mRNA_M-pyrifera_M_contig97904.22542.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97904.22542.1
Unique NamemRNA_M-pyrifera_M_contig97904.22542.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: A0A6B2LUR9_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LUR9_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 2.700e-21
Identity = 40/96 (41.67%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVISPAGEIRHISSPADELGFNRLSLRQLLLSIV 288
            EAHA+D W LG  V I  HK++ +R +AA+++V+++G++IP+ +D+M D+F   YA WPERY+ +   G++  I  P  E G++R +L +L+ S V
Sbjct:    6 EAHASDIWPLGKQVCITNHKSIEERRSAAKRMVEEFGFEIPILLDTMSDEFDKQYAVWPERYYCVKD-GKMHMIGKPTHEFGYDRGTLYRLIDSFV 100          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: L8H8T0_ACACA (Iodothyronine deiodinase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8T0_ACACA)

HSP 1 Score: 92.0 bits (227), Expect = 2.530e-20
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVISPAGE----IRHISSPADELGFNRLSLRQLLLSIVTE 294
            EAHA DEW LG  V +++HKTM +R+A A + V+ + YKIP  +D++ + F   +AAWPERYF+I    E      H+  P  E G++R  L   L S V E
Sbjct:  200 EAHAQDEWPLGQRVCVNQHKTMEERLAIANEFVEKHEYKIPTLVDTISNQFDQEFAAWPERYFIIEQDAEGAYRCSHVGMPTTEFGYDRDQLESRLRSRVDE 301          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: F2UIE7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UIE7_SALR5)

HSP 1 Score: 79.7 bits (195), Expect = 1.820e-15
Identity = 37/101 (36.63%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 EAHAADEWRLGD----LVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVISPAGEIRHISSPADELGFNRLSLRQLLLSIVT 291
            EAHA DEW +GD    +   D+HKT+ +R  AA + V DYG+ IP+++D++D+     + AWP R+F++   G++ H + P  E  ++   LR  L S+++
Sbjct:  276 EAHAQDEWPVGDRFINVPVFDQHKTVEERATAAGKFVHDYGWHIPMYLDTLDNAVVTAFGAWPLRFFIVQ-GGKLVHKAEPTHEYTYSVQDLRDALTSLLS 375          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: UPI001CFD4630 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD4630)

HSP 1 Score: 75.1 bits (183), Expect = 2.220e-15
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVI-SPAGEIRHISSP 231
            EAHA DEW+LGD + I +HKT+ +R+ A +Q++Q   + IP  +D ++D F   ++ WPERY ++ +   ++ H+S P
Sbjct:   18 EAHACDEWKLGDKICIQQHKTIEERLDATKQMMQSLDFHIPTAVDGIEDGFEKMFSVWPERYILLENNNAKLVHVSQP 95          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: UPI001D049DA2 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D049DA2)

HSP 1 Score: 73.9 bits (180), Expect = 6.790e-15
Identity = 30/78 (38.46%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVI-SPAGEIRHISSP 231
            EAHA DEW+LGD + I++HKT+ +R+ A +Q++    Y IP  +D ++D F   +A WP+R+ ++ +   ++ H+S P
Sbjct:   18 EAHACDEWKLGDRICIEQHKTIEERLDATKQMMNGMDYHIPTAVDGIEDGFEKMFAVWPQRFILLENNDAKLLHVSKP 95          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: A0A6A5BHB7_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BHB7_NAEFO)

HSP 1 Score: 71.6 bits (174), Expect = 5.580e-14
Identity = 32/94 (34.04%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVI-SPAGEIRHISSPADELGFNRLSLRQLLL 279
            EAHA DEW+LGD + I +HK++ +R+ A + +++   Y IP  +D +++ F   +A WPERY ++ +   ++ H+S+P +  G N  +  ++L+
Sbjct:   18 EAHACDEWKLGDNICIQQHKSIEERLDATKLMMKGLNYHIPTVVDGIENSFEKMFAVWPERYILLENNDAKLLHVSNP-EAYGHNPQTFCRVLM 110          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: A0A397U5C9_9GLOM (Iodothyronine deiodinase n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U5C9_9GLOM)

HSP 1 Score: 72.8 bits (177), Expect = 6.090e-14
Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVI 195
            EAHA+D W +G+ + ++ H+T+ADR+AAA+++V+    +IPV  D+MDD F   Y+ WP R+F+I
Sbjct:   72 EAHASDVWSIGNSLGVNEHQTLADRLAAAREMVRSTQLEIPVLADTMDDTFLNLYSPWPFRFFII 136          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: A0A8H4B488_GIGMA (Ubiquitin-domain-containing protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4B488_GIGMA)

HSP 1 Score: 73.2 bits (178), Expect = 5.090e-13
Identity = 29/65 (44.62%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVI 195
            EAHA+D W +G+ + ++ H+T+ADR+AAA+++V+    +IP+  D+MDD F   Y+ WP R+F+I
Sbjct:  463 EAHASDVWSIGNSLAVNEHQTLADRLAAAREMVRSTQLEIPILADTMDDTFLNLYSPWPFRFFII 527          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: A0A8C4G4Y5_9TELE (Iodothyronine deiodinase n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4G4Y5_9TELE)

HSP 1 Score: 64.7 bits (156), Expect = 1.770e-10
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVI 195
            EAHA DEW  G+ V I +HKT+ +R+ AAQ LV++   + PV +D M D   + YAA PER +V+
Sbjct:  134 EAHATDEWAFGNNVDIKQHKTLEERLRAAQMLVRE-DPRCPVVVDDMSDVTAIKYAALPERLYVL 197          
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Match: A0A0L0D1T2_THETB (Iodothyronine deiodinase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D1T2_THETB)

HSP 1 Score: 62.4 bits (150), Expect = 3.130e-10
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 EAHAADEWRL--------GDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDDFCVNYAAWPERYFVISPAGEIRHISSPAD 237
            EAHA DEW +        G++V + + KT+ DR  AA      Y  ++PVF+D++D++F   Y AWP R++V   A  + + + PA+
Sbjct:   30 EAHALDEWPISSSRYHPTGEVVAVAQAKTVDDRAEAATHFADLYQLRLPVFLDTLDNEFQTTYGAWPLRFYVFE-ASTLGYKAMPAE 115          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97904.22542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B2LUR9_9EUKA2.700e-2141.67Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
L8H8T0_ACACA2.530e-2043.14Iodothyronine deiodinase n=1 Tax=Acanthamoeba cast... [more]
F2UIE7_SALR51.820e-1536.63Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
UPI001CFD46302.220e-1539.74uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
UPI001D049DA26.790e-1538.46uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BHB7_NAEFO5.580e-1434.04Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A397U5C9_9GLOM6.090e-1446.15Iodothyronine deiodinase n=1 Tax=Gigaspora rosea T... [more]
A0A8H4B488_GIGMA5.090e-1344.62Ubiquitin-domain-containing protein n=1 Tax=Gigasp... [more]
A0A8C4G4Y5_9TELE1.770e-1047.69Iodothyronine deiodinase n=1 Tax=Denticeps clupeoi... [more]
A0A0L0D1T2_THETB3.130e-1035.63Iodothyronine deiodinase n=1 Tax=Thecamonas trahen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97904contigM-pyrifera_M_contig97904:411..704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog529818.AMSG_09129T0
Preferred nameDIO3
KEGG koko:K01562,ko:K07754
KEGG Pathwayko04919,map04919
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001754,GO:0003407,GO:0003674,GO:0003824,GO:0004800,GO:0005575,GO:0005623,GO:0005886,GO:0006575,GO:0006590,GO:0006725,GO:0006807,GO:0006915,GO:0007275,GO:0007399,GO:0007423,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009653,GO:0009887,GO:0009987,GO:0010721,GO:0010817,GO:0012501,GO:0016020,GO:0016491,GO:0018958,GO:0019336,GO:0019439,GO:0022008,GO:0022603,GO:0030154,GO:0030182,GO:0032501,GO:0032502,GO:0033798,GO:0040008,GO:0040014,GO:0040018,GO:0042219,GO:0042403,GO:0042404,GO:0042445,GO:0042447,GO:0042461,GO:0042462,GO:0042478,GO:0042480,GO:0042670,GO:0043010,GO:0044237,GO:0044248,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045927,GO:0046530,GO:0046532,GO:0046533,GO:0046549,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048592,GO:0048593,GO:0048638,GO:0048639,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051239,GO:0051240,GO:0051241,GO:0051402,GO:0051960,GO:0051961,GO:0055114,GO:0060041,GO:0060042,GO:0060219,GO:0060284,GO:0065007,GO:0065008,GO:0070997,GO:0071704,GO:0071944,GO:0090596,GO:0097474,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901615,GO:1901616,GO:1990009,GO:2000026,GO:2000027
EggNOG free text desc.thyroxine 5-deiodinase activity
EggNOG OGs2CDB0@1,2S5FA@2759
EC1.21.99.3,1.21.99.4
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.0711257-CDS-M-pyrifera_M_contig97904:410..7041622816896.0711257-CDS-M-pyrifera_M_contig97904:410..704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97904 411..704 -
1692278242.193398-CDS-M-pyrifera_M_contig97904:410..7041692278242.193398-CDS-M-pyrifera_M_contig97904:410..704Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97904 411..704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97904.22542.1prot_M-pyrifera_M_contig97904.22542.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97904 411..704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97904.22542.1

>prot_M-pyrifera_M_contig97904.22542.1 ID=prot_M-pyrifera_M_contig97904.22542.1|Name=mRNA_M-pyrifera_M_contig97904.22542.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
EAHAADEWRLGDLVTIDRHKTMADRIAAAQQLVQDYGYKIPVFIDSMDDD
FCVNYAAWPERYFVISPAGEIRHISSPADELGFNRLSLRQLLLSIVTE
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mRNA from alignment at M-pyrifera_M_contig97904:411..704-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97904.22542.1 ID=mRNA_M-pyrifera_M_contig97904.22542.1|Name=mRNA_M-pyrifera_M_contig97904.22542.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig97904:411..704- (Macrocystis pyrifera P11B4 male)
GAGGCACACGCTGCAGACGAGTGGAGGCTCGGCGACCTCGTCACCATCGA CCGGCACAAGACCATGGCAGACCGCATCGCTGCAGCCCAGCAATTGGTCC AAGACTATGGCTACAAGATCCCCGTATTCATTGACAGTATGGACGACGAC TTCTGCGTGAATTACGCAGCGTGGCCTGAGCGGTACTTCGTTATCTCTCC TGCTGGCGAGATCCGCCACATTTCCTCTCCTGCAGATGAGCTGGGCTTCA ACAGACTCAGTCTTCGTCAACTATTGCTCAGCATTGTGACAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97904:411..704-

>mRNA_M-pyrifera_M_contig97904.22542.1 ID=mRNA_M-pyrifera_M_contig97904.22542.1|Name=mRNA_M-pyrifera_M_contig97904.22542.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig97904:411..704- (Macrocystis pyrifera P11B4 male)
GAGGCACACGCTGCAGACGAGTGGAGGCTCGGCGACCTCGTCACCATCGA
CCGGCACAAGACCATGGCAGACCGCATCGCTGCAGCCCAGCAATTGGTCC
AAGACTATGGCTACAAGATCCCCGTATTCATTGACAGTATGGACGACGAC
TTCTGCGTGAATTACGCAGCGTGGCCTGAGCGGTACTTCGTTATCTCTCC
TGCTGGCGAGATCCGCCACATTTCCTCTCCTGCAGATGAGCTGGGCTTCA
ACAGACTCAGTCTTCGTCAACTATTGCTCAGCATTGTGACAGAGGAGGCA
CACGCTGCAGACGAGTGGAGGCTCGGCGACCTCGTCACCATCGACCGGCA
CAAGACCATGGCAGACCGCATCGCTGCAGCCCAGCAATTGGTCCAAGACT
ATGGCTACAAGATCCCCGTATTCATTGACAGTATGGACGACGACTTCTGC
GTGAATTACGCAGCGTGGCCTGAGCGGTACTTCGTTATCTCTCCTGCTGG
CGAGATCCGCCACATTTCCTCTCCTGCAGATGAGCTGGGCTTCAACAGAC
TCAGTCTTCGTCAACTATTGCTCAGCATTGTGACAGAG
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