mRNA_M-pyrifera_M_contig98077.22582.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98077.22582.1
Unique NamemRNA_M-pyrifera_M_contig98077.22582.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98077.22582.1 vs. uniprot
Match: A0A2P6QU96_ROSCH (Uncharacterized protein n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QU96_ROSCH)

HSP 1 Score: 50.1 bits (118), Expect = 7.020e-5
Identity = 27/93 (29.03%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:   16 DRALSEQHLMMRGVAVAGSTLDIFSRRVRVRFEELDAWHTDTQQRLEVTLANVDMNLERLGTVRLHPALQHSSRETLPDCLPAARRRELAASC 294
            +R L EQ +  R V VA   LD + R +   + E    ++   +     L N+  ++E+L +++LHPALQ ++R+ L D +     R++  +C
Sbjct:  161 ERLLREQKVQQRAVEVAKGNLDQYYRMINQNYTEFMKRYSQQHRIHSDLLVNLGRDVEKLRSIKLHPALQTANRKCLSDFVKDENLRKVGENC 253
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98077.22582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P6QU96_ROSCH7.020e-529.03Uncharacterized protein n=2 Tax=Rosoideae TaxID=17... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98077contigM-pyrifera_M_contig98077:1..294 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog67593.Physo130177
KEGG koko:K08330
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04139,map04136,map04138,map04139
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0001932,GO:0001934,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005776,GO:0005911,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0009506,GO:0009893,GO:0009987,GO:0010150,GO:0010562,GO:0010604,GO:0015980,GO:0016020,GO:0016043,GO:0016052,GO:0016236,GO:0019220,GO:0019222,GO:0019899,GO:0019900,GO:0019901,GO:0022411,GO:0022607,GO:0030054,GO:0030242,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032947,GO:0032991,GO:0034045,GO:0042325,GO:0042327,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044424,GO:0044444,GO:0044464,GO:0045937,GO:0046983,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0055044,GO:0055114,GO:0060255,GO:0061695,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090693,GO:0098805,GO:0099402,GO:1901575,GO:1902494,GO:1902554,GO:1902911,GO:1903008,GO:1905037,GO:1990234,GO:1990316
EggNOG free text desc.Autophagy-related protein 11
EggNOG OGs28MXS@1,2QUG9@2759,3Q9A6@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816898.0197778-CDS-M-pyrifera_M_contig98077:0..2941622816898.0197778-CDS-M-pyrifera_M_contig98077:0..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98077 1..294 -
1692278243.3322058-CDS-M-pyrifera_M_contig98077:0..2941692278243.3322058-CDS-M-pyrifera_M_contig98077:0..294Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98077 1..294 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98077.22582.1prot_M-pyrifera_M_contig98077.22582.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98077 1..294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98077.22582.1

>prot_M-pyrifera_M_contig98077.22582.1 ID=prot_M-pyrifera_M_contig98077.22582.1|Name=mRNA_M-pyrifera_M_contig98077.22582.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MLTSADRALSEQHLMMRGVAVAGSTLDIFSRRVRVRFEELDAWHTDTQQR
LEVTLANVDMNLERLGTVRLHPALQHSSRETLPDCLPAARRRELAASC
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mRNA from alignment at M-pyrifera_M_contig98077:1..294-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98077.22582.1 ID=mRNA_M-pyrifera_M_contig98077.22582.1|Name=mRNA_M-pyrifera_M_contig98077.22582.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig98077:1..294- (Macrocystis pyrifera P11B4 male)
ATGCTGACTTCCGCAGACCGCGCGCTGTCGGAGCAGCACCTCATGATGAG
AGGAGTTGCGGTAGCCGGCTCCACGCTGGACATTTTTTCTCGACGCGTGC
GTGTGCGCTTCGAAGAGTTGGACGCGTGGCACACAGACACACAGCAGCGC
CTGGAGGTAACGCTGGCCAACGTGGACATGAACCTGGAGCGGCTGGGGAC
TGTGCGCTTGCACCCAGCGCTGCAGCACTCCTCAAGGGAGACGCTGCCCG
ACTGTCTCCCTGCCGCGCGGCGGCGTGAGTTGGCGGCCAGCTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98077:1..294-

>mRNA_M-pyrifera_M_contig98077.22582.1 ID=mRNA_M-pyrifera_M_contig98077.22582.1|Name=mRNA_M-pyrifera_M_contig98077.22582.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig98077:1..294- (Macrocystis pyrifera P11B4 male)
ATGCTGACTTCCGCAGACCGCGCGCTGTCGGAGCAGCACCTCATGATGAG
AGGAGTTGCGGTAGCCGGCTCCACGCTGGACATTTTTTCTCGACGCGTGC
GTGTGCGCTTCGAAGAGTTGGACGCGTGGCACACAGACACACAGCAGCGC
CTGGAGGTAACGCTGGCCAACGTGGACATGAACCTGGAGCGGCTGGGGAC
TGTGCGCTTGCACCCAGCGCTGCAGCACTCCTCAAGGGAGACGCTGCCCG
ACTGTCTCCCTGCCGCGCGGCGGCGTGAGTTGGCGGCCAGCTGCATGCTG
ACTTCCGCAGACCGCGCGCTGTCGGAGCAGCACCTCATGATGAGAGGAGT
TGCGGTAGCCGGCTCCACGCTGGACATTTTTTCTCGACGCGTGCGTGTGC
GCTTCGAAGAGTTGGACGCGTGGCACACAGACACACAGCAGCGCCTGGAG
GTAACGCTGGCCAACGTGGACATGAACCTGGAGCGGCTGGGGACTGTGCG
CTTGCACCCAGCGCTGCAGCACTCCTCAAGGGAGACGCTGCCCGACTGTC
TCCCTGCCGCGCGGCGGCGTGAGTTGGCGGCCAGCTGC
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