mRNA_M-pyrifera_M_contig9799.22563.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9799.22563.1
Unique NamemRNA_M-pyrifera_M_contig9799.22563.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9799.22563.1 vs. uniprot
Match: D8LF89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF89_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.030e-49
Identity = 119/252 (47.22%), Postives = 146/252 (57.94%), Query Frame = 1 
Query:    1 SSSPSAPAVPVPTPAVVRVFACGGTHIPAPARPMLRRVDVETASTSGAVSANAGSHPA--------SNL---------RD-------------------------TEAGIMTCVAISAAGSRGRGVLVTGSYDKAVRVMRNNAPPPHPSPLPGSSLSGGEAFPPVSMRVLGRHEDGVRSVAVSADGRWAVSGGREGTIKVWELTEEEDAPA---AAAVSGAAVAETSRAKACFQAHRGVVFSLCMSPDSRVL 621
            S S S+PA  VP   VVR+ ACGGT +PAPA+PMLRRVDV TA+ +GA +  AG   A        S+L         RD                          EAGIMTCVAISAAG+RGRG+LVTGSYDK VRV+ N   P   +P              V+MR+LGRHE+GVR+VA+SADGRWAV+G R+G +KVWE+  E    A    ++  GAA AE       F+AH+G V+SLCMSPD+R L
Sbjct:   17 SPSFSSPAPVVPP--VVRILACGGTFLPAPAKPMLRRVDVRTAAPAGAGADQAGGEEADVVSRPVRSDLCAAAAGRSERDGENXXXXXXXXXXXXXXRGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENPPXXXXXXXXXXXXXVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGLVKVWEVPRETPPGADREPSSPDGAAEAE-------FEAHKGYVYSLCMSPDARTL 259
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BLAST of mRNA_M-pyrifera_M_contig9799.22563.1 vs. uniprot
Match: A0A6H5L7H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7H8_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.520e-49
Identity = 121/256 (47.27%), Postives = 148/256 (57.81%), Query Frame = 1 
Query:    1 SSSPSAPAVPVPTPAVVRVFACGGTHIPAPARPMLRRVDVETASTS------GAVSANAGSHPASN--------------------------------------LRDTEAGIMTCVAISAAGSRGRGVLVTGSYDKAVRVMRNNAPPPHPSPLPGSSLSGGEAFPPVSMRVLGRHEDGVRSVAVSADGRWAVSGGREGTIKVWELTEEEDAPAAA-----AVSGAAVAETSRAKACFQAHRGVVFSLCMSPDSRVL 621
            SSS  AP VP    +VVR+ ACGGT +PAPA+PMLRRVDV TA+ +      G   A+  S PA +                                          EAGIMTCVAISAAG+RGRG+LVTGSYDK VRV+ N   P   +P P SS       PPV+MR+LGRHE+GVR+VA+SADGRWAV+G R+G +KVWE+  E  AP  A     +  GAA AE       F+AH+G V+SLCMSPD+R +
Sbjct:  216 SSSSPAPVVP----SVVRILACGGTFLPAPAKPMLRRVDVRTAAAAARADQAGGEEADVVSRPARSDLCAAAAGRSERNGENXXXXXXXXXXXXXXXDARGGGEAAVKEAGIMTCVAISAAGARGRGILVTGSYDKGVRVLHNVLCPDRENP-PSSSXXXXXXXPPVTMRMLGRHEEGVRAVAISADGRWAVTGDRKGIVKVWEVPRE--APPGADREPLSSDGAAEAE-------FEAHKGYVYSLCMSPDARTV 457
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BLAST of mRNA_M-pyrifera_M_contig9799.22563.1 vs. uniprot
Match: A0A4Q2DKG4_9AGAR (Uncharacterized protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2DKG4_9AGAR)

HSP 1 Score: 53.1 bits (126), Expect = 9.680e-5
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 1 
Query:  235 SRGRGVLVTGSYDKAVRV-----MRNNAPPPHPSPLPGSS----LSGGEA---FPPVSMRVLGRHEDGVRSVAVSADGRWAVSGGREGTIKVWELTEEEDAPAAAAVSGAAVAETSRAKACFQAHRGVVFSLCMSPDSRVL 621
            S+G  +LV+ S DK+V+V     +R +A  P  S LP SS    + GG       P  ++    HED + S AVS DG    SGGR+ ++++W+L +    PA+   + + V E   A    +AH   + S+  SP   +L
Sbjct:  418 SKGGQLLVSASLDKSVKVWDMEGLRKSALEPR-SNLPRSSRLPTVPGGTVSRDLKPRCVKEFVAHEDYILSAAVSHDGCLIASGGRDLSVRIWDLED----PASLNDNDSVVTERKAAYVLPEAHENTIISVDFSPSGNML 553
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9799.22563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LF89_ECTSI1.030e-4947.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7H8_9PHAE1.520e-4947.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4Q2DKG4_9AGAR9.680e-532.62Uncharacterized protein n=1 Tax=Candolleomyces abe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9799contigM-pyrifera_M_contig9799:2227..2997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-01_004050.1
Exons2
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816897.050087-CDS-M-pyrifera_M_contig9799:2226..25501622816897.050087-CDS-M-pyrifera_M_contig9799:2226..2550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9799 2227..2550 -
1692278242.7988112-CDS-M-pyrifera_M_contig9799:2226..25501692278242.7988112-CDS-M-pyrifera_M_contig9799:2226..2550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9799 2227..2550 -
1622816897.0664165-CDS-M-pyrifera_M_contig9799:2700..29971622816897.0664165-CDS-M-pyrifera_M_contig9799:2700..2997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9799 2701..2997 -
1692278242.809647-CDS-M-pyrifera_M_contig9799:2700..29971692278242.809647-CDS-M-pyrifera_M_contig9799:2700..2997Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9799 2701..2997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9799.22563.1prot_M-pyrifera_M_contig9799.22563.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9799 2227..2997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9799.22563.1

>prot_M-pyrifera_M_contig9799.22563.1 ID=prot_M-pyrifera_M_contig9799.22563.1|Name=mRNA_M-pyrifera_M_contig9799.22563.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp
SSSPSAPAVPVPTPAVVRVFACGGTHIPAPARPMLRRVDVETASTSGAVS
ANAGSHPASNLRDTEAGIMTCVAISAAGSRGRGVLVTGSYDKAVRVMRNN
APPPHPSPLPGSSLSGGEAFPPVSMRVLGRHEDGVRSVAVSADGRWAVSG
GREGTIKVWELTEEEDAPAAAAVSGAAVAETSRAKACFQAHRGVVFSLCM
SPDSRVL
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mRNA from alignment at M-pyrifera_M_contig9799:2227..2997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9799.22563.1 ID=mRNA_M-pyrifera_M_contig9799.22563.1|Name=mRNA_M-pyrifera_M_contig9799.22563.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig9799:2227..2997- (Macrocystis pyrifera P11B4 male)
TCGTCGTCTCCGTCTGCGCCGGCAGTGCCGGTGCCGACGCCCGCGGTAGT
CCGAGTGTTCGCCTGTGGGGGCACTCACATACCTGCCCCGGCCAGGCCGA
TGCTGCGCCGCGTGGACGTCGAGACGGCGAGCACCTCGGGCGCGGTCTCG
GCGAACGCAGGGAGCCACCCCGCGTCCAACCTGCGCGACACGGAGGCCGG
AATAATGACGTGCGTCGCCATCTCCGCCGCGGGCTCGAGGGGCAGGGGCG
TCCTCGTGACGGGGTCGTACGACAAGGCGGTGCGCGTAATGCGCAACGTT
CTGTCCCCCCCTCCCTCTTCCTCCTCCTCCTCCGACCCCAACGACGATTA
TAATGACGATGAGGAGGAAGGTGATGACGATGACGAAGATAATGATGATG
ATGATGATGATGATGCTGATGATGGCCGCCTGCCGAGGGGCGCTGAGAAC
GCGCCGCCGCCTCATCCGTCGCCGTTGCCGGGATCGTCCTTGTCGGGCGG
TGAGGCCTTCCCGCCGGTGTCCATGAGAGTGCTGGGTCGCCACGAGGACG
GGGTGCGGTCGGTAGCGGTTTCGGCGGACGGTCGGTGGGCCGTCAGCGGC
GGGCGGGAAGGTACCATCAAGGTGTGGGAGCTAACGGAGGAGGAAGACGC
TCCCGCCGCCGCGGCGGTGTCGGGGGCGGCGGTGGCCGAGACCAGTAGGG
CCAAGGCCTGCTTCCAGGCCCACAGGGGGGTGGTTTTTTCGTTGTGCATG
TCCCCGGACTCGCGGGTGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9799:2227..2997-

>mRNA_M-pyrifera_M_contig9799.22563.1 ID=mRNA_M-pyrifera_M_contig9799.22563.1|Name=mRNA_M-pyrifera_M_contig9799.22563.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig9799:2227..2997- (Macrocystis pyrifera P11B4 male)
TCGTCGTCTCCGTCTGCGCCGGCAGTGCCGGTGCCGACGCCCGCGGTAGT
CCGAGTGTTCGCCTGTGGGGGCACTCACATACCTGCCCCGGCCAGGCCGA
TGCTGCGCCGCGTGGACGTCGAGACGGCGAGCACCTCGGGCGCGGTCTCG
GCGAACGCAGGGAGCCACCCCGCGTCCAACCTGCGCGACACGGAGGCCGG
AATAATGACGTGCGTCGCCATCTCCGCCGCGGGCTCGAGGGGCAGGGGCG
TCCTCGTGACGGGGTCGTACGACAAGGCGGTGCGCGTAATGCGCAACTCG
TCGTCTCCGTCTGCGCCGGCAGTGCCGGTGCCGACGCCCGCGGTAGTCCG
AGTGTTCGCCTGTGGGGGCACTCACATACCTGCCCCGGCCAGGCCGATGC
TGCGCCGCGTGGACGTCGAGACGGCGAGCACCTCGGGCGCGGTCTCGGCG
AACGCAGGGAGCCACCCCGCGTCCAACCTGCGCGACACGGAGGCCGGAAT
AATGACGTGCGTCGCCATCTCCGCCGCGGGCTCGAGGGGCAGGGGCGTCC
TCGTGACGGGGTCGTACGACAAGGCGGTGCGCGTAATGCGCAACAACGCG
CCGCCGCCTCATCCGTCGCCGTTGCCGGGATCGTCCTTGTCGGGCGGTGA
GGCCTTCCCGCCGGTGTCCATGAGAGTGCTGGGTCGCCACGAGGACGGGG
TGCGGTCGGTAGCGGTTTCGGCGGACGGTCGGTGGGCCGTCAGCGGCGGG
CGGGAAGGTACCATCAAGGTGTGGGAGCTAACGGAGGAGGAAGACGCTCC
CGCCGCCGCGGCGGTGTCGGGGGCGGCGGTGGCCGAGACCAGTAGGGCCA
AGGCCTGCTTCCAGGCCCACAGGGGGGTGGTTTTTTCGTTGTGCATGTCC
CCGGACTCGCGGGTGCTGAACGCGCCGCCGCCTCATCCGTCGCCGTTGCC
GGGATCGTCCTTGTCGGGCGGTGAGGCCTTCCCGCCGGTGTCCATGAGAG
TGCTGGGTCGCCACGAGGACGGGGTGCGGTCGGTAGCGGTTTCGGCGGAC
GGTCGGTGGGCCGTCAGCGGCGGGCGGGAAGGTACCATCAAGGTGTGGGA
GCTAACGGAGGAGGAAGACGCTCCCGCCGCCGCGGCGGTGTCGGGGGCGG
CGGTGGCCGAGACCAGTAGGGCCAAGGCCTGCTTCCAGGCCCACAGGGGG
GTGGTTTTTTCGTTGTGCATGTCCCCGGACTCGCGGGTGCTG
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