mRNA_M-pyrifera_M_contig97902.22541.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97902.22541.1
Unique NamemRNA_M-pyrifera_M_contig97902.22541.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: UPI001ED87FDF (rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87FDF)

HSP 1 Score: 61.6 bits (148), Expect = 2.380e-9
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   58 RGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            +G LS RM   GN W+E W+A  P+PAR Q RLF    EAEK LH+LET++ S +
Sbjct:  762 KGHLSERMLLPGNKWQEVWSAAKPVPARRQKRLFNDGCEAEKVLHFLETLSVSKI 816          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A2G5CC03_AQUCA (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CC03_AQUCA)

HSP 1 Score: 60.8 bits (146), Expect = 4.390e-9
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   49 VSERGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
             S+RG+LS+RM+ EGNLWRE W  + PLPA  Q+ LF  +   E  L++LE I P  L
Sbjct:  485 ASKRGQLSSRMQKEGNLWRELWETSKPLPAVKQIPLFDEDLAVEGILNFLEEITPFEL 542          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A7N0UW69_KALFE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UW69_KALFE)

HSP 1 Score: 60.5 bits (145), Expect = 5.940e-9
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   46 VVSERGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            V S +G+LS+RM+ EGNLWRE W  + P+PA  Q  LF  +   E  L+ LE  APSAL
Sbjct:  307 VESAKGQLSSRMQKEGNLWRELWETSKPVPAYKQAPLFDEDLAVEGILNQLEDTAPSAL 365          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A200QG39_9MAGN (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200QG39_9MAGN)

HSP 1 Score: 60.5 bits (145), Expect = 6.010e-9
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1
Query:   46 VVSERGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
              S+RG LS RM+ EGNLWRE W  + PLPA  Q  LF  +   E  L++LE I PS L
Sbjct:  464 ATSKRGFLSTRMQKEGNLWRELWETSKPLPAVKQTPLFDEDLAVEGILNFLEDITPSEL 522          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: UPI001C4F8F36 (rab3 GTPase-activating protein catalytic subunit isoform X1 n=2 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F8F36)

HSP 1 Score: 60.1 bits (144), Expect = 8.210e-9
Identity = 30/57 (52.63%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   52 SERGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            S RG+LS+RM+ EGNLWRE W  + PLPA  Q  LF  +   E  L+ LE I PS L
Sbjct:  480 SRRGQLSSRMQKEGNLWRELWETSKPLPAVKQAPLFDEDLAVESILNILEDIPPSEL 536          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A8B8PRT3_9MYRT (Rab3 GTPase-activating protein catalytic subunit n=15 Tax=Myrtoideae TaxID=1699513 RepID=A0A8B8PRT3_9MYRT)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-8
Identity = 31/55 (56.36%), Postives = 32/55 (58.18%), Query Frame = 1
Query:   58 RGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            RGRLS RM   GNLWR+ W     LPA  Q  L     EAEK LHYLETI P  L
Sbjct:  683 RGRLSQRMSERGNLWRKIWNDAPSLPASEQKPLLDPHREAEKILHYLETIRPHQL 737          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A5C7IET0_9ROSI (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IET0_9ROSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.860e-8
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   58 RGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            +G+LS RM+ EGNLWRE W  + P+PA  QV LF  +   E  L++LE I PS L
Sbjct:  469 KGQLSTRMQKEGNLWRELWETSKPVPAVKQVPLFDEDLAVEGILNFLEEIPPSEL 523          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A5P1FB21_ASPOF (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FB21_ASPOF)

HSP 1 Score: 58.5 bits (140), Expect = 2.860e-8
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   52 SERGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            S RGRLSARM+ EGNLWRE W +  PLPA  QV L+  +   +  L  LE I P  L
Sbjct:  445 SRRGRLSARMQKEGNLWRELWESAKPLPAIKQVPLYDEDLAVDSILTTLEDIQPREL 501          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A7C9ESW7_OPUST (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ESW7_OPUST)

HSP 1 Score: 58.5 bits (140), Expect = 2.870e-8
Identity = 29/58 (50.00%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   49 VSERGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
             S RGRLS+RM+ EGNLWRE W    P+PA  Q  +F  +   E  L  LE I+PS L
Sbjct:  472 TSSRGRLSSRMQKEGNLWRELWETAKPVPAVRQAPIFDEDLTVEGVLTTLEEISPSEL 529          
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Match: A0A8J5ENV3_ZINOF (Rab3 GTPase-activating protein catalytic subunit n=3 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5ENV3_ZINOF)

HSP 1 Score: 58.2 bits (139), Expect = 3.960e-8
Identity = 29/55 (52.73%), Postives = 33/55 (60.00%), Query Frame = 1
Query:   58 RGRLSARMEAEGNLWRETWAATAPLPARAQVRLFKHETEAEKALHYLETIAPSAL 222
            RG+LS RM   GNLWR+ W A+ PLP   Q  L     E EK LHYLET+ P  L
Sbjct:  745 RGKLSQRMSEHGNLWRQIWNASPPLPISEQKPLLDPIREGEKILHYLETLKPYQL 799          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97902.22541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001ED87FDF2.380e-952.73rab3 GTPase-activating protein catalytic subunit n... [more]
A0A2G5CC03_AQUCA4.390e-950.00Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A7N0UW69_KALFE5.940e-950.85Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A200QG39_9MAGN6.010e-950.85Rab3 GTPase-activating protein catalytic subunit n... [more]
UPI001C4F8F368.210e-952.63rab3 GTPase-activating protein catalytic subunit i... [more]
A0A8B8PRT3_9MYRT2.120e-856.36Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A5C7IET0_9ROSI2.860e-850.91Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A5P1FB21_ASPOF2.860e-852.63Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A7C9ESW7_OPUST2.870e-850.00Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A8J5ENV3_ZINOF3.960e-852.73Rab3 GTPase-activating protein catalytic subunit n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97902contigM-pyrifera_M_contig97902:253..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.5
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog45351.EDO49526
Preferred nameRAB3GAP1
KEGG koko:K18270
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0001654,GO:0001956,GO:0003008,GO:0003674,GO:0005085,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005811,GO:0005829,GO:0006807,GO:0006810,GO:0006914,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010171,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010807,GO:0012505,GO:0014048,GO:0014049,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0017016,GO:0017137,GO:0017157,GO:0017158,GO:0019222,GO:0019538,GO:0019899,GO:0021536,GO:0021761,GO:0021854,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0030695,GO:0030900,GO:0031267,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031647,GO:0031984,GO:0032268,GO:0032270,GO:0032386,GO:0032483,GO:0032501,GO:0032502,GO:0032879,GO:0032890,GO:0032892,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034389,GO:0034613,GO:0042175,GO:0042391,GO:0043010,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043269,GO:0043270,GO:0043547,GO:0044070,GO:0044087,GO:0044088,GO:0044089,GO:0044090,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045202,GO:0046578,GO:0046907,GO:0046928,GO:0046982,GO:0046983,GO:0048167,GO:0048168,GO:0048172,GO:0048489,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050746,GO:0050747,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0050806,GO:0050821,GO:0050877,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051056,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051588,GO:0051590,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051952,GO:0051954,GO:0051955,GO:0051957,GO:0051966,GO:0051968,GO:0060076,GO:0060078,GO:0060079,GO:0060255,GO:0060322,GO:0060323,GO:0060324,GO:0060325,GO:0060341,GO:0060589,GO:0060627,GO:0061646,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070972,GO:0071704,GO:0071782,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0097051,GO:0097435,GO:0097479,GO:0097480,GO:0098693,GO:0098772,GO:0098827,GO:0098916,GO:0099003,GO:0099177,GO:0099536,GO:0099537,GO:0099565,GO:1901564,GO:1902115,GO:1902117,GO:1902531,GO:1902803,GO:1903059,GO:1903061,GO:1903233,GO:1903294,GO:1903296,GO:1903305,GO:1903371,GO:1903373,GO:1903530,GO:1903532,GO:1903793,GO:1905114,GO:1990000,GO:2000112,GO:2000300,GO:2000785,GO:2000786
EggNOG free text desc.positive regulation of glutamate neurotransmitter secretion in response to membrane depolarization
EggNOG OGs38HEI@33154,3BAPD@33208,KOG2390@1,KOG2390@2759
COG Functional cat.DKL
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.035727-CDS-M-pyrifera_M_contig97902:252..4741622816896.035727-CDS-M-pyrifera_M_contig97902:252..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97902 253..474 -
1692278242.1808057-CDS-M-pyrifera_M_contig97902:252..4741692278242.1808057-CDS-M-pyrifera_M_contig97902:252..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97902 253..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97902.22541.1prot_M-pyrifera_M_contig97902.22541.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97902 253..474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97902.22541.1

>prot_M-pyrifera_M_contig97902.22541.1 ID=prot_M-pyrifera_M_contig97902.22541.1|Name=mRNA_M-pyrifera_M_contig97902.22541.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
SERRQETECEGARKAVVSERGRLSARMEAEGNLWRETWAATAPLPARAQV
RLFKHETEAEKALHYLETIAPSAL
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mRNA from alignment at M-pyrifera_M_contig97902:253..474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97902.22541.1 ID=mRNA_M-pyrifera_M_contig97902.22541.1|Name=mRNA_M-pyrifera_M_contig97902.22541.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig97902:253..474- (Macrocystis pyrifera P11B4 male)
TCTGAGCGTAGACAAGAGACAGAGTGTGAGGGAGCGAGGAAGGCGGTGGT GAGCGAGCGGGGACGGCTGAGCGCGCGCATGGAGGCGGAGGGAAACCTCT GGCGCGAGACCTGGGCCGCCACCGCCCCCCTGCCGGCGCGAGCGCAGGTG CGGCTCTTCAAGCACGAGACTGAGGCAGAGAAGGCTCTGCACTACCTCGA AACCATCGCTCCCTCCGCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97902:253..474-

>mRNA_M-pyrifera_M_contig97902.22541.1 ID=mRNA_M-pyrifera_M_contig97902.22541.1|Name=mRNA_M-pyrifera_M_contig97902.22541.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig97902:253..474- (Macrocystis pyrifera P11B4 male)
TCTGAGCGTAGACAAGAGACAGAGTGTGAGGGAGCGAGGAAGGCGGTGGT
GAGCGAGCGGGGACGGCTGAGCGCGCGCATGGAGGCGGAGGGAAACCTCT
GGCGCGAGACCTGGGCCGCCACCGCCCCCCTGCCGGCGCGAGCGCAGGTG
CGGCTCTTCAAGCACGAGACTGAGGCAGAGAAGGCTCTGCACTACCTCGA
AACCATCGCTCCCTCCGCGCTCTCTGAGCGTAGACAAGAGACAGAGTGTG
AGGGAGCGAGGAAGGCGGTGGTGAGCGAGCGGGGACGGCTGAGCGCGCGC
ATGGAGGCGGAGGGAAACCTCTGGCGCGAGACCTGGGCCGCCACCGCCCC
CCTGCCGGCGCGAGCGCAGGTGCGGCTCTTCAAGCACGAGACTGAGGCAG
AGAAGGCTCTGCACTACCTCGAAACCATCGCTCCCTCCGCGCTC
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