mRNA_M-pyrifera_M_contig98060.22577.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98060.22577.1
Unique NamemRNA_M-pyrifera_M_contig98060.22577.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98060.22577.1 vs. uniprot
Match: UPI001A027B9E (Sulfotransferase family 2 domain-containing protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI001A027B9E)

HSP 1 Score: 51.6 bits (122), Expect = 6.380e-6
Identity = 21/79 (26.58%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    4 QCRWLCDENGQNLADDLLRYEALDSDWARFSTKHGFQCALQHLNASSGRSDSRKHYSKQTRDLIFEYYRDDFDAYGYPY 240
            Q  ++ DE G  + D + R+E L  D+ +     G   +L   N +  R     +Y+++T++L+++Y+++D D +GY +
Sbjct:  132 QKEFVTDEQGNLIVDYIGRFEQLGEDFEKICHLIGLDVSLPQFNKTKNRKPYTDYYNERTKNLVYDYFKEDIDYFGYQF 210
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BLAST of mRNA_M-pyrifera_M_contig98060.22577.1 vs. uniprot
Match: A0A0D7W6G5_9FLAO (Uncharacterized protein n=1 Tax=Tamlana nanhaiensis TaxID=1382798 RepID=A0A0D7W6G5_9FLAO)

HSP 1 Score: 49.7 bits (117), Expect = 3.880e-5
Identity = 25/79 (31.65%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:    4 QCRWLCDENGQNLADDLLRYEALDSDWARFSTKHGFQCALQHLNASSGRSDSRKHYSKQTRDLIFEYYRDDFDAYGYPY 240
            Q  ++CDEN   L D + R E L+S+  +   K G     ++   S+ +  S K+Y+K+T++++++YY+ DF+ + Y Y
Sbjct:  127 QYEFICDENLNFLVDKIGRQENLNSEANKIFKKLGLVFNKKYAKRSNNKHFS-KYYTKETQEIVYDYYKLDFELFDYNY 204
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98060.22577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001A027B9E6.380e-626.58Sulfotransferase family 2 domain-containing protei... [more]
A0A0D7W6G5_9FLAO3.880e-531.65Uncharacterized protein n=1 Tax=Tamlana nanhaiensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98060contigM-pyrifera_M_contig98060:454..696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.8079746-CDS-M-pyrifera_M_contig98060:453..6961622816897.8079746-CDS-M-pyrifera_M_contig98060:453..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98060 454..696 -
1692278243.234558-CDS-M-pyrifera_M_contig98060:453..6961692278243.234558-CDS-M-pyrifera_M_contig98060:453..696Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98060 454..696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98060.22577.1prot_M-pyrifera_M_contig98060.22577.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98060 454..696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98060.22577.1

>prot_M-pyrifera_M_contig98060.22577.1 ID=prot_M-pyrifera_M_contig98060.22577.1|Name=mRNA_M-pyrifera_M_contig98060.22577.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=81bp
SQCRWLCDENGQNLADDLLRYEALDSDWARFSTKHGFQCALQHLNASSGR
SDSRKHYSKQTRDLIFEYYRDDFDAYGYPY*
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mRNA from alignment at M-pyrifera_M_contig98060:454..696-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98060.22577.1 ID=mRNA_M-pyrifera_M_contig98060.22577.1|Name=mRNA_M-pyrifera_M_contig98060.22577.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=243bp|location=Sequence derived from alignment at M-pyrifera_M_contig98060:454..696- (Macrocystis pyrifera P11B4 male)
TCGCAATGCCGCTGGCTTTGTGACGAGAATGGCCAAAATCTGGCCGATGA
TTTGCTGCGGTACGAAGCCCTGGACTCCGATTGGGCGCGGTTTTCGACTA
AACACGGGTTTCAATGTGCTCTTCAGCACCTCAATGCGTCATCGGGACGC
TCGGATTCCCGAAAACACTACAGCAAGCAGACACGCGATCTGATTTTCGA
ATATTATCGAGACGATTTCGATGCCTATGGCTATCCGTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98060:454..696-

>mRNA_M-pyrifera_M_contig98060.22577.1 ID=mRNA_M-pyrifera_M_contig98060.22577.1|Name=mRNA_M-pyrifera_M_contig98060.22577.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig98060:454..696- (Macrocystis pyrifera P11B4 male)
TCGCAATGCCGCTGGCTTTGTGACGAGAATGGCCAAAATCTGGCCGATGA
TTTGCTGCGGTACGAAGCCCTGGACTCCGATTGGGCGCGGTTTTCGACTA
AACACGGGTTTCAATGTGCTCTTCAGCACCTCAATGCGTCATCGGGACGC
TCGGATTCCCGAAAACACTACAGCAAGCAGACACGCGATCTGATTTTCGA
ATATTATCGAGACGATTTCGATGCCTATGGCTATCCGTACTGATCGCAAT
GCCGCTGGCTTTGTGACGAGAATGGCCAAAATCTGGCCGATGATTTGCTG
CGGTACGAAGCCCTGGACTCCGATTGGGCGCGGTTTTCGACTAAACACGG
GTTTCAATGTGCTCTTCAGCACCTCAATGCGTCATCGGGACGCTCGGATT
CCCGAAAACACTACAGCAAGCAGACACGCGATCTGATTTTCGAATATTAT
CGAGACGATTTCGATGCCTATGGCTATCCGTACTGA
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