mRNA_M-pyrifera_M_contig9813.22601.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9813.22601.1
Unique NamemRNA_M-pyrifera_M_contig9813.22601.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9813.22601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9813contigM-pyrifera_M_contig9813:4694..5239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size546
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9813.22601.1prot_M-pyrifera_M_contig9813.22601.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9813 4762..5121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.885781-UTR-M-pyrifera_M_contig9813:4693..47611622816898.885781-UTR-M-pyrifera_M_contig9813:4693..4761Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9813 4694..4761 +
1692278243.7818353-UTR-M-pyrifera_M_contig9813:4693..47611692278243.7818353-UTR-M-pyrifera_M_contig9813:4693..4761Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9813 4694..4761 +
1622816898.9154673-UTR-M-pyrifera_M_contig9813:5121..52391622816898.9154673-UTR-M-pyrifera_M_contig9813:5121..5239Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9813 5122..5239 +
1692278243.8089173-UTR-M-pyrifera_M_contig9813:5121..52391692278243.8089173-UTR-M-pyrifera_M_contig9813:5121..5239Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9813 5122..5239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.8990479-CDS-M-pyrifera_M_contig9813:4761..51211622816898.8990479-CDS-M-pyrifera_M_contig9813:4761..5121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9813 4762..5121 +
1692278243.7960176-CDS-M-pyrifera_M_contig9813:4761..51211692278243.7960176-CDS-M-pyrifera_M_contig9813:4761..5121Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9813 4762..5121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9813.22601.1

>prot_M-pyrifera_M_contig9813.22601.1 ID=prot_M-pyrifera_M_contig9813.22601.1|Name=mRNA_M-pyrifera_M_contig9813.22601.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MWILLRGVCTRKTQNKLLSFQHSSKGERAYSGSTVSIVRRVTSFWHNLLP
ACLSATPKNNNAFRRRNAYAGKAPSVCLTGQVLITPTATQREFPASRPVL
EAKRSVARKKTQHNSRPQK*
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mRNA from alignment at M-pyrifera_M_contig9813:4694..5239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9813.22601.1 ID=mRNA_M-pyrifera_M_contig9813.22601.1|Name=mRNA_M-pyrifera_M_contig9813.22601.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig9813:4694..5239+ (Macrocystis pyrifera P11B4 male)
TTTTACGCCGCCATCGAGGGAGCAAATTAATGGCTGTAAATAAAAAACGC
ATTTGAGAATGATCTGCCATGTGGATACTATTGCGCGGTGTTTGCACGCG
GAAAACCCAAAACAAGCTGCTTTCTTTCCAACACTCTTCGAAAGGCGAAC
GGGCATATTCTGGATCTACCGTTTCCATCGTCCGCCGGGTCACATCATTT
TGGCATAATTTATTACCCGCTTGTTTATCTGCGACACCGAAAAACAATAA
CGCGTTCCGCAGACGCAATGCGTATGCCGGTAAAGCGCCAAGTGTGTGCC
TGACAGGGCAGGTACTAATTACTCCTACTGCAACACAAAGAGAATTCCCA
GCAAGTAGGCCTGTGTTGGAAGCAAAGCGCAGCGTTGCTCGAAAGAAGAC
ACAACACAATTCGAGGCCGCAAAAGTGAGCGTCGCTCATATCCGACATGC
ACCTGGTATCATACACTACTCGTACTTAATATCAAGAGTACTTTTCGACG
AAAACCAAAAAAAAAACGTCGATGGCTGATGCTGCGTGCTTCGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9813:4694..5239+

>mRNA_M-pyrifera_M_contig9813.22601.1 ID=mRNA_M-pyrifera_M_contig9813.22601.1|Name=mRNA_M-pyrifera_M_contig9813.22601.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig9813:4694..5239+ (Macrocystis pyrifera P11B4 male)
ATGTGGATACTATTGCGCGGTGTTTGCACGCGGAAAACCCAAAACAAGCT
GCTTTCTTTCCAACACTCTTCGAAAGGCGAACGGGCATATTCTGGATCTA
CCGTTTCCATCGTCCGCCGGGTCACATCATTTTGGCATAATTTATTACCC
GCTTGTTTATCTGCGACACCGAAAAACAATAACGCGTTCCGCAGACGCAA
TGCGTATGCCGGTAAAGCGCCAAGTGTGTGCCTGACAGGGCAGGTACTAA
TTACTCCTACTGCAACACAAAGAGAATTCCCAGCAAGTAGGCCTGTGTTG
GAAGCAAAGCGCAGCGTTGCTCGAAAGAAGACACAACACAATTCGAGGCC
GCAAAAGTGAATGTGGATACTATTGCGCGGTGTTTGCACGCGGAAAACCC
AAAACAAGCTGCTTTCTTTCCAACACTCTTCGAAAGGCGAACGGGCATAT
TCTGGATCTACCGTTTCCATCGTCCGCCGGGTCACATCATTTTGGCATAA
TTTATTACCCGCTTGTTTATCTGCGACACCGAAAAACAATAACGCGTTCC
GCAGACGCAATGCGTATGCCGGTAAAGCGCCAAGTGTGTGCCTGACAGGG
CAGGTACTAATTACTCCTACTGCAACACAAAGAGAATTCCCAGCAAGTAG
GCCTGTGTTGGAAGCAAAGCGCAGCGTTGCTCGAAAGAAGACACAACACA
ATTCGAGGCCGCAAAAGTGA
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