ (Macrocystis pyrifera P11B4 male)
AGTCAGCTACAAGATGCAGTATCGATTGATAGCAAAGACGCGACGGGTTA TGGAGTTTGGGCGAGTAGTAGCAAGGATCCGGTGCATTACGAAATTTACG GCTGGAATGTGAGCAACGCAGCCGAAGTGATGCGTTCGGGCGCGAAGCCA GTGTTGAATGAGACCAAGTTTGCGCAGTATACGCTGAAGCAAGACCGGAT CAACGTTTCGTACAGCGATGGCGGCAAGATGGTGGAGTTTTTGGAGTGGG ATCACGTTGGAAATTGCGAGCAAGGGCCGTGTCACGAGAAGCTGGTGGTG CCCAACTTGGTGATGCTTGCACTCAAAGCCAAATACGGGGCTTTGATCGA CGACATTGTGTACGATGTTGTGTATGGCAAAGACGACTTCCACAAGCTGT GGCAGGAACGAAGCGTTGAGGAGCTGGCGTTTGGGTATGTGGATCCGGTG CTGGAAGACTTCAAGACGATTCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98495:194..667+

>mRNA_M-pyrifera_M_contig98495.22678.1 ID=mRNA_M-pyrifera_M_contig98495.22678.1|Name=mRNA_M-pyrifera_M_contig98495.22678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig98495:194..667+ (Macrocystis pyrifera P11B4 male)
AGTCAGCTACAAGATGCAGTATCGATTGATAGCAAAGACGCGACGGGTTA
TGGAGTTTGGGCGAGTAGTAGCAAGGATCCGGTGCATTACGAAATTTACG
GCTGGAATGTGAGCAACGCAGCCGAAGTGATGCGTTCGGGCGCGAAGCCA
GTGTTGAATGAGACCAAGTTTGCGCAGTATACGCTGAAGCAAGACCGGAT
CAACGTTTCGTACAGCGATGGCGGCAAGATGGTGGAGTTTTTGGAGTGGG
ATCACGTTGGAAATTGCGAGCAAGGGCCGTGTCACGAGAAGCTGGTGGTG
CCCAACTTGGTGATGCTTGCACTCAAAGCCAAATACGGGGCTTTGATCGA
CGACATTGTGTACGATGTTGTGTATGGCAAAGACGACTTCCACAAGCTGT
GGCAGGAACGAAGCGTTGAGGAGCTGGCGTTTGGGTATGTGGATCCGGTG
CTGGAAGACTTCAAGACGATTCTGAGTCAGCTACAAGATGCAGTATCGAT
TGATAGCAAAGACGCGACGGGTTATGGAGTTTGGGCGAGTAGTAGCAAGG
ATCCGGTGCATTACGAAATTTACGGCTGGAATGTGAGCAACGCAGCCGAA
GTGATGCGTTCGGGCGCGAAGCCAGTGTTGAATGAGACCAAGTTTGCGCA
GTATACGCTGAAGCAAGACCGGATCAACGTTTCGTACAGCGATGGCGGCA
AGATGGTGGAGTTTTTGGAGTGGGATCACGTTGGAAATTGCGAGCAAGGG
CCGTGTCACGAGAAGCTGGTGGTGCCCAACTTGGTGATGCTTGCACTCAA
AGCCAAATACGGGGCTTTGATCGACGACATTGTGTACGATGTTGTGTATG
GCAAAGACGACTTCCACAAGCTGTGGCAGGAACGAAGCGTTGAGGAGCTG
GCGTTTGGGTATGTGGATCCGGTGCTGGAAGACTTCAAGACGATTCTG
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