mRNA_M-pyrifera_M_contig9800.22569.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9800.22569.1
Unique NamemRNA_M-pyrifera_M_contig9800.22569.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.560e-27
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLPKPSVVDVP 213
            AHAIS+AV IPVMAASGL D+TAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIAS+MGLPKPS V+ P
Sbjct:  203 AHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAP 273
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: D8SUW3_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SUW3_SELML)

HSP 1 Score: 84.7 bits (208), Expect = 2.450e-15
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLPKPSVVDVPSRVVENA 234
            A++ISRA+ +PV+ ASGL  +TAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+IA +MGL +PS   +P R  + A
Sbjct:  225 AYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGL-EPSTEKIPERARDKA 301
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: D8RYP1_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYP1_SELML)

HSP 1 Score: 84.7 bits (208), Expect = 2.450e-15
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLPKPSVVDVPSRVVENA 234
            A++ISRA+ +PV+ ASGL  +TAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+IA +MGL +PS   +P R  + A
Sbjct:  225 AYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGL-EPSTEKIPERARDKA 301
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.670e-15
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    4 HAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLPKPSVVDVPSR 219
            +AI+RAV IPVM +SG+ ++TA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A +M LP P+ + V  +
Sbjct:  202 YAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPATMPVEQK 273
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: A0A0D6ACD4_9CHRO (IMP dehydrogenase/GMP reductase n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACD4_9CHRO)

HSP 1 Score: 82.8 bits (203), Expect = 5.590e-15
Identity = 42/60 (70.00%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSM 180
            AHAISRAV +PVM ASGL D+TAPMA++AGA G+GVGSAVNKLN +I M+AVVR++  S+
Sbjct:  180 AHAISRAVEVPVMCASGLSDVTAPMAISAGADGIGVGSAVNKLNDQIAMIAVVRSLVESL 239
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: A0A2W4XLK0_9CYAN (DUF561 domain-containing protein n=1 Tax=Phormidesmis priestleyi TaxID=268141 RepID=A0A2W4XLK0_9CYAN)

HSP 1 Score: 82.4 bits (202), Expect = 8.240e-15
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLPK 192
            AHAISRAV +PV+ ASGL D+TAPMALAAGA GVGVGSAV+KLN  + MVAVVR++A +M   K
Sbjct:  183 AHAISRAVSVPVLCASGLSDVTAPMALAAGAAGVGVGSAVHKLNDPLAMVAVVRSLAEAMQTAK 246
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: A0A835IN82_9MAGN (Uncharacterized protein ycf23 n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IN82_9MAGN)

HSP 1 Score: 83.2 bits (204), Expect = 1.030e-14
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLP 189
            A++ISRAVRIPVM +SGL  +TAPMALAAGA GVGVGS+VNKLN  + M+A VR+IA S+GLP
Sbjct:  236 AYSISRAVRIPVMCSSGLSSVTAPMALAAGAAGVGVGSSVNKLNDVVVMIAEVRSIADSLGLP 298
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: W1PNB4_AMBTC (Uncharacterized protein ycf23 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PNB4_AMBTC)

HSP 1 Score: 80.9 bits (198), Expect = 1.050e-14
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGLPKPS 198
            A++ISRAV+IPV+ +SGL  +TAPMALAAGA GVGVGSAVNKLN  + M+A VR+IA ++GLP  S
Sbjct:  120 AYSISRAVKIPVICSSGLSAVTAPMALAAGASGVGVGSAVNKLNDVVAMIAEVRSIADAIGLPVKS 185
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: A0A3M9ZCT6_9CYAN (DUF561 domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZCT6_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 1.440e-14
Identity = 40/62 (64.52%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGL 186
            AHAISRAV +PV+ ASGL D+TAPMA+AAGA G+GVGSA+N+LN E+ MVAVVR++  ++ +
Sbjct:  180 AHAISRAVSVPVLCASGLSDVTAPMAIAAGAAGIGVGSAINRLNDELAMVAVVRSLVEALAI 241
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BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Match: K9F1L6_9CYAN (Uncharacterized protein n=3 Tax=Leptolyngbyaceae TaxID=1890438 RepID=K9F1L6_9CYAN)

HSP 1 Score: 81.6 bits (200), Expect = 1.490e-14
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 AHAISRAVRIPVMAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSM 180
            AHAISRAV IPV+ ASG+ D+TAPMA+AAGA GVGVGSAVNKLN+EI M+A VR++  S+
Sbjct:  180 AHAISRAVCIPVLCASGISDVTAPMAIAAGAAGVGVGSAVNKLNNEIAMIAAVRSLRESL 239
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9800.22569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIP5_ECTSI7.560e-2788.73Uncharacterized protein ycf23 n=2 Tax=Ectocarpus T... [more]
D8SUW3_SELML2.450e-1558.97Uncharacterized protein ycf23 n=2 Tax=Selaginella ... [more]
D8RYP1_SELML2.450e-1558.97Uncharacterized protein ycf23 n=2 Tax=Selaginella ... [more]
A0A835YK10_9STRA4.670e-1561.11Uncharacterized protein ycf23 n=1 Tax=Tribonema mi... [more]
A0A0D6ACD4_9CHRO5.590e-1570.00IMP dehydrogenase/GMP reductase n=1 Tax=Geminocyst... [more]
A0A2W4XLK0_9CYAN8.240e-1570.31DUF561 domain-containing protein n=1 Tax=Phormides... [more]
A0A835IN82_9MAGN1.030e-1471.43Uncharacterized protein ycf23 n=1 Tax=Coptis chine... [more]
W1PNB4_AMBTC1.050e-1466.67Uncharacterized protein ycf23 n=1 Tax=Amborella tr... [more]
A0A3M9ZCT6_9CYAN1.440e-1464.52DUF561 domain-containing protein n=2 Tax=Pseudanab... [more]
K9F1L6_9CYAN1.490e-1471.67Uncharacterized protein n=3 Tax=Leptolyngbyaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9800contigM-pyrifera_M_contig9800:2506..4072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog2880.D7FIP5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF561)
EggNOG OGs28MV1@1,2QUDA@2759
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-27_000540.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size875
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9800.22569.1prot_M-pyrifera_M_contig9800.22569.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9800 2542..3440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.362069-UTR-M-pyrifera_M_contig9800:2505..25411622816897.362069-UTR-M-pyrifera_M_contig9800:2505..2541Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9800 2506..2541 +
1692278242.9498842-UTR-M-pyrifera_M_contig9800:2505..25411692278242.9498842-UTR-M-pyrifera_M_contig9800:2505..2541Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9800 2506..2541 +
1622816897.3939092-UTR-M-pyrifera_M_contig9800:3440..40721622816897.3939092-UTR-M-pyrifera_M_contig9800:3440..4072Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9800 3441..4072 +
1692278242.9815958-UTR-M-pyrifera_M_contig9800:3440..40721692278242.9815958-UTR-M-pyrifera_M_contig9800:3440..4072Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9800 3441..4072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.372633-CDS-M-pyrifera_M_contig9800:2541..26231622816897.372633-CDS-M-pyrifera_M_contig9800:2541..2623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9800 2542..2623 +
1692278242.9617426-CDS-M-pyrifera_M_contig9800:2541..26231692278242.9617426-CDS-M-pyrifera_M_contig9800:2541..2623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9800 2542..2623 +
1622816897.382964-CDS-M-pyrifera_M_contig9800:3315..34401622816897.382964-CDS-M-pyrifera_M_contig9800:3315..3440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9800 3316..3440 +
1692278242.9717221-CDS-M-pyrifera_M_contig9800:3315..34401692278242.9717221-CDS-M-pyrifera_M_contig9800:3315..3440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9800 3316..3440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9800.22569.1

>prot_M-pyrifera_M_contig9800.22569.1 ID=prot_M-pyrifera_M_contig9800.22569.1|Name=mRNA_M-pyrifera_M_contig9800.22569.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MAASGLGDITAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASSMGL
PKPSVVDVPSRVVENATT*
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mRNA from alignment at M-pyrifera_M_contig9800:2506..4072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9800.22569.1 ID=mRNA_M-pyrifera_M_contig9800.22569.1|Name=mRNA_M-pyrifera_M_contig9800.22569.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1567bp|location=Sequence derived from alignment at M-pyrifera_M_contig9800:2506..4072+ (Macrocystis pyrifera P11B4 male)
GCCCACGCCATCTCCCGAGCGGTGCGGATCCCCGTCATGGCCGCCTCTGG
CCTCGGCGACATCACCGCACCCATGGCCCTGGCCGCCGGTGCCCGGGGTG
TAGGTGTAGGATCCGCAGGTGAGCTACTGTAGACGCTCCAACCACAAACA
GATTCAAGGCTAGGGTGGTGCAGTTATTGAGCTACTTTTTATATGTAGGA
GCCCCCACAATTTGCGCGGTTCAGTAGTGCAACGCCCTCTTGCCTCAATA
TTTTAATGTATTTATTATACTGCACAATTATCCCACACCCATTCCTGGTG
GGTTGTCCTCAATTTCGCGGTTGCAGTTATTGAGGGGTTGTATTACCCTT
TTTGGACGTGCCGTCTAACACGCAAGATAACACATCCCCTCGGGCGGATT
TCGAAGCTGATTTCCCCGACAGCGGGGAGAGAGTGCAAACAAATGCCGAC
GCAGCTACGGAAAGGCCTCGACGACATCTTCCCACAGCCGCCATTTTCGT
TGTGTGGTCTCCCCTGGTATTGTAGAAAATCGCCCCTGAAATTCATCCCA
GGGGGGGGGGGGGTGTTATCTTTTCACCCGTGTGATACGGTAAGTGTTTT
TCCCACACTGTGTCTAAGTTAGGTTGTCCCCAAAACGTGGATGCATTCGT
ACAGAGGGTAGGCTCGTCACCCCCCAAGCTCGCTGCGGCTTACTCTCGAA
GATGCTGCTCATCAGAACAGCTATGAAGGGCATGGTGATCAACCGATTCT
ACCACTCCTCCCCCCGCCGCTCTCGCCGCCGCGCCGTGCCCCGTTATCTT
GTTGTGGCAGTTAACAAGCTCAACAGCGAGATCGGGATGGTGGCGGTGGT
GCGGGCAATCGCGTCTTCTATGGGTCTGCCCAAGCCGAGTGTGGTAGATG
TACCCTCCCGTGTTGTTGAAAACGCAACCACGTAACTTTCATGTATCATT
TTGTCATGTAGGAGGGGCAGGGCTCGGCCGCTCGATGGACGCGTTGGATG
TTGTGATGGCGCTGCGTCGAATACATTTTAGAGCTTTCCTAAAGGCTTAG
AGCGAAAAAATGTTTTGTGTGCGTGTCGGGGTTGTGAAGTCGTCAGTCGT
GTGTAGATTTACAGGTTTTGTAGCACGTCGCAGGAGAGAAAGCTCCGCTC
CGCGTGCGTGGCCGATGCCGTGCATATTTTGCCGTATGTGATTGTGGGTG
CGAATCAGCAAGAAAAAATGTGTGTGAAACCTGGGTGCTAGTGGCGATGT
TTGCCACGTTTTTTGCTGTTGCATTTGAGCCAAGAGTCACGGCTTGTCTA
AGAGTACACACCACACGGCCTTGATGGTGGTTCCACTGTCCTACTTGATA
CCCGGTTTGTCCCGGCCACGCTTCCCCCTAGGTTTTGAATTCCAATGGTT
GACGCGTGCTACGATACGGGTAGCACTTTTTCGCCAAATTGATTTTTTGA
CTAACAGGGATTCTTGACAAGAGTATCTGCAGTACCCAATATCGTTTTTA
TATAAAGCATGCCAGATCTAATTTTCGTGGTGCATCTAAGGTCATATGGC
TCGTCGAGTTGACCTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9800:2506..4072+

>mRNA_M-pyrifera_M_contig9800.22569.1 ID=mRNA_M-pyrifera_M_contig9800.22569.1|Name=mRNA_M-pyrifera_M_contig9800.22569.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig9800:2506..4072+ (Macrocystis pyrifera P11B4 male)
ATGGCCGCCTCTGGCCTCGGCGACATCACCGCACCCATGGCCCTGGCCGC
CGGTGCCCGGGGTGTAGGTGTAGGATCCGCAGATGGCCGCCTCTGGCCTC
GGCGACATCACCGCACCCATGGCCCTGGCCGCCGGTGCCCGGGGTGTAGG
TGTAGGATCCGCAGTTAACAAGCTCAACAGCGAGATCGGGATGGTGGCGG
TGGTGCGGGCAATCGCGTCTTCTATGGGTCTGCCCAAGCCGAGTGTGGTA
GATGTACCCTCCCGTGTTGTTGAAAACGCAACCACGTAATTAACAAGCTC
AACAGCGAGATCGGGATGGTGGCGGTGGTGCGGGCAATCGCGTCTTCTAT
GGGTCTGCCCAAGCCGAGTGTGGTAGATGTACCCTCCCGTGTTGTTGAAA
ACGCAACCACGTAA
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