mRNA_M-pyrifera_M_contig979.22539.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig979.22539.1
Unique NamemRNA_M-pyrifera_M_contig979.22539.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.230e-38
Identity = 67/87 (77.01%), Postives = 80/87 (91.95%), Query Frame = 1
Query:    1 QTYLLKLASPGQEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +T+L+KLA+PG+EKAVLLLESG RFHTT+F+H KSDMPS FSMKLRKHI+ +RLED+RQ+  DRVVDFKFGSGDA+ H+ILELYASG
Sbjct:   35 KTFLIKLANPGREKAVLLLESGTRFHTTRFSHDKSDMPSAFSMKLRKHIKAKRLEDIRQLAFDRVVDFKFGSGDAACHIILELYASG 121          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 8.570e-37
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1
Query:   46 VLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +LLLESGVRFHTTKF HTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSG ASNHVILELYASG
Sbjct:    1 MLLLESGVRFHTTKFTHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGKASNHVILELYASG 72          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.830e-34
Identity = 61/87 (70.11%), Postives = 76/87 (87.36%), Query Frame = 1
Query:    1 QTYLLKLASPGQEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +TYL KLA+PG EK VLLLESGVRFH+T +A  K+DMPSGFSMKLRKHIR +RLE++ Q+G+DRVVDF+FGSG   +H+ILE+YA+G
Sbjct:   36 KTYLFKLANPGTEKVVLLLESGVRFHSTSYARDKADMPSGFSMKLRKHIRAKRLENIAQLGIDRVVDFRFGSGTECHHIILEMYAAG 122          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A7S1UGR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.690e-33
Identity = 59/87 (67.82%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    1 QTYLLKLASPGQEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +TYLLKLA PG+++ VLLLESG RFH+T+F   KS MPSGF+MKLRKH+RT+RLED+RQ+G DRVV F FG G+++N +ILELYA G
Sbjct:   36 KTYLLKLAEPGRDREVLLLESGSRFHSTRFELDKSAMPSGFAMKLRKHLRTKRLEDLRQLGTDRVVVFTFGIGESTNCLILELYAQG 122          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A5J4XGE5_9CHLO (Nuclear export mediator factor NEMF-like isoform X1 (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XGE5_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 8.920e-33
Identity = 56/87 (64.37%), Postives = 74/87 (85.06%), Query Frame = 1
Query:    1 QTYLLKLASPGQ--EKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYA 255
            +TY+LKLA  G+  EKA L+LESG RFHTT++   KSD PS F++KLRKH+RT+RLED++Q+G+DR+VDF+FGSGDA  H+ILELY+
Sbjct:   36 KTYMLKLAKSGEDGEKAFLVLESGSRFHTTQYQKEKSDTPSNFTLKLRKHLRTRRLEDIKQLGVDRIVDFQFGSGDARYHLILELYS 122          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A8J9RKA8_9CHLO (Probable nuclear export mediator factor Nemf n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RKA8_9CHLO)

HSP 1 Score: 121 bits (304), Expect = 3.500e-30
Identity = 57/89 (64.04%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 QTYLLKLASPGQ--EKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +TY++KL+  G+  EKA+L+LESGVRFHTT++   K+D PS F++KLRKH+RT+RL+DVRQ+G+DRVVDF FG+GDA  H+ILELYA G
Sbjct:   36 KTYIIKLSKSGEDGEKALLVLESGVRFHTTQYMKEKADTPSNFTLKLRKHLRTRRLDDVRQLGVDRVVDFSFGTGDACYHLILELYAQG 124          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: I0YWY4_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YWY4_COCSC)

HSP 1 Score: 120 bits (301), Expect = 8.850e-30
Identity = 56/89 (62.92%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 QTYLLKLASPGQE--KAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +TY++KL+  G+E  KA+L+LESGVRFHTT++   K+D PS F++KLRKH+RT+RL+DVRQ+G+DRVVDF FG+G+A  H+ILELYA G
Sbjct:   36 KTYIIKLSKSGEEGEKALLVLESGVRFHTTRYLKDKADTPSNFTLKLRKHLRTRRLDDVRQLGVDRVVDFSFGTGEACYHLILELYAQG 124          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A388M4N2_CHABU (CCHC-type domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU)

HSP 1 Score: 120 bits (300), Expect = 1.220e-29
Identity = 58/94 (61.70%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 QTYLLKLASPG-------QEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +TY+LKLA  G        EK +LL+ESG+RFHTTKF+  KS  PSGF++KLRKHIRT+RLEDVRQ+G+DRVVDF+FG G+ ++H++LELY+ G
Sbjct:   35 KTYVLKLAKSGGVTDTGESEKELLLVESGIRFHTTKFSRDKSITPSGFTLKLRKHIRTRRLEDVRQLGIDRVVDFQFGLGEGTHHLLLELYSQG 128          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A7R9Y9B7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9B7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.220e-29
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   16 KLASPGQEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            KLA PG+++  L+LESGVRFH+ +F   K+ MPSGFSMKLRKH+RT+R ED+RQ+G DRVV   FG G++ NHVILE+Y+ G
Sbjct:    1 KLAEPGRDREFLVLESGVRFHSIRFELDKNPMPSGFSMKLRKHLRTKRFEDLRQLGTDRVVILSFGVGESRNHVILEMYSQG 82          
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Match: A0A1Y1IPU9_KLENI (NFACT-R_1 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IPU9_KLENI)

HSP 1 Score: 118 bits (295), Expect = 5.560e-29
Identity = 57/94 (60.64%), Postives = 75/94 (79.79%), Query Frame = 1
Query:    1 QTYLLKLASPG-------QEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIRTQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASG 261
            +TY++KLA  G        EK +LLLESGVR HTT+FA  KS+ PSG ++K+RKHIRT+RLED+RQ+G+DRV+DF+FG GD ++H+I ELYASG
Sbjct:   35 KTYVVKLARSGGVTGSGESEKELLLLESGVRLHTTQFARDKSNTPSGITLKIRKHIRTRRLEDIRQLGVDRVIDFQFGLGDQAHHLIFELYASG 128          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig979.22539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCK8_9STRA5.230e-3877.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LHP2_ECTSI8.570e-3795.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6U1AHC6_9STRA5.830e-3470.11Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1UGR3_9STRA1.690e-3367.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5J4XGE5_9CHLO8.920e-3364.37Nuclear export mediator factor NEMF-like isoform X... [more]
A0A8J9RKA8_9CHLO3.500e-3064.04Probable nuclear export mediator factor Nemf n=1 T... [more]
I0YWY4_COCSC8.850e-3062.92Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A388M4N2_CHABU1.220e-2961.70CCHC-type domain-containing protein n=1 Tax=Chara ... [more]
A0A7R9Y9B7_9STRA3.220e-2962.20Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1Y1IPU9_KLENI5.560e-2960.64NFACT-R_1 domain-containing protein n=1 Tax=Klebso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig979contigM-pyrifera_M_contig979:28653..29790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.924587-CDS-M-pyrifera_M_contig979:28652..287381622816895.924587-CDS-M-pyrifera_M_contig979:28652..28738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig979 28653..28738 +
1692278242.1092362-CDS-M-pyrifera_M_contig979:28652..287381692278242.1092362-CDS-M-pyrifera_M_contig979:28652..28738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig979 28653..28738 +
1622816895.941797-CDS-M-pyrifera_M_contig979:29609..297901622816895.941797-CDS-M-pyrifera_M_contig979:29609..29790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig979 29610..29790 +
1692278242.1310787-CDS-M-pyrifera_M_contig979:29609..297901692278242.1310787-CDS-M-pyrifera_M_contig979:29609..29790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig979 29610..29790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig979.22539.1prot_M-pyrifera_M_contig979.22539.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig979 28653..29790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig979.22539.1

>prot_M-pyrifera_M_contig979.22539.1 ID=prot_M-pyrifera_M_contig979.22539.1|Name=mRNA_M-pyrifera_M_contig979.22539.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
QTYLLKLASPGQEKAVLLLESGVRFHTTKFAHTKSDMPSGFSMKLRKHIR
TQRLEDVRQVGMDRVVDFKFGSGDASNHVILELYASGK*
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mRNA from alignment at M-pyrifera_M_contig979:28653..29790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig979.22539.1 ID=mRNA_M-pyrifera_M_contig979.22539.1|Name=mRNA_M-pyrifera_M_contig979.22539.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1138bp|location=Sequence derived from alignment at M-pyrifera_M_contig979:28653..29790+ (Macrocystis pyrifera P11B4 male)
CAGACGTACCTGCTGAAGCTGGCCAGCCCGGGGCAGGAGAAAGCGGTGCT GCTGTTGGAGTCAGGAGTGCGCTTTCACACCACCAAGTGAGACAAGAAAG AGAGAGAGGCAGACCGACAGAGCGGGAGAGAACAGCGCGACTCTACACAC GCACTACCGTATACATCCAATGCACCACAGCAATTCCGACTCGCTACCAC ACTGTATATAGAAGCGAGTCTGCATCATGAGAAGAAACAGGCTTAAAAAC GATGCGCACTATAGATGTGCAGAGGCCAGGCCTGCGTTTCACGAGGAGCT CACTTCGTCCACATATGTACGGCACGCGGTGGCTGATTTGCCCCACCCGC TGCCACCAGCGAGAGCCGCCGGAAGAAACTACAGCAGTACCGAGCAGGTT GCTGCCGGCGGCGAAAAATGTTTGTACTACGACCAGCGAGCAGCGCGGGG GTGTCGCCTCTTTCAAGCTAACCCCTCTGGAGGCTTCACAGCGATGATTT GTTTGGACGATATAGAAGTGACGATTACAGCAGCAACAACGGCCACTGCG TGGTTGGGGGATGCAGCAACGGCCACTGCGTGATTGGGGGATGCAGCAAC GGCCACTGCGTGATTGGGGGGTGGTACAATGGTTGGTGTGTCCGAGTTAC GGTGCAAAGAGGAGTCGCACGACACGGGCACAACATTATCCTACCGCTAC ACTACTGCTGGGCGCTCAGCTCCCCCTGCTCATAGACGGCTGGTAGCCTT TAAAGTTGCCAACCATTGTTTTGGTCGCTCTCTTGGGGTCGCGAAGGGCT GAGTTGACACTCCCTTCCCCCCCCCCCCCTCCGTCCCTCCCGGGGCGCGT TCACCCTCCTGCGGCGCCCCCTCCCCCCGCCCCCCCAACACCGACCGACA AGCCCACATGACGACCAATGCACCACCACACCGTGCTGCTGCGTTGTTCG TACGTAGGTTCGCGCACACGAAGTCAGATATGCCCTCCGGTTTCAGCATG AAGCTCCGGAAGCACATCCGTACGCAGAGGCTGGAGGACGTGAGGCAGGT CGGCATGGACAGGGTCGTGGACTTCAAGTTCGGCAGCGGGGACGCGTCCA ACCACGTCATCCTGGAGCTCTACGCCTCGGGTAAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig979:28653..29790+

>mRNA_M-pyrifera_M_contig979.22539.1 ID=mRNA_M-pyrifera_M_contig979.22539.1|Name=mRNA_M-pyrifera_M_contig979.22539.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig979:28653..29790+ (Macrocystis pyrifera P11B4 male)
CAGACGTACCTGCTGAAGCTGGCCAGCCCGGGGCAGGAGAAAGCGGTGCT
GCTGTTGGAGTCAGGAGTGCGCTTTCACACCACCAACAGACGTACCTGCT
GAAGCTGGCCAGCCCGGGGCAGGAGAAAGCGGTGCTGCTGTTGGAGTCAG
GAGTGCGCTTTCACACCACCAAGTTCGCGCACACGAAGTCAGATATGCCC
TCCGGTTTCAGCATGAAGCTCCGGAAGCACATCCGTACGCAGAGGCTGGA
GGACGTGAGGCAGGTCGGCATGGACAGGGTCGTGGACTTCAAGTTCGGCA
GCGGGGACGCGTCCAACCACGTCATCCTGGAGCTCTACGCCTCGGGTAAA
TGAGTTCGCGCACACGAAGTCAGATATGCCCTCCGGTTTCAGCATGAAGC
TCCGGAAGCACATCCGTACGCAGAGGCTGGAGGACGTGAGGCAGGTCGGC
ATGGACAGGGTCGTGGACTTCAAGTTCGGCAGCGGGGACGCGTCCAACCA
CGTCATCCTGGAGCTCTACGCCTCGGGTAAATGA
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