|
Homology
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI) HSP 1 Score: 333 bits (854), Expect = 1.590e-112 Identity = 216/250 (86.40%), Postives = 223/250 (89.20%), Query Frame = 1
Query: 4 VAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGEWMWSYPDXXXXXXXXXXXXXXXXXXXXXEAE-DTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGG-GASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWWE 747
VAP FSGD+LDV+TAQIEAKFADRVIANVGLCI LHSYESIGDPYVYPSDGAAHYKVRFR+LVFRPFVGEIL GKV+SCT+ GIKVSLDFFE+ASIPKDLLQSPSVF RGEWMWS XXXXXXXXXXXXXXXXXXXXX E D +FSL LHDEVRFRVRTLEFTQVTSTATG LQATTVSTARG G XXXXXXXXXXXXXX VRERGTSVDLT VEEAPSAMTITGSMNEEGLGLLSWWE
Sbjct: 30 VAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGEWMWSXXXXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWWE 279
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA) HSP 1 Score: 205 bits (521), Expect = 1.630e-62 Identity = 122/251 (48.61%), Postives = 161/251 (64.14%), Query Frame = 1
Query: 1 QVAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTA-RGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
+V P +F +LDV+T ++ K++++VI NVGL I LHS+ES+GD VYPSDG+AHY+ FRLL+FRPFVGE+L GK+ C+E GI VS+ FFE +IPK LL PSV+ + W+W Y D D ++ + + DE+RFRVRTL+FT+V +TA G QATTVST +GGG XXXXXXXX R +R TS+D+T+ EAP M+IT S+NE+GLGL SWW
Sbjct: 12 KVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP--------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGR--QRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 245
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC) HSP 1 Score: 180 bits (456), Expect = 4.850e-53 Identity = 100/250 (40.00%), Postives = 142/250 (56.80%), Query Frame = 1
Query: 1 QVAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
Q+AP F D V+T +I+ K+A++VIA+VGLCI+L+ + IGD Y++PSDG +H +V FR++VF+PF+GE+L GK+ SCTE I+VS+DF + IP +Q+PS F + E W W +P E E + + LH+EVRFRV + FT+VT TA G +QAT A + R R +SVDL+ + PSAM I G+++E+GLGL SWW
Sbjct: 12 QIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTEVVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEWKFPGK--------------------EDEQDPYYMYLHEEVRFRVTNINFTRVTKTAKG-IQATVTEAADSASS-----------------------RRRSSSVDLSEHDPKPSAMQIIGTIDEDGLGLSSWW 217
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD) HSP 1 Score: 172 bits (437), Expect = 3.760e-50 Identity = 96/249 (38.55%), Postives = 139/249 (55.82%), Query Frame = 1
Query: 4 VAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
V P F D V+ +I+ K+A++VIA+VGLCI+++ + IGD +V+PSDG +H +V FR++VFRPFVGE+L G++ SCTE I+VS+DF + IP LQ+PS F E W+W Y + F + +H+E+RFRV + FT+VT TA G +QATT + + S R R +SVDL+ + PSA+ I G+++E+GLGL SWW
Sbjct: 13 VNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSEG-----------------------QEKFYMDMHEEIRFRVTNINFTRVTKTANG-IQATTTEASDKAASEGQ-----------------SLARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 220
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A7S2XZU7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZU7_9STRA) HSP 1 Score: 171 bits (433), Expect = 5.510e-50 Identity = 100/212 (47.17%), Postives = 127/212 (59.91%), Query Frame = 1
Query: 118 YESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWWE 747
+ESIGD Y+YP DG+AHYKV FRLLVFRPFVGE++ GK++S + G+KV+L F E IP LLQ+PS F E W+W Y + ++ED F + +E+RFRVR+L FTQV +TA G L ATTVST+ G A R+R R +SVDL +EAPSAM I GS+NE+GLGLLSWW+
Sbjct: 2 FESIGDAYIYPLDGSAHYKVTFRLLVFRPFVGELIIGKISSQSAEGLKVTLGFTEDVFIPSYLLQAPSEFDANEQVWVWKYSE---------------------DSED--FVMDTGEEIRFRVRSLNFTQVQATAKGLL-ATTVSTSSGTTAEKQQSQPAGGSQHTQKASEPMRLRRRSSSVDLADPQEAPSAMQILGSINEDGLGLLSWWQ 189
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL) HSP 1 Score: 172 bits (436), Expect = 6.350e-50 Identity = 97/249 (38.96%), Postives = 138/249 (55.42%), Query Frame = 1
Query: 4 VAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
VAP F D V+ +I+ K+A++VIA+VGLCIS++ + IGD +V+PSDG +H +V FR++VFRPFVGE+L G++ SC E I+VS+DF + IP +Q+PS F E W+W Y + F + LH+E+RFRV ++ FT+VT TA G +QATT + S R R SVDL+ + PSA+ I G+++E+GLGL SWW
Sbjct: 13 VAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVWKYSEG-----------------------QEKFFMDLHEEIRFRVTSINFTRVTKTAHG-IQATTTEAS----------DKTTDAAPNAGDMRQSLARGRSASVDLSDTDPTPSAIHILGTIDEDGLGLSSWW 227
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A6G0XPV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV7_9STRA) HSP 1 Score: 170 bits (431), Expect = 3.290e-49 Identity = 97/250 (38.80%), Postives = 142/250 (56.80%), Query Frame = 1
Query: 1 QVAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
QVAP F+ D V+ +I+ K+A++VIA+VGLCI+ + + IGD Y++PSDG +H +V FR++VFRPF+GEIL GK+ SCTE I+VS+DF + IP +Q+PS F + E W W +P E +D + + L++E+RFRV + FT+V TATG +QA T + + R R +SVDL+ + PSA+ I G+++E+GLGL SWW
Sbjct: 12 QVAPEFFAADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYIHPSDGTSHTEVIFRMVVFRPFIGEILKGKIISCTEEHIRVSMDFVQDIIIPSYAMQNPSFFDKTERLWEWKFPGRE-------------------EGQDPYY-MYLNEEIRFRVTNINFTRVLKTATG-IQAVTETA------------------DTIPDKRENPTRRRSSSVDLSETDPKPSALQIVGTIDEDGLGLSSWW 222
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA) HSP 1 Score: 170 bits (430), Expect = 4.130e-49 Identity = 103/250 (41.20%), Postives = 145/250 (58.00%), Query Frame = 1
Query: 1 QVAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTR--GEWMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
+ AP F D+ +V+ QIE K+A+RV+ +VGLCI+ + + SIGDPY+YPS+G+A VRFR++VFRPFVGEI+ G++ S G+K+S +FFE IP LLQ+P V+ G W W Y + + F + + +EVRF+VRTL FTQ++S+ G TT T G XXXXXXX +R R +S+ L+ +E P+ M I G+MN+ GLGL+SWW
Sbjct: 5 KTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSAIQIVRFRMVVFRPFVGEIITGRLVSSGREGLKISTEFFEDILIPAALLQAPCVYNPVDGLWTWKYGEP-----------------------ENDFLMDIGEEVRFKVRTLTFTQLSSSVKGLTATTTSETGNDAGXXXXXXXXXPGPA----------LRRRSSSMGLSPDDEIPAVMQIIGAMNDFGLGLISWW 221
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA) HSP 1 Score: 167 bits (424), Expect = 3.710e-48 Identity = 93/250 (37.20%), Postives = 137/250 (54.80%), Query Frame = 1
Query: 1 QVAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
QVAP FS D V+ +I+ K+A++VIA+VGLCI+ + + IGD YV+PSDG +H V FR++VFRPF+GEIL GK+ +CTE I+VS++F + IP +Q+PS F + E W W +P E + + + L++EVRFRV + FT+V TA G T + + + R R +SVDL+ + P+A+ I G+++E+GLGL SWW
Sbjct: 12 QVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTDVIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEWKFPGR--------------------EDDQDPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADTK-------------------PDKSENPTRRRSSSVDLSDTDPKPAALQIIGTIDEDGLGLSSWW 222
BLAST of mRNA_M-pyrifera_M_contig9801.22571.1 vs. uniprot
Match: A0A024GIJ1_9STRA (Uncharacterized protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GIJ1_9STRA) HSP 1 Score: 162 bits (410), Expect = 5.300e-46 Identity = 93/249 (37.35%), Postives = 140/249 (56.22%), Query Frame = 1
Query: 4 VAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYPSDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPKDLLQSPSVFTRGE--WMWSYPDXXXXXXXXXXXXXXXXXXXXXEAEDTAFSLALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASXXXXXXXXXXXXXXXXXXXSRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWW 744
+ P F GD V+ +I+ K+ ++VIA+VGLCIS++ + +IGD ++PS+G +H +V FR++VFRPF+GE+L GK+ SC E+ I+++++F + IP LQ+PS F E W+W++ D AE F + L++E+RFRV + FTQV TA G T+ ST + AS R R +SVDL+ + PSAM I G+++E+GLGL SWW
Sbjct: 13 IHPMLFDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFTD---------------------SAEK--FHMDLNEEIRFRVTNVNFTQVHKTAKGMQATTSESTEKKDKASLKRGNLDDK-------------RRRLSSVDLSDSDPTPSAMQILGTIDEDGLGLTSWW 225
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 333.6 |
Seed ortholog evalue | 8.1e-89 |
Seed eggNOG ortholog | 2880.D7FSQ2 |
Preferred name | POLR3H |
KEGG rclass | RC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273,RC02795 |
KEGG ko | ko:K00121,ko:K03022 |
KEGG Reaction | R00435,R00441,R00442,R00443,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310 |
KEGG Pathway | ko00010,ko00071,ko00230,ko00240,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko03020,ko04623,ko05169,ko05204,map00010,map00071,map00230,map00240,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map03020,map04623,map05169,map05204 |
KEGG Module | M00181 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 |
EggNOG free text desc. | transcription initiation from RNA polymerase III promoter |
EggNOG OGs | COG1095@1,KOG3297@2759 |
Ec32 ortholog description | RNA polymerase Rpb7, N-terminal |
Ec32 ortholog | Ec-03_002970.1 |
EC | 1.1.1.1,1.1.1.284 |
COG Functional cat. | K |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | br01611,ko00000,ko00001,ko00002,ko01000,ko03021 |
Exons | 6 |
Model size | 750 |
Cds size | 750 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816897.4670875-CDS-M-pyrifera_M_contig9801:2317..2429 | 1622816897.4670875-CDS-M-pyrifera_M_contig9801:2317..2429 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 2318..2429 - |
1692278243.0130339-CDS-M-pyrifera_M_contig9801:2317..2429 | 1692278243.0130339-CDS-M-pyrifera_M_contig9801:2317..2429 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 2318..2429 - |
1622816897.4796233-CDS-M-pyrifera_M_contig9801:3321..3458 | 1622816897.4796233-CDS-M-pyrifera_M_contig9801:3321..3458 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 3322..3458 - |
1692278243.027819-CDS-M-pyrifera_M_contig9801:3321..3458 | 1692278243.027819-CDS-M-pyrifera_M_contig9801:3321..3458 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 3322..3458 - |
1622816897.4907978-CDS-M-pyrifera_M_contig9801:5573..5748 | 1622816897.4907978-CDS-M-pyrifera_M_contig9801:5573..5748 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 5574..5748 - |
1692278243.0380762-CDS-M-pyrifera_M_contig9801:5573..5748 | 1692278243.0380762-CDS-M-pyrifera_M_contig9801:5573..5748 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 5574..5748 - |
1622816897.504974-CDS-M-pyrifera_M_contig9801:8092..8157 | 1622816897.504974-CDS-M-pyrifera_M_contig9801:8092..8157 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 8093..8157 - |
1692278243.0480866-CDS-M-pyrifera_M_contig9801:8092..8157 | 1692278243.0480866-CDS-M-pyrifera_M_contig9801:8092..8157 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 8093..8157 - |
1622816897.5196042-CDS-M-pyrifera_M_contig9801:8859..8946 | 1622816897.5196042-CDS-M-pyrifera_M_contig9801:8859..8946 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 8860..8946 - |
1692278243.0644178-CDS-M-pyrifera_M_contig9801:8859..8946 | 1692278243.0644178-CDS-M-pyrifera_M_contig9801:8859..8946 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 8860..8946 - |
1622816897.5340943-CDS-M-pyrifera_M_contig9801:9527..9701 | 1622816897.5340943-CDS-M-pyrifera_M_contig9801:9527..9701 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 9528..9701 - |
1692278243.0730424-CDS-M-pyrifera_M_contig9801:9527..9701 | 1692278243.0730424-CDS-M-pyrifera_M_contig9801:9527..9701 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig9801 9528..9701 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig9801.22571.1 >prot_M-pyrifera_M_contig9801.22571.1 ID=prot_M-pyrifera_M_contig9801.22571.1|Name=mRNA_M-pyrifera_M_contig9801.22571.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=250bp
QVAPGTFSGDSLDVITAQIEAKFADRVIANVGLCISLHSYESIGDPYVYP SDGAAHYKVRFRLLVFRPFVGEILAGKVTSCTEHGIKVSLDFFEHASIPK DLLQSPSVFTRGEWMWSYPDPDAEDGEDGDGGTGGGEGEGSEAEDTAFSL ALHDEVRFRVRTLEFTQVTSTATGRLQATTVSTARGGGASGAVAGGAGGG AAGEGGAGASRVRERGTSVDLTSVEEAPSAMTITGSMNEEGLGLLSWWE* back to topmRNA from alignment at M-pyrifera_M_contig9801:2318..9701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig9801.22571.1 ID=mRNA_M-pyrifera_M_contig9801.22571.1|Name=mRNA_M-pyrifera_M_contig9801.22571.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7384bp|location=Sequence derived from alignment at M-pyrifera_M_contig9801:2318..9701- (Macrocystis pyrifera P11B4 male) CAGGTCGCTCCAGGTACGTTCAGCGGCGATTCTCTCGACGTGATCACGGC
ACAGATAGAGGCCAAGTTTGCAGACAGGGTGATCGCCAACGTTGGCCTAT
GCATAAGTCTGCACAGCTACGAGAGCATCGGAGACCCCTACGTTTACCCC
TCGGACGGTGCTGCACACTACAAGGTAATCATTCATAGCCTGGCCGCCGG
TCAGTGCCGGGCATTGGTTTTAGGCGGACGCTTCCCGCAGTCTCTCTGTT
TATGCTGCAGTTCGCGAGTGAGGTCACCACCACAACGGCGACCATGGTGT
CGTCATTCATGCTGCGCCATAGTCGTGTGTCTCCTTTCACTGTGGCGGTC
CGGTTACTAAAAAACCGCTTCGGAGCCGGATTTCATTTTTTGAAGTCATA
TGGTGTGTGTAGAGCTGGTGCCAGGTTTTATTTACGCCCTGACTTGATCG
GTTGGTTGGTTGATGGGTTGATTGGTTGGTTGATCGATGGGTTGGTTGGT
TGATTGTTGGTGAGAATAGCAATAGGGTTTAATTGAAACACCACAGGGGG
GATGATCGGACCGAAATAAAGTACTGCTGCAGGCACAAATATCCCAATTG
TGTATATGATGAGCCAACGTTGATGCAATCGTCGTTTTTACCGGTCCATT
TTTTCCCCCTATACTATAATCAAGTGTAATCAAGTCTCACAACACTGCAT
TTGCTCTACTCTCATATATTAATAATAATTACTATTTTTGACTTTTGTCC
GCCAGGTGCGGTTTCGCCTACTGGTGTTTCGGCCGTTCGTGGGCGAGATA
CTTGCTGGGAAGGTGACCTCTTGCACCGAGCATGGGATCAAGGTGCGCAA
TAGCCCTATGATAGTATAGGATACTTGTATCTGCCGTCAACTTGTGTGCG
TTGATGATCGAGCAAACCAATCGCCGGCCCCCGTTTCTTTCTTGTGGGAC
CTTGACAGCGGACGGCGGACGATTCAGGCTAGTCGAAACGGGCCATTTTT
TTCGTCTGGAGCCGTCGCAATCATTACGTGACGCGCACATCCTACTCACG
TGCGTAGAGTGCTTTGTTGCAGCAGCGAAAGTAACAGGTGTGCTGCAGCT
GTGTTGCGCGCAGCAGGTGCTCGGTTGTTTCTCTAGATGCCCTGGGTTAT
TCGCTCGCCAAACTACCTTATCCTTTTTTTACGTGCGTGGCGTGTTGGTT
GCAGCAGCAGCAGCAGCAGCGGCAAATGTATCCAGTATTGTTACGGCAGT
AGTTCATGCGCCGGACGTTTTGGTTGTTCCTTTAGATGCGCTAAGTAATA
TGTCTGTCTCAGCGGTGCCTAACGAATGCCTGGCTGGTTAAGAGTATTGA
ATTTTAATGGTCACTTGACCCCTCCCGGATGTTGCCGACAAACGGCCTTA
GCACGTCGTTTCTCTTAACATTGAACCCATCGGCCCTTCGTCGTGAGGAG
CGAACCGCGGGGCGGGAACGTGGTTCACGTGCGTGCTCTTCTCTCAAAAT
GCGAATGATCCCCCTTGCCGCTGTGCCATCCTTCGTTGGGGCAGGTTTCG
CTGGACTTCTTCGAGCACGCCTCCATACCCAAGGACCTCCTGCAGTCGCC
GTCTGTATTGTGAGTGTTATCACTAGTCGTGTTTTGTCCCCCTTCTCTGT
TCCTGTGCTTCTTTCGCGACACCTGTGTGCCTGTGAAGCTACCGTATAAC
GTTATCACCCTGGGTGATAAGATAACACACCCCCTCGGACGAACTTCTAA
GCTGGTTTTCTCGACGAGACGACGGCGAGAGAGTAAACGCCGAGCGACGC
ATCGATGGAAAGATCTCAAAAGATGAGATATTTCCAAGGCCACCGTTTTG
ACTGTGTGTATCTCCCATGGTTTGGAGAAAGTCGGCTCGGAAACGCATCC
CTCGGTGTGTGTTTGTTTATCACTGTAGTGTGATAGTGTCATCGTGCCAT
TCGGTATATCGCGCTCTCGTCCTTACACAGCGGTGGCATGGCCGGCGAAC
GGCGAACTAGCTCAAGGTATCAAGCAATCATCGCTCGCCGCGGTCGTCTC
TGTCTAGAGATAGGTACAAAGCAGAGTGTACCACTCCCCCCTCCAGTTTT
CGCACGGCGGGGTTAATGCGCAAGACGAATCAGACACGCCAGAACGGCCC
CCACAATGTATCAGAGCGTGCCATGCGTCTTCTGCTTTTAATTGGTCGGG
TAACTGGCAGTCATCCCGGGACTCCGACCGGCTTCGTTTCGGCTTAGTTT
CTTGCCAAGTATCTGTGGACTCACTTTGCCTTGGGTGACCACCTGCGAGA
TCATGCCTTCAAGCTATTTATAATGTAATGCTCGAAACACACTAACTGTA
GCTTGGGCTGGCTCGAGTGCATGTGTAACTCCTCGTTCGACACTAAACTG
TTCTGGGCCTGGCAGCGAGGCTTCAGGGCGCTCTCGCCTGCTGGGGTGGC
CTTATGCTGTATGCGATATATGAGTCGAGTTGTTTCTGTTCCCACTGTTG
CCCCGTTACCACTCGCGACGCTCGCGCCTGGTACGACGACCAGTAGGTAG
CCCCTGCGAAGGGAAAACGGTGTACCAGTAGAACGGATCTCAATTTTTTT
GCGCGCCATTTTTTGCCCATTATTGACTACCAGCCCGGGGATCAGTACCA
GCTCGAATCAGGGGCGTTGGCTCATGTGAGGGACTTCCAATACCGCACGC
GCTGCGAGGGTCCCTTCAAGAGGGCTACCTACTGCTCTGTGCGCATAAAA
GCGCGCCAGCTAGCGTAGCGTAGCGTTTTTACCTCGGGTTTGTTGTTGCG
ACGCGTCGCCGCCGACACCCGCAGCGGCCCTCTGCAAATGCTTTATACAC
GTGCTATTTCAGCTGCGGGTTCAGCTTGCTGTACTGATAGGGGGGCGTTC
TGATGGAATACCTCTTGTCTCGGAAGTCTCTTGATTTTGTCCTGGGGAAT
TGTTTTTCCTAGAAATAAGATAGCGACGCAAGCGTTCCTTTGCCATCTGT
CGAGTTTTTTTAGTTGGGACAAGTTTCCTGTTTGTCCTGTTTTTCCTCGG
GGGGGTTGCCCAAGAGAAGGAGGAGAATGAGCCGAAATAATACTCGGCAA
TAGCGGCCCAAGAACAGCAGCTTCATTTGGACTCTACCCGATTTTCTGGT
CCCGTGGTTGTACGTCGACGGGTTAAATTGGCACACACGACACCTTCTGT
ATACCCGGTGTGTGGGAAGTGTGGTGAACTTAAGCCAGCGTAGCGTTAAT
ATGGTAAAAGCCTATCTAATCCGTCGGAGGACCTTGAAAAGAAAAAAGGT
GTACGTACAGCACTTACAAGGCAGATCAGATAGCTTTTTTTTTTCGTTTT
GTTCATCCCATGTATTATTTTCGCCCTTCTTTTCTCTCTCCCTCCTACAG
GTATCAATAGTCGTGAGTCAGATCCGAGGTCACAAAGTGTGATAGACTCT
CCTCCCCTCTCCCCACTACGATTCTTGCCTTGGCAGGCATTTTTATCGCG
ACAATAATTCAGCATTTTTTCCGTCCCTCATCGACTGGCGTTGGATAAAT
AAAACCCATATAGACGCGTTGTACGATAGAGGTAGCACATTTCCGTTAAA
ACGTTTTCTGAATGACGGGGTTCCTTAACCCGAAATCGTCGGAATGTCAA
TATTGTTTCGAAAAATAACTTTTTTGTATATTTGGGCCATGGGATTATTT
ATCGGGATGCGATTTGATTTTTGCTGGGAGCCTGTTTTCGGGCGAGGTAT
GGAGCTCCTTAAGGTCATGAGGAGCCTCAGAAAAAAATAGGGTGAACCCC
TATCGTGGAACGCCTCTATATACGTAGATACTCACCAGTAAAAACTGTGA
AAACGGCCCTATAGTAAGCGAGCTCCCAGAACTCAAAACAAAATGTGGAA
ACTACCATACGGTAAGCGAGCTCCGTAACCCCTCTCTTCGACCCGGCGAG
CAGCACTCGAGGGGAGTGGATGTGGTCTTATCCCGACCCAGATGCAGAGG
ACGGAGAAGACGGTGACGGGGGCACGGGGGGCGGTGAGGGGGAAGGGAGT
GAGGCGGAGGACACTGCCTTTTCGCTGGCTTTGCACGACGAAGTGCGGTT
TCGAGTGCGGACGCTGGAGTTCACGCAGGTGGGGTTGGGGTGGGATGTTT
TTTCGCGTTCACGACTGCTTCTTGTTTGATGCAGAACATACTTACTTTTC
AGTGTTGACGTTGACTCCGATATTACCATGGAATGTTGCTGTTAATACTC
CTGTCATTCGATAAATTGACACAAATATGAAACATGGCATTGATTGGCAG
CATGGGACCTGTTGAATTCATACCGTAGAAAATGATGTTTTTTTTTGTTT
CAGAGCGAAGTATTTAATGGTGGCCTAATTTGAAGCGGACAGTTCCCGCA
TCAGCGTTAGGATGTGTGCGCATAATTTGGTCGAAACCAATTTGGTTGGG
TTTCTTGTGGTCTGTTTCCTAGCCCCAGCCCGCGAAACTTTACAAACTTC
CGAAGGTTGTCGGAAAAAAGGGGCCAGAATGACAATTTTGACCTAGTTGT
TCTTGAGCTGGGTTATAACGCTTAGAAAGCTCCCATGCTCCATGGGGCGG
GGCCATTTATACATATATAATAGAGGACACAGACTGCTAGAAACCTTGCC
GAATTGGTACAAACCAATTCCTTCGCAATCATCGCACTGGGCCCGAACTA
CGACTGCACCCACGGGTAGGGACCAACACACTAGGAATAAACAGTCGGAC
AATACACACCTTGGGCGGCTCATCTACAGATCATACAGATCATACAGATC
AGATAGATCATCTACTGATAGATCATCTACTGATAGATCACCTACAGATA
GATCATCTACAGATAGACCATCGACAGTTAAATCATCTACAGATAGTTCA
TCTACAGATAGATCATCTACTGACAGATTACCTACAGATAAATCATCTAC
ATATATACCATCGACAGATAAATCATCTACAGATAGTTCAGACAGATCAG
ATAGGTCCTAAGCTGCCGTTGTAAGAGCTTGTTGTGCAGTGTGACCTATC
TATCTGTATAGTACAGATCCAACCCAGGAAACATGTGCCAGATCGTGCAG
ACTAGACGGCTCCCACCCGTCAACATGAGCTAGATCATACAGATCATACA
GATCATACAGATCAGGAATATACCTGCCCTGAAAGATATAGATCATGATC
TATCTGTAGGTGATATGTTCAATGTGTACATTTTTTCCAGTAGTAATAGT
ACTAATACAAGGATTATGTTCCACGCGTAATCGAAGTAGTGTATGCCTCA
AACGCGGTTTCAGCCGGAACTTGTAGGGTAAAGGGCTTTCTAACTTTTGC
AACACTGATGTATAGCAAGCGCGTGGGCTGTCTCTGCGCTTGCGATTATC
TGTAGCGCTTCTCATGGCGTCTCTTGGTTTGGCTTTGTTTGGCGTGACAT
GGTTTGACGTGGCTGGTCTTGGATACTGTAGACTTCGCTGGGCTTCGCCG
CACTGGACATACTTGTCTAATCTTGGCTGACTTGGCTTGACTTGGCTTGA
CTTGGCTTGACTTGACTTGGCTTGACTTGGCTTGACTTGGCTTGACTTGG
CTTGACTTGGCTTGACTTGGCTTGACTTGGCTTGACTTGACTTGACTTGG
CTTGGCTTGACTTGGCTTGACTTGGCTTGACTTGGCTTGACTTGACTCGA
CTTGGCTTGACTTGACTTGACTCGCTTGACTTGGCTTGACTAACCTTAAG
ATGGGCTCGTAGTACGTAAGATTTCTGAGGATATTGTACGGACTCGAGGC
ACTTGAGGGACTTAAAAAGCTCCACATCTCCCCCAACCCCTACACCTTGT
CTTGACAAAATCAAAAGGACCCTTAACCTCGGCCTTCCGTAGGTACTGTA
ACAAGTAATGGGATCGACTATGTTCTATGCTGGACGCAGCAGTCCTCCTG
TTGACGAACCCCGTCAGTCACGAAATACTAAAAAGCTTAACAGGGCTGTT
CACGGGTCATGGCCCCTCCCGCAGGTCGGGTCAGGAGGTCGTCAAAATCT
CACGGGTCGGGTCGGATAGGGTTGGATCAGGAGGTCTTCAAAAATTCCCG
CGTAGAGTAGAGGTCGGGTTAGGTAACCCGACCCGACCCGACCCAACCCG
TGAGCAACCCGGAAAAACGGCTACCCCAATTTTTTTAATGGGTCTTTCCT
TGCCTTTAGTGTGTATCGATTTTTACCGTCACCGCTTATGCAGGTGACAT
CGACGGCGACGGGTAGATTGCAGGCCACCACGGTGTCAACCGCTAGAGGA
GGAGGCGCCTCGGGGGCTGTTGCGGGGGGGGCAGGCGGGGGTGCGGCGGG
GGAGGGGGGTGCGGGGGCATCAAGAGTAAGGTGAGTCCGGGTGGAGTTGT
AGTTTTCTTGAGATACGCCTTGATGTGGGGAGGGCAGGCGGGGGGGCTGC
GGGGCGCGCGAGATCGTCAAGAGCAAGGTGAGACTTCGGCTGGATTTATA
GTTTTCTTGGGCAATACCGCGATTTGTAATGAGTGATGTGCGGTGTGTTT
CTTGTTGTGGTGGGTGGTCGGTCGGTTCGGCTGAGCTCGGCTTGCCAGAC
TGCGTCGGTTTCGGTTCTCCAAAAATGTCCACGTCCGTAGCGTGTGTAGA
ACCCACTTGGGGAAGACGTGTTCGGTCGCCCTGTCTGTCTGCGTGGTCTT
GGTGCATAAAATACACTTCTTCCAATTATTGCGTTCTTCACCTCTATCTA
CCCAGGCCAGGCCGCATGCGTGTTCGAGTGCGCGGCAGCCGGTGCTCCTG
CATGTGTGTGTGTTCTTGTTTTATTAAAAGTTGACGCAAGGATGGCGCAC
GGGAGAATGACTACGTCGACAGCTCTAGAGCAACACCGACTGTCCCGATA
AGAAAACGCGTGCGTATTGGGTACGCCTCATGAAGATGACAGCTCGGGAA
CCCGGCCGAATTTTCGTGCCCGTCTTGCTTCGGGCCACCCATCCCGCTCT
TTTTTTTCCTCTTGTTTGTTTTTCCTCAGTTTTTTTTTTCTTCCTTTTTT
GCTCTTTGTTGTCTTTGTGTCAGCACTGTCTTTTCTCGTTTGCGTATTTT
GTCTTCTCTTTTAGTTGTGTTTTTTTTTATGTTGCCCTCTTTTTTTCATT
GGGTCTCTTTCGATCTTTCTCTCCATTCTTGTTCTTGTAATCTTCTCTGT
TTCTTTTTTTTATGTTATTTCTTCTGCCTTTTTTTTTTCCTTTCTGTTTC
TCTTCTCCGCGGGTCCCTTCAGAGAACGAGGGACGAGTGTAGATCTAACT
AGCGTGGAAGAGGCGCCTTCGGCGATGACAATCACCGGGAGCATGAACGA
GGAAGGCTTAGGGCTGCTCTCATGGTGGGAGTAG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig9801:2318..9701- >mRNA_M-pyrifera_M_contig9801.22571.1 ID=mRNA_M-pyrifera_M_contig9801.22571.1|Name=mRNA_M-pyrifera_M_contig9801.22571.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1500bp|location=Sequence derived from alignment at M-pyrifera_M_contig9801:2318..9701- (Macrocystis pyrifera P11B4 male) CAGGTCGCTCCAGGTACGTTCAGCGGCGATTCTCTCGACGTGATCACGGC ACAGATAGAGGCCAAGTTTGCAGACAGGGTGATCGCCAACGTTGGCCTAT GCATAAGTCTGCACAGCTACGAGAGCATCGGAGACCCCTACGTTTACCCC TCGGACGGTGCTGCACACTACAAGCAGGTCGCTCCAGGTACGTTCAGCGG CGATTCTCTCGACGTGATCACGGCACAGATAGAGGCCAAGTTTGCAGACA GGGTGATCGCCAACGTTGGCCTATGCATAAGTCTGCACAGCTACGAGAGC ATCGGAGACCCCTACGTTTACCCCTCGGACGGTGCTGCACACTACAAGGT GCGGTTTCGCCTACTGGTGTTTCGGCCGTTCGTGGGCGAGATACTTGCTG GGAAGGTGACCTCTTGCACCGAGCATGGGATCAAGGTGCGGTTTCGCCTA CTGGTGTTTCGGCCGTTCGTGGGCGAGATACTTGCTGGGAAGGTGACCTC TTGCACCGAGCATGGGATCAAGGTTTCGCTGGACTTCTTCGAGCACGCCT CCATACCCAAGGACCTCCTGCAGTCGCCGTCTGTATTGTTTCGCTGGACT TCTTCGAGCACGCCTCCATACCCAAGGACCTCCTGCAGTCGCCGTCTGTA TTCACTCGAGGGGAGTGGATGTGGTCTTATCCCGACCCAGATGCAGAGGA CGGAGAAGACGGTGACGGGGGCACGGGGGGCGGTGAGGGGGAAGGGAGTG AGGCGGAGGACACTGCCTTTTCGCTGGCTTTGCACGACGAAGTGCGGTTT CGAGTGCGGACGCTGGAGTTCACGCAGCACTCGAGGGGAGTGGATGTGGT CTTATCCCGACCCAGATGCAGAGGACGGAGAAGACGGTGACGGGGGCACG GGGGGCGGTGAGGGGGAAGGGAGTGAGGCGGAGGACACTGCCTTTTCGCT GGCTTTGCACGACGAAGTGCGGTTTCGAGTGCGGACGCTGGAGTTCACGC AGGTGACATCGACGGCGACGGGTAGATTGCAGGCCACCACGGTGTCAACC GCTAGAGGAGGAGGCGCCTCGGGGGCTGTTGCGGGGGGGGCAGGCGGGGG TGCGGCGGGGGAGGGGGGTGCGGGGGCATCAAGAGTAAGGTGACATCGAC GGCGACGGGTAGATTGCAGGCCACCACGGTGTCAACCGCTAGAGGAGGAG GCGCCTCGGGGGCTGTTGCGGGGGGGGCAGGCGGGGGTGCGGCGGGGGAG GGGGGTGCGGGGGCATCAAGAGTAAGAGAACGAGGGACGAGTGTAGATCT AACTAGCGTGGAAGAGGCGCCTTCGGCGATGACAATCACCGGGAGCATGA ACGAGGAAGGCTTAGGGCTGCTCTCATGGTGGGAGTAGAGAACGAGGGAC GAGTGTAGATCTAACTAGCGTGGAAGAGGCGCCTTCGGCGATGACAATCA CCGGGAGCATGAACGAGGAAGGCTTAGGGCTGCTCTCATGGTGGGAGTAG back to top
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