mRNA_M-pyrifera_M_contig9794.22558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9794.22558.1
Unique NamemRNA_M-pyrifera_M_contig9794.22558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9794.22558.1 vs. uniprot
Match: A0A1J7JTV8_9PEZI (WSC-domain-containing protein n=1 Tax=Coniochaeta ligniaria NRRL 30616 TaxID=1408157 RepID=A0A1J7JTV8_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 4.530e-7
Identity = 33/89 (37.08%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:    4 CFCSADGDNPAELGTATCGQACTGNESQICGDRDAISVYQYVDTIIIPVPPTPSDDYVTLGCYTD-LESPRVLTGP---VVDNSMTTQV 258
            C+C +  + P+ +  + C   CTGN+S++CG  + IS+YQ  DT   P+  T   DY  LGCY D  +  R L+ P   V   ++TT+V
Sbjct:   88 CYCGSAVNGPS-VDESQCTYRCTGNQSEVCGGSNIISIYQ--DTTFTPIDETTVADYAPLGCYFDNADDGRALSYPQDSVYGANLTTEV 173
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BLAST of mRNA_M-pyrifera_M_contig9794.22558.1 vs. uniprot
Match: A0A2S7PG07_9HELO (Uncharacterized protein n=3 Tax=unclassified Rutstroemia TaxID=2684950 RepID=A0A2S7PG07_9HELO)

HSP 1 Score: 52.4 bits (124), Expect = 7.570e-6
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    1 QCFCSADGDNPAELGTATCGQACTGNESQICGDRDAISVYQYVDTIIIPVPPTPSDDYVTLGCYTDL 201
            +CFC     N  +   + C   CTG+++++CG  D ISVYQ  DT    V  T   DY+ +GC++DL
Sbjct:   94 ECFCGGS-VNGMQTDESACSYPCTGDQTEVCGGFDIISVYQ--DTTFPTVDETTVSDYMPMGCWSDL 157
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BLAST of mRNA_M-pyrifera_M_contig9794.22558.1 vs. uniprot
Match: A0A6A6WBM6_9PEZI (Heme peroxidase n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6WBM6_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 4.980e-5
Identity = 32/78 (41.03%), Postives = 41/78 (52.56%), Query Frame = 1 
Query:    1 QCFCSADGDNPAELGTATCGQACTGNESQICGDRDAISVYQYVDTIIIPVPPTPSDDYVTLGCYTDLESPRVLTGPVV 234
            QCFC  +  N        C   C+G++ +ICG  D +SVYQ  +  I P  P P + Y    CY D+ S RVL GPVV
Sbjct:  599 QCFCG-NTLNSVLAPEYDCNMPCSGDDKEICGGPDRLSVYQN-EAYIAPANP-PIEGYEYKACYVDMRSARVL-GPVV 672
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BLAST of mRNA_M-pyrifera_M_contig9794.22558.1 vs. uniprot
Match: A0A2J6Q210_9HELO (WSC-domain-containing protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q210_9HELO)

HSP 1 Score: 49.7 bits (117), Expect = 6.690e-5
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:    1 QCFCSADGDNPAELGTATCGQACTGNESQICGDRDAISVYQYVDTIIIPVPPTPSD----DYVTLGCYTDLESPRVL 219
            +CFC A  + P ++  + C   CTG+ ++ICG  D ISVYQ       P  PT +D    DY  LGCY++  + R L
Sbjct:   68 ECFCGASVNGP-QVAESFCSFPCTGDNTEICGGNDYISVYQD------PTFPTVNDSVISDYKPLGCYSEGTNGRSL 137
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9794.22558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1J7JTV8_9PEZI4.530e-737.08WSC-domain-containing protein n=1 Tax=Coniochaeta ... [more]
A0A2S7PG07_9HELO7.570e-638.81Uncharacterized protein n=3 Tax=unclassified Rutst... [more]
A0A6A6WBM6_9PEZI4.980e-541.03Heme peroxidase n=1 Tax=Pseudovirgaria hyperparasi... [more]
A0A2J6Q210_9HELO6.690e-538.96WSC-domain-containing protein n=1 Tax=Hyaloscypha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9794contigM-pyrifera_M_contig9794:9422..9688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue2.8e-07
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.8714254-CDS-M-pyrifera_M_contig9794:9421..96881622816896.8714254-CDS-M-pyrifera_M_contig9794:9421..9688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9794 9422..9688 -
1692278242.7431605-CDS-M-pyrifera_M_contig9794:9421..96881692278242.7431605-CDS-M-pyrifera_M_contig9794:9421..9688Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9794 9422..9688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9794.22558.1prot_M-pyrifera_M_contig9794.22558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9794 9422..9688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9794.22558.1

>prot_M-pyrifera_M_contig9794.22558.1 ID=prot_M-pyrifera_M_contig9794.22558.1|Name=mRNA_M-pyrifera_M_contig9794.22558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
QCFCSADGDNPAELGTATCGQACTGNESQICGDRDAISVYQYVDTIIIPV
PPTPSDDYVTLGCYTDLESPRVLTGPVVDNSMTTQVSFC
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mRNA from alignment at M-pyrifera_M_contig9794:9422..9688-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9794.22558.1 ID=mRNA_M-pyrifera_M_contig9794.22558.1|Name=mRNA_M-pyrifera_M_contig9794.22558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig9794:9422..9688- (Macrocystis pyrifera P11B4 male)
CAGTGTTTCTGCTCTGCAGACGGCGACAACCCTGCCGAGCTCGGGACGGC
AACTTGCGGCCAGGCCTGCACCGGAAATGAATCCCAGATTTGTGGAGACA
GAGATGCCATTTCCGTTTACCAGTACGTTGACACGATCATCATTCCGGTG
CCACCAACACCATCGGACGACTACGTTACTCTCGGCTGCTACACCGACTT
GGAGTCCCCCCGCGTACTCACTGGGCCTGTAGTAGACAATTCGATGACTA
CGCAAGTGAGTTTTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9794:9422..9688-

>mRNA_M-pyrifera_M_contig9794.22558.1 ID=mRNA_M-pyrifera_M_contig9794.22558.1|Name=mRNA_M-pyrifera_M_contig9794.22558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig9794:9422..9688- (Macrocystis pyrifera P11B4 male)
CAGTGTTTCTGCTCTGCAGACGGCGACAACCCTGCCGAGCTCGGGACGGC
AACTTGCGGCCAGGCCTGCACCGGAAATGAATCCCAGATTTGTGGAGACA
GAGATGCCATTTCCGTTTACCAGTACGTTGACACGATCATCATTCCGGTG
CCACCAACACCATCGGACGACTACGTTACTCTCGGCTGCTACACCGACTT
GGAGTCCCCCCGCGTACTCACTGGGCCTGTAGTAGACAATTCGATGACTA
CGCAAGTGAGTTTTTGCCAGTGTTTCTGCTCTGCAGACGGCGACAACCCT
GCCGAGCTCGGGACGGCAACTTGCGGCCAGGCCTGCACCGGAAATGAATC
CCAGATTTGTGGAGACAGAGATGCCATTTCCGTTTACCAGTACGTTGACA
CGATCATCATTCCGGTGCCACCAACACCATCGGACGACTACGTTACTCTC
GGCTGCTACACCGACTTGGAGTCCCCCCGCGTACTCACTGGGCCTGTAGT
AGACAATTCGATGACTACGCAAGTGAGTTTTTGC
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