mRNA_M-pyrifera_M_contig97907.22543.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97907.22543.1
Unique NamemRNA_M-pyrifera_M_contig97907.22543.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A2R5G3Z8_9STRA (Solute carrier family 22 member 22 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3Z8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.480e-15
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRAL 267
            LF  RA +  AF+ TY++TPE+YPT IR+TA G ANA SR+GGM AP +GQ L E G   ++ +IFA     A +AA  + VET G AL
Sbjct:  413 LFFGRALIEAAFVLTYVYTPEVYPTTIRTTAFGLANAFSRVGGMVAPFIGQDLVERGDREMAIMIFAVFTGFAVLAAILLPVETKGVAL 501          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A7S3QTF9_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QTF9_DUNTE)

HSP 1 Score: 72.4 bits (176), Expect = 1.350e-13
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRAL 267
            L L+R  +  A+   Y++TP L PT++R+  +G  NAISRLGGMAAPLV   L EEGLS +S  +FAG C  + +    +  +T G+ L
Sbjct:  124 LLLSRFLIASAYFLLYIYTPMLLPTQVRAFGLGICNAISRLGGMAAPLVAVELVEEGLSQVSLAVFAGLCLVSGILMAFIGAQTKGQEL 212          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A1D2AHK9_AUXPR (MFS domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AHK9_AUXPR)

HSP 1 Score: 72.0 bits (175), Expect = 9.510e-13
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE 270
            LFL+RA + GA+   Y++TPE+YPT++RS  +   NA+SR+GG AAP    +L E G    +  +  G C  A  AA+ +  ET GR L+
Sbjct:  396 LFLSRAGIMGAYSVLYIYTPEIYPTKLRSFGLALCNAMSRVGGFAAPYATVSLVESGRQTAALCLLGGMCLLACAAAFFLEHETRGRDLQ 485          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: UPI0018D19DE9 (synaptic vesicle 2-related protein n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D19DE9)

HSP 1 Score: 68.9 bits (167), Expect = 1.140e-11
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGR 261
            LF+AR  + G F   Y++TPE+YPT +RSTAVG  + ++RLG M  P V Q L +  +S  +  ++A A   AA A  ++ +ET GR
Sbjct:  402 LFVARGIIAGLFQAAYVYTPEVYPTALRSTAVGACSGVARLGAMITPYVAQVLLKTSIS-TATAVYASAAIVAAFACLALPIETKGR 487          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: UPI001E685A36 (putative transporter SVOPL isoform X3 n=1 Tax=Phyllostomus hastatus TaxID=9423 RepID=UPI001E685A36)

HSP 1 Score: 68.6 bits (166), Expect = 1.240e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE 270
            LF+ RA     F T Y++T E+YPT IRS  +G + ++ R+G M AP + Q L +  L G +  +FA  C   A++A+++ +ET GRAL+
Sbjct:  243 LFMLRALAAANFSTIYIYTAEVYPTAIRSLGMGTSGSLCRIGAMVAPFISQVLLDTSLLG-ALCLFASVCVVCAISAFTLPIETKGRALQ 331          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A7E6CIN6_9CHIR (putative transporter SVOPL n=4 Tax=Phyllostomus TaxID=9422 RepID=A0A7E6CIN6_9CHIR)

HSP 1 Score: 68.6 bits (166), Expect = 1.560e-11
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE 270
            LF+ RA     F T Y++T E+YPT IRS  +G + ++ R+G M AP + Q L +  L G +  +FA  C   A++A+++ +ET GRAL+
Sbjct:  398 LFMLRALAAANFSTIYIYTAEVYPTAIRSLGMGTSGSLCRIGAMVAPFISQVLLDTSLLG-ALCLFASVCVVCAISAFTLPIETKGRALQ 486          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: UPI0006268305 (synaptic vesicle 2-related protein n=1 Tax=Athalia rosae TaxID=37344 RepID=UPI0006268305)

HSP 1 Score: 68.6 bits (166), Expect = 1.570e-11
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRAL 267
            +FLAR  + G F   Y++TPE+YPT +RS  VG  +A++RLG M+ P V Q L ++ L  ++  ++A A   AA A  ++ +ET GR L
Sbjct:  434 IFLARGLIAGVFQAAYVYTPEVYPTHLRSVGVGACSAMARLGAMSTPYVAQVLLQKSLP-IAMGVYAFAALLAAAATLALPIETKGRGL 521          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A3S0IJJ8_9DEIO (MFS transporter n=1 Tax=Deinococcus radiophilus TaxID=32062 RepID=A0A3S0IJJ8_9DEIO)

HSP 1 Score: 68.2 bits (165), Expect = 2.110e-11
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    7 LARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE 270
            L  A++ GA+ + Y +TPEL+PT +RSTA+G  +A +R+ G+ AP +G  L    LS  +  +FA + A AA+AAWS+  ET G+ LE
Sbjct:  370 LLSAALLGAWGSVYAYTPELFPTSVRSTAMGLMSAAARVAGLIAPSLGAMLVTGNLSA-ALSVFAASFAVAAIAAWSIGTETRGKQLE 456          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A8C4WGY7_9SAUR (SVOP like n=1 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4WGY7_9SAUR)

HSP 1 Score: 67.8 bits (164), Expect = 2.910e-11
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE 270
            LF+ RA V   F T Y++T E+YPT +R+  +G + ++ R+G M AP + Q L      G +  +F+G CA  A++A+++ +ET GRAL+
Sbjct:  378 LFMLRALVAANFNTIYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFIAQVLMSASFLG-ALCLFSGMCAVCAISAFTLPIETKGRALQ 466          
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Match: A0A8D0GGG7_SPHPU (SVOP like n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0GGG7_SPHPU)

HSP 1 Score: 67.8 bits (164), Expect = 2.910e-11
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVGQALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE 270
            LF+ RA V   F T Y++T E+YPT +R+  +G + ++ R+G M AP + Q L +  L G +  +FA  C   A++A+++ +ET GRAL+
Sbjct:  397 LFMLRALVAANFNTIYIYTAEVYPTTMRALGMGTSGSVCRIGAMMAPFIAQVLMDTSLVG-ALCLFASVCVVCAISAFTLPIETRGRALQ 485          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97907.22543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5G3Z8_9STRA3.480e-1551.69Solute carrier family 22 member 22 n=1 Tax=Hondaea... [more]
A0A7S3QTF9_DUNTE1.350e-1344.94Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A1D2AHK9_AUXPR9.510e-1342.22MFS domain-containing protein n=2 Tax=Auxenochlore... [more]
UPI0018D19DE91.140e-1142.53synaptic vesicle 2-related protein n=1 Tax=Plutell... [more]
UPI001E685A361.240e-1140.00putative transporter SVOPL isoform X3 n=1 Tax=Phyl... [more]
A0A7E6CIN6_9CHIR1.560e-1140.00putative transporter SVOPL n=4 Tax=Phyllostomus Ta... [more]
UPI00062683051.570e-1141.57synaptic vesicle 2-related protein n=1 Tax=Athalia... [more]
A0A3S0IJJ8_9DEIO2.110e-1144.32MFS transporter n=1 Tax=Deinococcus radiophilus Ta... [more]
A0A8C4WGY7_9SAUR2.910e-1138.89SVOP like n=1 Tax=Gopherus evgoodei TaxID=1825980 ... [more]
A0A8D0GGG7_SPHPU2.910e-1138.89SVOP like n=1 Tax=Sphenodon punctatus TaxID=8508 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97907contigM-pyrifera_M_contig97907:226..495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.8
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog3067.XP_002958698.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Sugar (and other) transporter
EggNOG OGs34HX2@3041,37NV5@33090,KOG0253@1,KOG0253@2759
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.1022887-CDS-M-pyrifera_M_contig97907:225..4951622816896.1022887-CDS-M-pyrifera_M_contig97907:225..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97907 226..495 -
1692278242.207118-CDS-M-pyrifera_M_contig97907:225..4951692278242.207118-CDS-M-pyrifera_M_contig97907:225..495Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97907 226..495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97907.22543.1prot_M-pyrifera_M_contig97907.22543.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97907 226..495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97907.22543.1

>prot_M-pyrifera_M_contig97907.22543.1 ID=prot_M-pyrifera_M_contig97907.22543.1|Name=mRNA_M-pyrifera_M_contig97907.22543.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
LFLARASVYGAFLTTYLFTPELYPTRIRSTAVGGANAISRLGGMAAPLVG
QALPEEGLSGLSFVIFAGACAAAAVAAWSMRVETAGRALE
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mRNA from alignment at M-pyrifera_M_contig97907:226..495-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97907.22543.1 ID=mRNA_M-pyrifera_M_contig97907.22543.1|Name=mRNA_M-pyrifera_M_contig97907.22543.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig97907:226..495- (Macrocystis pyrifera P11B4 male)
CTCTTCCTCGCGCGCGCCTCCGTCTACGGCGCCTTCCTCACCACCTACCT CTTCACCCCCGAGCTGTACCCGACGCGTATCCGCAGTACCGCCGTCGGCG GCGCTAACGCCATCTCGCGTCTGGGAGGCATGGCAGCGCCGCTGGTGGGC CAAGCGCTGCCGGAGGAGGGCCTCTCCGGCCTCTCCTTCGTCATCTTCGC CGGCGCGTGCGCGGCCGCCGCAGTCGCTGCCTGGAGCATGCGCGTGGAAA CGGCAGGACGCGCTCTGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97907:226..495-

>mRNA_M-pyrifera_M_contig97907.22543.1 ID=mRNA_M-pyrifera_M_contig97907.22543.1|Name=mRNA_M-pyrifera_M_contig97907.22543.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig97907:226..495- (Macrocystis pyrifera P11B4 male)
CTCTTCCTCGCGCGCGCCTCCGTCTACGGCGCCTTCCTCACCACCTACCT
CTTCACCCCCGAGCTGTACCCGACGCGTATCCGCAGTACCGCCGTCGGCG
GCGCTAACGCCATCTCGCGTCTGGGAGGCATGGCAGCGCCGCTGGTGGGC
CAAGCGCTGCCGGAGGAGGGCCTCTCCGGCCTCTCCTTCGTCATCTTCGC
CGGCGCGTGCGCGGCCGCCGCAGTCGCTGCCTGGAGCATGCGCGTGGAAA
CGGCAGGACGCGCTCTGGAGCTCTTCCTCGCGCGCGCCTCCGTCTACGGC
GCCTTCCTCACCACCTACCTCTTCACCCCCGAGCTGTACCCGACGCGTAT
CCGCAGTACCGCCGTCGGCGGCGCTAACGCCATCTCGCGTCTGGGAGGCA
TGGCAGCGCCGCTGGTGGGCCAAGCGCTGCCGGAGGAGGGCCTCTCCGGC
CTCTCCTTCGTCATCTTCGCCGGCGCGTGCGCGGCCGCCGCAGTCGCTGC
CTGGAGCATGCGCGTGGAAACGGCAGGACGCGCTCTGGAG
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