mRNA_M-pyrifera_M_contig9793.22554.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9793.22554.1
Unique NamemRNA_M-pyrifera_M_contig9793.22554.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9793.22554.1 vs. uniprot
Match: D7FUR7_ECTSI (SET and MYND domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR7_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 9.120e-44
Identity = 108/205 (52.68%), Postives = 125/205 (60.98%), Query Frame = 1 
Query:    4 RQCLQPC------APEAT----APXXXXXXXXXCLRSVVCAECAAVATWSADPGDLPSCDGGGAAARSVLHGSLECEALSRLSALQRSQPDMVGSLLGGSTVYLRLLLRLLAMRAEQRGRKGTAXXXXXXXXXXXXXXXXXXXXXRGDSP--LSAIDDLEDHLDDLLDGGEMETRIMNTVEAARLVAPAAWKASQDTCAEYLGKL 582
            R+CLQP        PEAT               CLRSV+C+ C   A  SA+ G     DGGG +     HGSLEC+AL RLSALQR QPD+  SLLGGSTVYLRLLL+LLAMR+ + G   TA                      GD+   LS +DDLEDHLDDLLDGGEME R+ NT+ AARLVAPAAWKA+QD C+E+LGKL
Sbjct:   16 RRCLQPSHLSPRLVPEATPQGGTSPPHPRSCAKCLRSVLCSRCITAAD-SAEVGG----DGGGCS-----HGSLECDALVRLSALQREQPDLASSLLGGSTVYLRLLLQLLAMRSRELGTNSTAGSAAARA---------------GDATAYLSDMDDLEDHLDDLLDGGEMEARMGNTIGAARLVAPAAWKANQDVCSEFLGKL 195
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BLAST of mRNA_M-pyrifera_M_contig9793.22554.1 vs. uniprot
Match: A0A6H5KQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ9_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.830e-19
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:  433 IDDLEDHLDDLLDGGEMETRIMNTVEAARLVAPAAWKASQDTCAEYLGKL 582
            +DDLEDHLDDLLDGGEME RI NT+ AARLVAPAAWKA+QD C+E+LGKL
Sbjct:    1 MDDLEDHLDDLLDGGEMEARIGNTIGAARLVAPAAWKANQDVCSEFLGKL 50
[Close]
BLAST of mRNA_M-pyrifera_M_contig9793.22554.1 vs. uniprot
Match: A0A6H5JVN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN9_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.060e-13
Identity = 49/105 (46.67%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:    4 RQCLQP----------CAPEATAPXXXXXXXXXCLRSVVCAECAAVATWSADPGDLPSCDGGGAAARSVLHGSLECEALSRLSALQRSQPDMVGSLLGGSTVYLR 288
            R+CLQP           AP+             CLRSV+C+ C   A      GD     GGG +     HGSLEC+AL RLSALQR QPD+  SLLGGSTVYLR
Sbjct:   16 RRCLQPSHLSPRLMPDAAPQRGTSPPHPRSCAKCLRSVLCSRCITAAETVEVGGD-----GGGCS-----HGSLECDALVRLSALQREQPDLASSLLGGSTVYLR 110
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9793.22554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUR7_ECTSI9.120e-4452.68SET and MYND domain containing 3 n=1 Tax=Ectocarpu... [more]
A0A6H5KQZ9_9PHAE8.830e-1982.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN9_9PHAE9.060e-1346.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9793contigM-pyrifera_M_contig9793:7844..10393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue4.6e-39
Seed eggNOG ortholog2880.D7FUR7
KEGG koko:K11426
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size585
Cds size585
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9793.22554.1prot_M-pyrifera_M_contig9793.22554.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9793 7844..10393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.69136-CDS-M-pyrifera_M_contig9793:7843..79911622816896.69136-CDS-M-pyrifera_M_contig9793:7843..7991Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9793 7844..7991 +
1692278242.6100378-CDS-M-pyrifera_M_contig9793:7843..79911692278242.6100378-CDS-M-pyrifera_M_contig9793:7843..7991Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9793 7844..7991 +
1622816896.702698-CDS-M-pyrifera_M_contig9793:8057..83211622816896.702698-CDS-M-pyrifera_M_contig9793:8057..8321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9793 8058..8321 +
1692278242.6229827-CDS-M-pyrifera_M_contig9793:8057..83211692278242.6229827-CDS-M-pyrifera_M_contig9793:8057..8321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9793 8058..8321 +
1622816896.7145538-CDS-M-pyrifera_M_contig9793:10220..103931622816896.7145538-CDS-M-pyrifera_M_contig9793:10220..10393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9793 10221..10393 +
1692278242.6456852-CDS-M-pyrifera_M_contig9793:10220..103931692278242.6456852-CDS-M-pyrifera_M_contig9793:10220..10393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9793 10221..10393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9793.22554.1

>prot_M-pyrifera_M_contig9793.22554.1 ID=prot_M-pyrifera_M_contig9793.22554.1|Name=mRNA_M-pyrifera_M_contig9793.22554.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
CRQCLQPCAPEATAPSPPPPPCPVCLRSVVCAECAAVATWSADPGDLPSC
DGGGAAARSVLHGSLECEALSRLSALQRSQPDMVGSLLGGSTVYLRLLLR
LLAMRAEQRGRKGTAAAAAAAEAAAAEAAAAAAGAGRGDSPLSAIDDLED
HLDDLLDGGEMETRIMNTVEAARLVAPAAWKASQDTCAEYLGKL*
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mRNA from alignment at M-pyrifera_M_contig9793:7844..10393+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9793.22554.1 ID=mRNA_M-pyrifera_M_contig9793.22554.1|Name=mRNA_M-pyrifera_M_contig9793.22554.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2550bp|location=Sequence derived from alignment at M-pyrifera_M_contig9793:7844..10393+ (Macrocystis pyrifera P11B4 male)
TGCAGGCAGTGCCTCCAGCCCTGCGCACCCGAGGCAACGGCGCCGTCTCC
ACCCCCCCCTCCCTGCCCAGTCTGCCTGCGTTCAGTCGTTTGCGCCGAGT
GCGCCGCCGTGGCCACATGGTCAGCAGACCCAGGGGACCTTCCTTCTTGT
GCCGCTGCCGCTGCTAATGGTGCTGGTGGTGGTGTTGGTCGTGGTAATAT
TGGTGCTGGTCGAGGTGATGGTGGTGGTGCTGCTGCCAGGTCCGTGTTGC
ATGGAAGTCTTGAGTGCGAAGCGCTGTCGCGGCTTTCGGCTCTGCAGCGC
TCCCAGCCGGACATGGTGGGCTCGCTCCTGGGCGGCAGCACGGTCTATCT
TAGGCTCCTCCTGCGCTTGCTCGCCATGCGCGCGGAGCAACGCGGGAGAA
AAGGGACAGCAGCGGCGGCAGCCGCAGCCGAAGCCGCAGCAGCAGAAGCA
GCAGCAGCAGCCGCAGGAGCTGGCAGAGGTGCGCCACGTTGAGCTTCTTT
GCCGAGGATTTCCCTTGTCTTTTTTGTTAGTTTGTTTTGTTTCGGTTGTG
TTTTGTTGTGTAGGGTTGTGTTGTATTGTGTTGTCTCGGGTTCGGTTGGG
TGTTGTTGTCTTGTCTTGCCTTGCCTCGCCTTGTCTTGCCTTGCCTTGTC
TTGTCTTGTCGTATATTTCGTCTCCTACTGCGTTGTGTCCTATTGTGTTT
CGTTGCGTGACCGTGTCTTGTCTCGCCTGGTCTCGTCTCGAACCTCCTCC
TTGCCTTGTCTTTTCGTGCCTTGTCCTGTACCTGGTAACGTTTACCCTCT
ACCACATGTGCGGTACATTGTATAACGACCGTAACATTGAACACACCAAG
CAGTAGTTGAATGCGAGCATGCCAGGAGACCGCTGTTTGACCCCTTGACT
GACGACCTTGACTGACCGCTCCTACACTAAAGACACTATAGCTAATATAT
TGAGGACACGATAGGCCTTGACGCTCTCCAAGAGACAGGTCTCCTCGCAC
CCCTGCATTCCAACTTTCACAGTGGTATATTTATGGACAAGATGGGCCTT
GGTGCGTCCCAAAAATACCGACCAGCAGATTAGCAAAGAGGTTTCCATCA
CATATATGGAAACGACGCAATGAGCGCTCAACTCTTGGGAGGTGTCTCTA
TCAAGAGTAGGAACGGTGCTCCGTCTCGAAAGGGAGCAATATTGAAACGA
CCAAGGTAAAAAAAATGAGTGCGCCCCCCCCCCCGCCTCACAAGCGGTTC
TGAGTAGAAGGTTGCTCACCTTTCATGCTACTCGCCGTACACCTCACGGC
AGTTCGCGCTTAGTGCATGCAATGTCTGCCTGGTCGGTGAAAACCCGACG
TGCTCCGTCCCGGCATTGAAGGGATCCGGGGGTCTATGGTCATACGACTA
CGGCCATGCATGACATCGAGTACCCCCCTCCTCCTCCCCTCCGTCTCGAA
AGAGATGCGTGGTGATTGGTCAAATCACTACGGCAAGCAACAAATGAGTA
CGCCACCCCCCCCCCTCCCCACCCTTGAAATCGCAATATAAAGTAAGGAG
CATGCCAAAAAAGACGTTGCCAGCCATGGTTGATAGAGCTGTGTCGGCGA
AAGTAACGAAAGGCGAGCTGGAATGAGGTGGGATGGCGTAGTTGAGAAAA
TATGGAAGGATATAGGGGGAAAACAAGAAGAGATGATGTCCGCCTGGAAG
TTTGGGAGGTACACGGCAGAAGTAGAAGAAATGGTATAAAGAAGGGAAAG
GCTAGCGCTAAGAAACAAGGTGGAATCGGATAAACACTCAGAGATATGCG
GGGGATTGAGGGAAGGAACAGGAAATTTAAACGTATTTGCATGGCCCAAT
GGACTTCGCGAAAACGCTGAAACTGCGCTTTCGTGTAGGTGACCTAGACC
TGCCAAAATACAGAAAGAGGTACACCAGTAGCCGGGAGGAGGAAGTAGGT
GCACAGACGTGCCCGTGTGGCAAAGCAGTAGAGGGTAGAACTCACATAGT
AGGAGAATGTGAAATATGCAAGGAGGAACGGGATGTGTTAGAAGAGGAGA
TAAGGGAAATAGACGAATGTGACATGGAGGAGTTCGATGCACTAGATAGC
AGCGAGAAAACGATTGCTGTCCTAGGAGATAGATGGCGGCCACAGGCGGC
CAGACAGAAAGAGGATAAGATTACCACTAATTTTCTATGTAATACATGGA
AACAACGTAATGAGCGCCAAATTGTTGGAGGTGTCTCTATTAAGAGTAGG
AACGGNNNNNNNNNNCGTCTCGAAAGGGATGCGTGGTCAATGGTCTAATG
ACTAAGGCAAGCAACAAATGTGTACGCCCTCCCCCCCCTCCACCCTCCCC
TCCCCTTGCTTGTCCCAGGACGTGCAGGCGACAGTCCCTTGAGTGCCATC
GATGATCTGGAAGACCACCTTGATGATCTACTGGACGGCGGCGAAATGGA
AACGAGAATCATGAACACGGTTGAAGCGGCGAGACTCGTTGCGCCGGCAG
CATGGAAGGCTAGCCAGGACACCTGCGCGGAGTATCTGGGGAAACTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9793:7844..10393+

>mRNA_M-pyrifera_M_contig9793.22554.1 ID=mRNA_M-pyrifera_M_contig9793.22554.1|Name=mRNA_M-pyrifera_M_contig9793.22554.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig9793:7844..10393+ (Macrocystis pyrifera P11B4 male)
TGCAGGCAGTGCCTCCAGCCCTGCGCACCCGAGGCAACGGCGCCGTCTCC
ACCCCCCCCTCCCTGCCCAGTCTGCCTGCGTTCAGTCGTTTGCGCCGAGT
GCGCCGCCGTGGCCACATGGTCAGCAGACCCAGGGGACCTTCCTTCTTTG
CAGGCAGTGCCTCCAGCCCTGCGCACCCGAGGCAACGGCGCCGTCTCCAC
CCCCCCCTCCCTGCCCAGTCTGCCTGCGTTCAGTCGTTTGCGCCGAGTGC
GCCGCCGTGGCCACATGGTCAGCAGACCCAGGGGACCTTCCTTCTTGTGA
TGGTGGTGGTGCTGCTGCCAGGTCCGTGTTGCATGGAAGTCTTGAGTGCG
AAGCGCTGTCGCGGCTTTCGGCTCTGCAGCGCTCCCAGCCGGACATGGTG
GGCTCGCTCCTGGGCGGCAGCACGGTCTATCTTAGGCTCCTCCTGCGCTT
GCTCGCCATGCGCGCGGAGCAACGCGGGAGAAAAGGGACAGCAGCGGCGG
CAGCCGCAGCCGAAGCCGCAGCAGCAGAAGCAGCAGCAGCAGCCGCAGGA
GCTGGCAGAGGTGATGGTGGTGGTGCTGCTGCCAGGTCCGTGTTGCATGG
AAGTCTTGAGTGCGAAGCGCTGTCGCGGCTTTCGGCTCTGCAGCGCTCCC
AGCCGGACATGGTGGGCTCGCTCCTGGGCGGCAGCACGGTCTATCTTAGG
CTCCTCCTGCGCTTGCTCGCCATGCGCGCGGAGCAACGCGGGAGAAAAGG
GACAGCAGCGGCGGCAGCCGCAGCCGAAGCCGCAGCAGCAGAAGCAGCAG
CAGCAGCCGCAGGAGCTGGCAGAGGCGACAGTCCCTTGAGTGCCATCGAT
GATCTGGAAGACCACCTTGATGATCTACTGGACGGCGGCGAAATGGAAAC
GAGAATCATGAACACGGTTGAAGCGGCGAGACTCGTTGCGCCGGCAGCAT
GGAAGGCTAGCCAGGACACCTGCGCGGAGTATCTGGGGAAACTGTGAGCG
ACAGTCCCTTGAGTGCCATCGATGATCTGGAAGACCACCTTGATGATCTA
CTGGACGGCGGCGAAATGGAAACGAGAATCATGAACACGGTTGAAGCGGC
GAGACTCGTTGCGCCGGCAGCATGGAAGGCTAGCCAGGACACCTGCGCGG
AGTATCTGGGGAAACTGTGA
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