mRNA_M-pyrifera_M_contig98289.22639.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98289.22639.1
Unique NamemRNA_M-pyrifera_M_contig98289.22639.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98289.22639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98289contigM-pyrifera_M_contig98289:257..679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.7
Seed ortholog evalue9.7e-15
Seed eggNOG ortholog4096.XP_009785858.1
KEGG koko:K10691
KEGG Pathwayko05165,ko05203,map05165,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005911,GO:0006810,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009506,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009791,GO:0009826,GO:0009914,GO:0009926,GO:0009987,GO:0010015,GO:0010016,GO:0010033,GO:0010101,GO:0010102,GO:0010229,GO:0010311,GO:0010817,GO:0016020,GO:0016043,GO:0016049,GO:0022414,GO:0022622,GO:0030054,GO:0032501,GO:0032502,GO:0032989,GO:0040007,GO:0042221,GO:0043207,GO:0044424,GO:0044444,GO:0044464,GO:0048281,GO:0048364,GO:0048367,GO:0048527,GO:0048528,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055044,GO:0060560,GO:0060918,GO:0061458,GO:0065007,GO:0065008,GO:0071840,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392,GO:1905393
EggNOG free text desc.Auxin transport protein (BIG)
EggNOG OGs37NYR@33090,3G7MS@35493,44IG7@71274,KOG1776@1,KOG1776@2759
EC2.3.2.27
COG Functional cat.T
Best tax levelasterids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons1
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.5850012-CDS-M-pyrifera_M_contig98289:256..6791622816900.5850012-CDS-M-pyrifera_M_contig98289:256..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98289 257..679 +
1692278244.6439142-CDS-M-pyrifera_M_contig98289:256..6791692278244.6439142-CDS-M-pyrifera_M_contig98289:256..679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98289 257..679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98289.22639.1prot_M-pyrifera_M_contig98289.22639.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98289 257..679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98289.22639.1

>prot_M-pyrifera_M_contig98289.22639.1 ID=prot_M-pyrifera_M_contig98289.22639.1|Name=mRNA_M-pyrifera_M_contig98289.22639.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MHDAVVFADCKADWIDVLCATIFGEFDGIERKHAKQLLRALCGSRGEYHL
VRDSRVFSSQEAKLRAIAEKYQDFRLELAYADVVALMQELKTTHKIAKSR
PENWKPYVAERPSLLTFLLKSVFYFDEEPTSLCLELVALAF
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mRNA from alignment at M-pyrifera_M_contig98289:257..679+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98289.22639.1 ID=mRNA_M-pyrifera_M_contig98289.22639.1|Name=mRNA_M-pyrifera_M_contig98289.22639.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig98289:257..679+ (Macrocystis pyrifera P11B4 male)
ATGCATGATGCTGTGGTGTTTGCTGACTGCAAGGCTGACTGGATCGATGT
ACTTTGTGCCACAATTTTTGGAGAGTTCGACGGGATTGAGCGGAAGCACG
CCAAGCAGCTCCTTCGGGCACTCTGTGGCTCTCGTGGCGAGTACCATCTT
GTGCGAGACAGCCGTGTCTTCTCTTCACAGGAAGCGAAGCTGCGTGCGAT
CGCCGAGAAGTACCAGGACTTTCGCCTGGAGCTGGCCTACGCCGACGTTG
TGGCCCTCATGCAGGAATTGAAGACCACTCACAAGATTGCCAAGAGCAGG
CCCGAGAATTGGAAGCCTTATGTTGCTGAGAGGCCGTCCCTCTTGACATT
CTTGTTGAAGTCTGTCTTCTATTTCGACGAAGAGCCCACGAGCCTCTGCC
TGGAACTGGTTGCGTTGGCATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98289:257..679+

>mRNA_M-pyrifera_M_contig98289.22639.1 ID=mRNA_M-pyrifera_M_contig98289.22639.1|Name=mRNA_M-pyrifera_M_contig98289.22639.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig98289:257..679+ (Macrocystis pyrifera P11B4 male)
ATGCATGATGCTGTGGTGTTTGCTGACTGCAAGGCTGACTGGATCGATGT
ACTTTGTGCCACAATTTTTGGAGAGTTCGACGGGATTGAGCGGAAGCACG
CCAAGCAGCTCCTTCGGGCACTCTGTGGCTCTCGTGGCGAGTACCATCTT
GTGCGAGACAGCCGTGTCTTCTCTTCACAGGAAGCGAAGCTGCGTGCGAT
CGCCGAGAAGTACCAGGACTTTCGCCTGGAGCTGGCCTACGCCGACGTTG
TGGCCCTCATGCAGGAATTGAAGACCACTCACAAGATTGCCAAGAGCAGG
CCCGAGAATTGGAAGCCTTATGTTGCTGAGAGGCCGTCCCTCTTGACATT
CTTGTTGAAGTCTGTCTTCTATTTCGACGAAGAGCCCACGAGCCTCTGCC
TGGAACTGGTTGCGTTGGCATTCATGCATGATGCTGTGGTGTTTGCTGAC
TGCAAGGCTGACTGGATCGATGTACTTTGTGCCACAATTTTTGGAGAGTT
CGACGGGATTGAGCGGAAGCACGCCAAGCAGCTCCTTCGGGCACTCTGTG
GCTCTCGTGGCGAGTACCATCTTGTGCGAGACAGCCGTGTCTTCTCTTCA
CAGGAAGCGAAGCTGCGTGCGATCGCCGAGAAGTACCAGGACTTTCGCCT
GGAGCTGGCCTACGCCGACGTTGTGGCCCTCATGCAGGAATTGAAGACCA
CTCACAAGATTGCCAAGAGCAGGCCCGAGAATTGGAAGCCTTATGTTGCT
GAGAGGCCGTCCCTCTTGACATTCTTGTTGAAGTCTGTCTTCTATTTCGA
CGAAGAGCCCACGAGCCTCTGCCTGGAACTGGTTGCGTTGGCATTC
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