mRNA_M-pyrifera_M_contig98205.22619.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98205.22619.1
Unique NamemRNA_M-pyrifera_M_contig98205.22619.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98205.22619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98205contigM-pyrifera_M_contig98205:3..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816899.6687682-CDS-M-pyrifera_M_contig98205:2..2131622816899.6687682-CDS-M-pyrifera_M_contig98205:2..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98205 3..213 -
1692278244.1913786-CDS-M-pyrifera_M_contig98205:2..2131692278244.1913786-CDS-M-pyrifera_M_contig98205:2..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98205 3..213 -
1622816899.6801386-CDS-M-pyrifera_M_contig98205:255..4401622816899.6801386-CDS-M-pyrifera_M_contig98205:255..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98205 256..440 -
1692278244.2042766-CDS-M-pyrifera_M_contig98205:255..4401692278244.2042766-CDS-M-pyrifera_M_contig98205:255..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98205 256..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98205.22619.1prot_M-pyrifera_M_contig98205.22619.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98205 3..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98205.22619.1

>prot_M-pyrifera_M_contig98205.22619.1 ID=prot_M-pyrifera_M_contig98205.22619.1|Name=mRNA_M-pyrifera_M_contig98205.22619.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
ASTEGGGSQLADSIDTEPLPSKEAIVIGMDDLDMKINKAESTIERLRKEK
ATAQTRKDVANIRGTHRELSHYNAVKKPKMHHSASFPATVPSHVLYRPRM
LQAMRRELLARKEKEVELAEQYNNLKEDWLKR
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mRNA from alignment at M-pyrifera_M_contig98205:3..440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98205.22619.1 ID=mRNA_M-pyrifera_M_contig98205.22619.1|Name=mRNA_M-pyrifera_M_contig98205.22619.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig98205:3..440- (Macrocystis pyrifera P11B4 male)
GCCAGCACGGAAGGAGGAGGCAGCCAGCTGGCCGACTCGATCGACACAGA
GCCCCTGCCGTCGAAGGAGGCGATTGTGATTGGCATGGACGACCTGGACA
TGAAGATTAACAAGGCAGAGAGCACCATCGAGAGGCTGAGGAAGGAGAAG
GCCACCGCGCAGACGAGGAAGGACGTGGCCAACATGTCACTCATCGAGAG
GATCCTCGTGGAGAACCAGACCACCAGCAGGGGCACGCACAGAGAACTGT
CCCACTACAACGCCGTCAAGAAGCCCAAGATGCACCACTCTGCCTCTTTC
CCTGCCACTGTGCCCTCCCATGTTCTCTATCGGCCGAGAATGCTCCAGGC
GATGAGGAGGGAGCTCCTCGCGCGCAAGGAGAAGGAAGTGGAGCTGGCAG
AGCAGTACAACAACCTCAAGGAGGACTGGCTCAAACGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98205:3..440-

>mRNA_M-pyrifera_M_contig98205.22619.1 ID=mRNA_M-pyrifera_M_contig98205.22619.1|Name=mRNA_M-pyrifera_M_contig98205.22619.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig98205:3..440- (Macrocystis pyrifera P11B4 male)
GCCAGCACGGAAGGAGGAGGCAGCCAGCTGGCCGACTCGATCGACACAGA
GCCCCTGCCGTCGAAGGAGGCGATTGTGATTGGCATGGACGACCTGGACA
TGAAGATTAACAAGGCAGAGAGCACCATCGAGAGGCTGAGGAAGGAGAAG
GCCACCGCGCAGACGAGGAAGGACGTGGCCAACATGCCAGCACGGAAGGA
GGAGGCAGCCAGCTGGCCGACTCGATCGACACAGAGCCCCTGCCGTCGAA
GGAGGCGATTGTGATTGGCATGGACGACCTGGACATGAAGATTAACAAGG
CAGAGAGCACCATCGAGAGGCTGAGGAAGGAGAAGGCCACCGCGCAGACG
AGGAAGGACGTGGCCAACATCAGGGGCACGCACAGAGAACTGTCCCACTA
CAACGCCGTCAAGAAGCCCAAGATGCACCACTCTGCCTCTTTCCCTGCCA
CTGTGCCCTCCCATGTTCTCTATCGGCCGAGAATGCTCCAGGCGATGAGG
AGGGAGCTCCTCGCGCGCAAGGAGAAGGAAGTGGAGCTGGCAGAGCAGTA
CAACAACCTCAAGGAGGACTGGCTCAAACGGCAGGGGCACGCACAGAGAA
CTGTCCCACTACAACGCCGTCAAGAAGCCCAAGATGCACCACTCTGCCTC
TTTCCCTGCCACTGTGCCCTCCCATGTTCTCTATCGGCCGAGAATGCTCC
AGGCGATGAGGAGGGAGCTCCTCGCGCGCAAGGAGAAGGAAGTGGAGCTG
GCAGAGCAGTACAACAACCTCAAGGAGGACTGGCTCAAACGG
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