mRNA_M-pyrifera_M_contig98091.22586.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98091.22586.1
Unique NamemRNA_M-pyrifera_M_contig98091.22586.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: A0A5J4XDD3_9CHLO (Hexosyltransferase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDD3_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.620e-8
Identity = 34/111 (30.63%), Postives = 61/111 (54.95%), Query Frame = 1
Query:   25 VRRSWGQRARELGVPIHFFVGRPRGPYCAEVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGL 357
            VR++W   A+  G  + FF   P+     ++L  E  +Y D+V+LP + +SY N+T +T+ + +  A  P   H+     + DD YV +  L+ +LR +P+  ++ VG G+
Sbjct:   14 VRKTWALEAK--GHRVVFFSAVPQNERLFDLLRREAAEYQDVVILPNIHESYFNITHQTLEMCRMAAMDPAVTHL---LKVDDDSYVHMTKLIARLRALPREKIERVGFGV 119          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: A0A6P4YFD6_BRABE (Hexosyltransferase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YFD6_BRABE)

HSP 1 Score: 59.3 bits (142), Expect = 1.160e-7
Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 1
Query:   16 RMRVRRSWGQRARELGVPIH--FFVGRPRGPYCAEVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGLGHLHKNLPPIDREWSKWY 411
            R  +R +WG   R +G  +   F +GR   P     +  E ++YGDIV + + ++SYENLTLKT+  ++W +   + R         DDV+V+   L+  L    Q   +E  + LG +     P+     KWY
Sbjct:   89 RAAIRETWGNATRIMGYKLATLFVIGRTDDPSLQRTIVEEGRRYGDIVQM-DSYESYENLTLKTISALKWTSM--NCRQAKFVMKTDDDVFVNYPRLVRTLADFRQT-AEEKNLMLGCVVSWAFPVRTPGKKWY 218          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: UPI00165AFDE3 (beta-1,3-galactosyltransferase 2 n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=UPI00165AFDE3)

HSP 1 Score: 58.2 bits (139), Expect = 2.800e-7
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 1
Query:    7 AVGRMRVRRSWGQRARELGVPIHFFVGRPRGPYCA---EVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPS---SIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGLGHLHKNLPPIDREWSKWY 411
            A  R  VR +WG  +R+      FF G  +G   +    +L  E QQ+ DI+ L  L DSY+NLT+KT+ ++QW AA     H P+ S    +  D++V+V  L+ +LR  P+      G   G L ++  P     SKW+
Sbjct:   76 AEARQAVRSTWGAPSRDTLTL--FFSGVAQGALLSPLQRLLEKESQQHADIIQLDFL-DSYQNLTIKTVMMMQWLAA-----HCPNASYAMKVDSDIFVNVFHLVQRLRSSPRA-----GFITGSLIRDGRPRRDPSSKWF 203          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: UPI000E45609C (beta-1,3-galactosyltransferase 2-like n=1 Tax=Mastacembelus armatus TaxID=205130 RepID=UPI000E45609C)

HSP 1 Score: 57.4 bits (137), Expect = 5.310e-7
Identity = 45/141 (31.91%), Postives = 71/141 (50.35%), Query Frame = 1
Query:    7 AVGRMRVRRSWGQRARELGVPIHFFVGRPRGPYCA---EVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPS---SIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGLGHLHKNLPPIDREWSKWY 411
            AV R  +RR+WG   ++      FF+G P G   +   E L  E +++ DI+ +    D+Y+NLT+KTM ++ W A      H P+ S    +  D++V+V  L+ QLR  PQ      G   G + ++  P     SKW+
Sbjct:   81 AVAREAIRRTWGAPGQDTLTL--FFLGLPEGGQLSSLQEQLDEEKRKHADIIQM-NFQDTYQNLTIKTMMMMNWVAT-----HCPNASYVMKVDSDIFVNVLYLISQLRSSPQQ-----GFITGSVIRDGRPRRDSHSKWH 208          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: A0A8M9PYN4_DANRE (beta-1,3-galactosyltransferase 2-like n=2 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PYN4_DANRE)

HSP 1 Score: 57.4 bits (137), Expect = 5.390e-7
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 1
Query:    1 KGAVGRMRVRRSWGQRARELGVPI-HFFV-GRPR--GPYCAEVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGLGHLHKNLPPIDREWSKWY 411
            K A  R  +RR+WGQ     GV I H FV G+P    P   E L  E +++GDI+ + +  DSY+NLT+KTM ++ W A   + +       I  D++++V  L+  L G  +   D +    G +  +  P     +KWY
Sbjct:   80 KDAEARTAIRRTWGQDGLVPGVSILHLFVVGQPARSDPVLQEHLQKESKEHGDIIQM-DFVDSYQNLTIKTMMIMNWVAT--YCQSAWYAMKIDADIFLNVHYLVDYLHGQGESRKDYI---TGSVISDAIPHRDSINKWY 214          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: I0YJJ6_COCSC (Hexosyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YJJ6_COCSC)

HSP 1 Score: 57.4 bits (137), Expect = 6.140e-7
Identity = 43/138 (31.16%), Postives = 69/138 (50.00%), Query Frame = 1
Query:    1 KGAVGRMRVRRSWGQRARELGVPIHFFVGRPRGPYCAEVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGLGHLHKNLPPIDRE-WSKWY 411
            K A  R  +R SWG   R   V   FF  +P      + L  E  Q GDIVVLP++++ Y+N+T +T+ +++  +  P + H      + DD YV V+ L+  +  VP+  +      +GH+ +      RE  S+WY
Sbjct:  195 KNADRRAAIRASWGSDRRLHRVM--FFSAKPVDEAVFDELRREAAQKGDIVVLPQIFEHYDNITHQTLEILRAASMDPLATHA---LKVDDDSYVHVDTLMAVMARVPRRRLF-----MGHIDRESGGPHREPSSQWY 322          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: B3GN6_HUMAN (Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase n=27 Tax=Catarrhini TaxID=9526 RepID=B3GN6_HUMAN)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-6
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   25 VRRSWGQRARELGVPIH--FFVGRP------RGPYCAEVLASEFQQYGDIVVLPELW---DSYENLTLKTMHVIQWQAAP-PHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGL--GHLHKNLPPIDREWSKWY 411
            +RR+WGQ     G P+   F +G P      R    AE++A E +++GD++     W   D++ NLTLK +H++ W AA  PH+R + S     DDV+V    ++  L+  P       G  L  G L +   PI   WSK++
Sbjct:  136 IRRTWGQERSYGGRPVRRLFLLGTPGPEDEARAERLAELVALEAREHGDVLQ----WAFADTFLNLTLKHLHLLDWLAARCPHARFLLSGD---DDVFVHTANVVRFLQAQPP------GRHLFSGQLMEGSVPIRDSWSKYF 265          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: Q6ZMB0-3 (Isoform 3 of Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase n=6 Tax=Hominidae TaxID=9604 RepID=Q6ZMB0-3)

HSP 1 Score: 56.6 bits (135), Expect = 1.100e-6
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   25 VRRSWGQRARELGVPIH--FFVGRP------RGPYCAEVLASEFQQYGDIVVLPELW---DSYENLTLKTMHVIQWQAAP-PHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGL--GHLHKNLPPIDREWSKWY 411
            +RR+WGQ     G P+   F +G P      R    AE++A E +++GD++     W   D++ NLTLK +H++ W AA  PH+R + S     DDV+V    ++  L+  P       G  L  G L +   PI   WSK++
Sbjct:  136 IRRTWGQERSYGGRPVRRLFLLGTPGPEDEARAERLAELVALEAREHGDVLQ----WAFADTFLNLTLKHLHLLDWLAARCPHARFLLSGD---DDVFVHTANVVRFLQAQPP------GRHLFSGQLMEGSVPIRDSWSKYF 265          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: A0A8J9SG12_9CHLO (Beta-1,3-galactosyltransferase GALT1 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SG12_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-6
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 1
Query:    1 KGAVGRMRVRRSWGQRARELGVPIHFFVGRPRGPYCAEVLASEFQQYGDIVVLPELWDSYENLTLKTMHVIQWQAAPPHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGLGHLHKNLPPIDRE-WSKWY 411
            K A  R  +R SWG   R   V   FF  +P      + L  E  + GDIVVLP +++ Y+N+T +T+ +++  +  P + H      + DD YV V  L+  +  VPQ  +      LGH+ +      RE  S+W+
Sbjct:  215 KNADRRAAIRESWGSDRRLHRVM--FFSAKPVDEAVFDALRKEAAEKGDIVVLPGIFEHYDNITHQTLEILRAASMDPVATHA---LKVDDDSYVHVNNLMAVMARVPQRRLF-----LGHIDRESGGPHREPSSQWH 342          
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Match: G1S4E6_NOMLE (Hexosyltransferase n=8 Tax=Simiiformes TaxID=314293 RepID=G1S4E6_NOMLE)

HSP 1 Score: 56.2 bits (134), Expect = 1.490e-6
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   25 VRRSWGQRARELGVPIH--FFVGRP------RGPYCAEVLASEFQQYGDIVVLPELW---DSYENLTLKTMHVIQWQAAP-PHSRHIPSPSSIHDDVYVDVEGLLVQLRGVPQVLVDEVGVGL--GHLHKNLPPIDREWSKWY 411
            +RR+WGQ     G P+   F +G P      R    AE++A E +++GD++     W   D++ NLTLK +H++ W AA  PH+R + S     DDV+V    ++  L+  P       G  L  G L +   PI   WSK++
Sbjct:  136 IRRTWGQERSYSGRPVRRLFLLGTPGPEDEERVERLAELVALEAREHGDVLQ----WAFADTFLNLTLKHLHLLDWLAARCPHARFLLSGD---DDVFVHTANVVRFLQAQPP------GRHLFSGQLMEGSVPIRDSWSKYF 265          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98091.22586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4XDD3_9CHLO1.620e-830.63Hexosyltransferase n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A6P4YFD6_BRABE1.160e-730.60Hexosyltransferase n=1 Tax=Branchiostoma belcheri ... [more]
UPI00165AFDE32.800e-734.04beta-1,3-galactosyltransferase 2 n=1 Tax=Fundulus ... [more]
UPI000E45609C5.310e-731.91beta-1,3-galactosyltransferase 2-like n=1 Tax=Mast... [more]
A0A8M9PYN4_DANRE5.390e-732.62beta-1,3-galactosyltransferase 2-like n=2 Tax=Dani... [more]
I0YJJ6_COCSC6.140e-731.16Hexosyltransferase n=1 Tax=Coccomyxa subellipsoide... [more]
B3GN6_HUMAN1.090e-632.87Acetylgalactosaminyl-O-glycosyl-glycoprotein beta-... [more]
Q6ZMB0-31.100e-632.87Isoform 3 of Acetylgalactosaminyl-O-glycosyl-glyco... [more]
A0A8J9SG12_9CHLO1.150e-631.16Beta-1,3-galactosyltransferase GALT1 at C-terminar... [more]
G1S4E6_NOMLE1.490e-632.87Hexosyltransferase n=8 Tax=Simiiformes TaxID=31429... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98091contigM-pyrifera_M_contig98091:10..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.6
Seed ortholog evalue9.7e-09
Seed eggNOG ortholog8081.XP_008415550.1
KEGG koko:K00739,ko:K07820
KEGG ReactionR05909,R06006
KEGG Pathwayko00512,ko00601,ko01100,map00512,map00601,map01100
KEGG ModuleM00056,M00070
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Galactosyltransferase
EggNOG OGs39V5U@33154,3BIHI@33208,3D3UU@33213,48DWQ@7711,499Z8@7742,4A001@7898,KOG2287@1,KOG2287@2759
EC2.4.1.147,2.4.1.86
COG Functional cat.G
CAZyGT31
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Exons2
Model size411
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98091.22586.1prot_M-pyrifera_M_contig98091.22586.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98091 10..549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.1718507-CDS-M-pyrifera_M_contig98091:9..1521622816898.1718507-CDS-M-pyrifera_M_contig98091:9..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98091 10..152 -
1692278243.4035404-CDS-M-pyrifera_M_contig98091:9..1521692278243.4035404-CDS-M-pyrifera_M_contig98091:9..152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98091 10..152 -
1622816898.1887248-CDS-M-pyrifera_M_contig98091:299..5491622816898.1887248-CDS-M-pyrifera_M_contig98091:299..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98091 300..549 -
1692278243.415485-CDS-M-pyrifera_M_contig98091:299..5491692278243.415485-CDS-M-pyrifera_M_contig98091:299..549Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98091 300..549 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.202844-UTR-M-pyrifera_M_contig98091:549..5671622816898.202844-UTR-M-pyrifera_M_contig98091:549..567Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98091 550..567 -
1692278243.4250548-UTR-M-pyrifera_M_contig98091:549..5671692278243.4250548-UTR-M-pyrifera_M_contig98091:549..567Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98091 550..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98091.22586.1

>prot_M-pyrifera_M_contig98091.22586.1 ID=prot_M-pyrifera_M_contig98091.22586.1|Name=mRNA_M-pyrifera_M_contig98091.22586.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MRVRRSWGQRARELGVPIHFFVGRPRGPYCAEVLASEFQQYGDIVVLPEL
WDSYENLTLKTMHVIQWQAAPPHSRHIPSPSSIHDDVYVDVEGLLVQLRG
VPQVLVDEVGVGLGHLHKNLPPIDREWSKWY
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mRNA from alignment at M-pyrifera_M_contig98091:10..567-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98091.22586.1 ID=mRNA_M-pyrifera_M_contig98091.22586.1|Name=mRNA_M-pyrifera_M_contig98091.22586.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig98091:10..567- (Macrocystis pyrifera P11B4 male)
AAAGGGGCAGTGGGGAGGATGAGAGTGAGAAGAAGCTGGGGACAACGTGC AAGGGAACTGGGTGTTCCAATTCACTTCTTTGTCGGAAGACCAAGAGGTC CATATTGTGCTGAAGTGTTAGCTTCTGAATTTCAACAATATGGAGACATA GTTGTTCTCCCAGAGCTGTGGGATTCCTACGAAAATCTCACCTTAAAAAC CATGCATGTCATTCAATGGCAAGCTGCACCTCCTCATTCCCGTCATATCC CTTCACCATCCTCTATTCGTCAAATGGGGGATGACGCAAAGAGGGTGGAG GTGAAGAAGGATGGAGGACACGTCAAATTTGTGAAACATGCTGCATTTTC GCCCCCTTCCACCCCACCTCAACCCCAATCTTCTCCCTCCCCGCCTTTGT TTGTTGGCAAGGTAGATGATGATGTGTATGTGGATGTAGAAGGGTTGCTG GTGCAGTTGCGAGGTGTTCCTCAAGTGCTGGTGGATGAAGTTGGAGTAGG TTTGGGACATTTGCATAAGAATTTGCCTCCAATTGACCGTGAATGGTCCA AGTGGTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98091:10..567-

>mRNA_M-pyrifera_M_contig98091.22586.1 ID=mRNA_M-pyrifera_M_contig98091.22586.1|Name=mRNA_M-pyrifera_M_contig98091.22586.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig98091:10..567- (Macrocystis pyrifera P11B4 male)
ATGAGAGTGAGAAGAAGCTGGGGACAACGTGCAAGGGAACTGGGTGTTCC
AATTCACTTCTTTGTCGGAAGACCAAGAGGTCCATATTGTGCTGAAGTGT
TAGCTTCTGAATTTCAACAATATGGAGACATAGTTGTTCTCCCAGAGCTG
TGGGATTCCTACGAAAATCTCACCTTAAAAACCATGCATGTCATTCAATG
GCAAGCTGCACCTCCTCATTCCCGTCATATCCCTTCACCATCCTCTATTC
ATGAGAGTGAGAAGAAGCTGGGGACAACGTGCAAGGGAACTGGGTGTTCC
AATTCACTTCTTTGTCGGAAGACCAAGAGGTCCATATTGTGCTGAAGTGT
TAGCTTCTGAATTTCAACAATATGGAGACATAGTTGTTCTCCCAGAGCTG
TGGGATTCCTACGAAAATCTCACCTTAAAAACCATGCATGTCATTCAATG
GCAAGCTGCACCTCCTCATTCCCGTCATATCCCTTCACCATCCTCTATTC
ATGATGATGTGTATGTGGATGTAGAAGGGTTGCTGGTGCAGTTGCGAGGT
GTTCCTCAAGTGCTGGTGGATGAAGTTGGAGTAGGTTTGGGACATTTGCA
TAAGAATTTGCCTCCAATTGACCGTGAATGGTCCAAGTGGTATATGATGA
TGTGTATGTGGATGTAGAAGGGTTGCTGGTGCAGTTGCGAGGTGTTCCTC
AAGTGCTGGTGGATGAAGTTGGAGTAGGTTTGGGACATTTGCATAAGAAT
TTGCCTCCAATTGACCGTGAATGGTCCAAGTGGTAT
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