mRNA_M-pyrifera_M_contig97893.22532.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97893.22532.1
Unique NamemRNA_M-pyrifera_M_contig97893.22532.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Match: A0A7S4KVL7_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KVL7_9EUKA)

HSP 1 Score: 186 bits (471), Expect = 6.400e-54
Identity = 95/223 (42.60%), Postives = 136/223 (60.99%), Query Frame = 1
Query:    1 NMRTATLLIGCALVAFAVAQ---IPDGFSTFFQSATCPDGWEEAVDCKGRLLVSVTNPTDGGITVGDALADQEDRLHSHAYSATLDLPYKEISADDCCNSQGACAGTYTPTGNSSLAPSGLPFSQLIFCTIANATVSGGVPFGTIGYFLPTA--TTGSSCPSAWEPLDEAAGRILVPGYDDVGLISSDTAPLSSGEDRTHKHSFSCPITTDSVEYAGIAGCCN 654
            NM+   + IG A+V   +     IP G + +F+S TCPDGW+E    KGRL+VSV++   GG+TV DALA+ EDR HSH   + + L  K +SA  CCN  GAC GTY   G+++   SG+PF QL+ C+ +  + +  +P+GTI +F  T    + S  P  W+ ++   GR ++PGY   GL +S +A L+S EDR H+H F+  I  +  EYAGI GCC+
Sbjct:    3 NMK---VFIGLAVVFLFLGTTHGIPQGIAHWFRSTTCPDGWQEFASTKGRLIVSVSDGMLGGLTVNDALANLEDRTHSHEIESQVTLDTKSVSAIGCCNPDGACHGTYPLNGSTTNDASGMPFVQLVLCSFSGPSTTDPIPYGTIAFFDSTVGYDSCSDIPGNWQVIESVVGRSIIPGYS-TGLFTSTSAALTSQEDRPHQHVFTATINPNDQEYAGITGCCD 221          
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Match: A0A5A8E413_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E413_CAFRO)

HSP 1 Score: 141 bits (356), Expect = 1.010e-36
Identity = 84/224 (37.50%), Postives = 113/224 (50.45%), Query Frame = 1
Query:    4 MRTATLLIGCALVAFAVA----QIPDGFSTFFQSATCPDGWEEAVDCKGRLLVSVTNPTDGGITVGDALADQEDRLHSHAYSATLDLPYKEISADDCCNSQGACAGTYTPTGNSSLAPSGLPFSQLIFCTIANATVSGGVPFGTIGYFLPTATTGSSCPSAWEPLDEAAGRILVPGYDDVGLISSDTAPLSSGEDRTHKHSFS---CPITTDSVEYAGIAGCCN 654
            M+T T+ I  A    A       +P G + FF+   CPDGW       GR++VSVTN T GG T+  AL+DQE R HSH   A   L  K +S  D  +   A  G       ++ + +GL F QL  C    A  +  +P G   +F P      SCP+ ++PL +AAGRIL P +D + +  SD+ PL   EDR H H      C I T + ++ GI GCCN
Sbjct:    1 MQTLTVFIAAAGALLAATPSAGSVPAGTALFFEQG-CPDGWIREPLSAGRMIVSVTNGTRGGFTIHQALSDQEVRTHSHQSLAVTSLATKSVSGVDGSDHSAAAHGAQHGANATAASAAGLGFVQLPLCVAVTALPNATLPAGAAAFFGPDTF---SCPAGFDPLADAAGRILTPAHD-LQITKSDSLPLGDQEDRLHSHPTDNGRCAINTQATDFEGIGGCCN 219          
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Match: A0A6N7PYM4_9DELT (Uncharacterized protein n=1 Tax=Polyangium spumosum TaxID=889282 RepID=A0A6N7PYM4_9DELT)

HSP 1 Score: 93.6 bits (231), Expect = 1.940e-19
Identity = 64/201 (31.84%), Postives = 93/201 (46.27%), Query Frame = 1
Query:   61 IPDGFSTFFQSATCPDGWEEAVDCKGRLLVSVTNPTDGGITVGDALADQEDRLHSHAYSATLDLP-YKEISADDCCNSQGACAGTYTPTGNSSLAPSGLPFSQLIFCTIANATVSGGVPFGT-IGYFLPTATTGSSCPSAWEPLDEAAGRILV--PGYDDVGLISSDTAPLSSGEDRTHKHSFSCPITTDSVEYAGIAGCC 651
            +P G  +FF+   CP+GW+      GR +V+ +     G T+G+ LA QE+R HSHA SA++D+P    + A    N+    AG  T    S  A + +P+ QL+ C      V    P    +  F        SCP+ W+P +  AGR+LV  P Y           P +S   R H H+F+  + T S       GCC
Sbjct:   46 LPTGAVSFFKKLACPEGWKPYESAAGRTIVAASEALPSGQTLGEPLASQEERTHSHALSASVDVPSVSYVGAPGGGNAGVGKAGAVTFVAASEPASAEVPYVQLLACKKNAEPVPRVTPLPPRLLMFFEL----ESCPAGWKPAEGTAGRLLVGLPQYAPADRPFGGE-PFTSPALRAHGHAFTSTLETPSHGIGLAGGCC 241          
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Match: A0A4U1IY49_9DELT (Uncharacterized protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1IY49_9DELT)

HSP 1 Score: 91.7 bits (226), Expect = 9.850e-19
Identity = 63/206 (30.58%), Postives = 93/206 (45.15%), Query Frame = 1
Query:   61 IPDGFSTFFQSATCPDGWEEAVDCKGRLLVSVTNPTDGGITVGDALADQEDRLHSHAYSATLDLP-YKEISADDCCNSQGACAGTYTPTGNSSLAPSGLPFSQLIFCTIANATVSGGVPFGT-IGYFLPTATTGSSCPSAWEPLDEAAGRILVPGYDDVGLISSDTA-------PLSSGEDRTHKHSFSCPITTDSVEYAGIAGCC 651
            +P G  +FF+   CP+GW+      GR +V+ +     G  VG+ L+ QE+R HSHA  A++++P    + A    NS    AG  +    S  A +  P+ QL+ C     +V    P  + +  F         CP  W+P +  AGR+L      VGL     A       P +S E R+H H+FS  + T S       GCC
Sbjct:   44 LPTGAVSFFKKLACPEGWKPYEPAVGRTIVAASETLPSGEVVGEPLSSQEEREHSHALGASVEIPAVSYVGAPGGGNSGVGQAGAVSFATTSEPASADTPYVQLLACKKHEESVPRPTPLPSRMLMFFDL----EKCPEGWKPAEGTAGRLL------VGLPKDAPADQTFGGDPFTSPELRSHGHAFSSAVETPSHGIGLAGGCC 239          
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Match: A0A7S1LVI3_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1LVI3_NEODS)

HSP 1 Score: 82.0 bits (201), Expect = 2.920e-15
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  388 NAT-VSGGVPFGTIGYFLPTATTGSSCPSAWEPLDEAAGRILVPGYDDVGLISSDTAPLSSGEDRTHKHSFSCPITTDSVEYAGIAGCCN 654
            NAT VS G  FGT+ +F        +CP+ W       GR LVPG+   G +S++  PL SGEDR H H++    TTDSV +AG+AGCC+
Sbjct:    1 NATNVSTG--FGTVAHFTSDV---DACPTGWTAAAGYTGRFLVPGFGSGGAVSNEAPPLESGEDRAHSHNYDTTFTTDSVSFAGVAGCCD 85          
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Match: A0A6J4XB40_9DELT (Uncharacterized protein n=1 Tax=Olavius sp. associated proteobacterium Delta 1 TaxID=698986 RepID=A0A6J4XB40_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 9.080e-9
Identity = 49/161 (30.43%), Postives = 75/161 (46.58%), Query Frame = 1
Query:   64 PDGFSTFF-QSATCPDGWEEAVDCKGRLLVSVTNPTDGGITVGDALADQEDRL--HSHAYSATLDLPYKEISA-DDCCNSQGACAGTYTPTGNSSLAPSGLPFSQLIFC-TIANA-----TVSGGVPFGTIGYFLPTATTGSSCPSAWEPLDEAAGRILVP 516
            P G   FF Q+ TCP+GW+E  + KGR+++    P   G    DA    E +L  H H Y  +    +K+I+A     N      G+++ +G +  +   LP  QL  C + AN+     +V    P+ T+ +F        SCP  W P  +  GR +VP
Sbjct:   30 PSGMVAFFMQNDTCPNGWQEMEEAKGRMILGTITPALLG-EKSDAPVLVEGQLPKHDHDYKVSGSWGHKDINAAHGGGNKHATKKGSHSGSGTTEKSTWELPLMQLKVCQSKANSNSQKESVVDAFPYSTVAFF-----NRQSCPVGWVPFKDMDGRFVVP 184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97893.22532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4KVL7_9EUKA6.400e-5442.60Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A5A8E413_CAFRO1.010e-3637.50Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A6N7PYM4_9DELT1.940e-1931.84Uncharacterized protein n=1 Tax=Polyangium spumosu... [more]
A0A4U1IY49_9DELT9.850e-1930.58Uncharacterized protein n=1 Tax=Polyangium fumosum... [more]
A0A7S1LVI3_NEODS2.920e-1545.56Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A6J4XB40_9DELT9.080e-930.43Uncharacterized protein n=1 Tax=Olavius sp. associ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97893contigM-pyrifera_M_contig97893:52..705 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size654
Cds size651
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.548919-UTR-M-pyrifera_M_contig97893:51..541622816895.548919-UTR-M-pyrifera_M_contig97893:51..54Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97893 52..54 +
1692278241.8956816-UTR-M-pyrifera_M_contig97893:51..541692278241.8956816-UTR-M-pyrifera_M_contig97893:51..54Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig97893 52..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816895.5621645-CDS-M-pyrifera_M_contig97893:54..7051622816895.5621645-CDS-M-pyrifera_M_contig97893:54..705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97893 55..705 +
1692278241.9077792-CDS-M-pyrifera_M_contig97893:54..7051692278241.9077792-CDS-M-pyrifera_M_contig97893:54..705Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97893 55..705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97893.22532.1prot_M-pyrifera_M_contig97893.22532.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97893 55..705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97893.22532.1

>prot_M-pyrifera_M_contig97893.22532.1 ID=prot_M-pyrifera_M_contig97893.22532.1|Name=mRNA_M-pyrifera_M_contig97893.22532.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=217bp
MRTATLLIGCALVAFAVAQIPDGFSTFFQSATCPDGWEEAVDCKGRLLVS
VTNPTDGGITVGDALADQEDRLHSHAYSATLDLPYKEISADDCCNSQGAC
AGTYTPTGNSSLAPSGLPFSQLIFCTIANATVSGGVPFGTIGYFLPTATT
GSSCPSAWEPLDEAAGRILVPGYDDVGLISSDTAPLSSGEDRTHKHSFSC
PITTDSVEYAGIAGCCN
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mRNA from alignment at M-pyrifera_M_contig97893:52..705+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97893.22532.1 ID=mRNA_M-pyrifera_M_contig97893.22532.1|Name=mRNA_M-pyrifera_M_contig97893.22532.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig97893:52..705+ (Macrocystis pyrifera P11B4 male)
AACATGAGGACTGCGACACTCTTGATTGGCTGTGCGCTGGTGGCGTTTGC GGTTGCGCAGATTCCGGACGGCTTCAGCACATTCTTCCAGTCGGCGACGT GTCCTGATGGCTGGGAGGAGGCCGTGGACTGCAAGGGAAGGCTCTTGGTG AGCGTCACGAACCCCACTGACGGAGGCATCACAGTGGGAGATGCACTGGC GGACCAGGAGGACCGCCTCCACTCCCACGCTTACTCGGCCACGCTGGACC TCCCCTACAAAGAGATCAGCGCAGATGACTGCTGCAACAGCCAAGGAGCA TGTGCAGGCACATACACACCTACCGGAAACAGCAGTCTGGCCCCCAGTGG CCTCCCATTCTCGCAGTTGATCTTCTGCACCATTGCGAATGCCACCGTGA GTGGAGGAGTGCCGTTTGGAACCATTGGATACTTCCTGCCCACCGCCACG ACGGGGTCCTCTTGCCCTTCTGCATGGGAGCCCCTCGACGAGGCTGCTGG CCGCATTCTGGTGCCTGGCTACGACGACGTGGGGCTCATCTCCTCCGACA CTGCGCCGCTCTCTTCGGGAGAGGACCGCACCCACAAGCACTCCTTCTCC TGCCCCATCACCACAGACTCGGTGGAGTATGCTGGCATTGCAGGCTGCTG CAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97893:52..705+

>mRNA_M-pyrifera_M_contig97893.22532.1 ID=mRNA_M-pyrifera_M_contig97893.22532.1|Name=mRNA_M-pyrifera_M_contig97893.22532.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1302bp|location=Sequence derived from alignment at M-pyrifera_M_contig97893:52..705+ (Macrocystis pyrifera P11B4 male)
ATGAGGACTGCGACACTCTTGATTGGCTGTGCGCTGGTGGCGTTTGCGGT
TGCGCAGATTCCGGACGGCTTCAGCACATTCTTCCAGTCGGCGACGTGTC
CTGATGGCTGGGAGGAGGCCGTGGACTGCAAGGGAAGGCTCTTGGTGAGC
GTCACGAACCCCACTGACGGAGGCATCACAGTGGGAGATGCACTGGCGGA
CCAGGAGGACCGCCTCCACTCCCACGCTTACTCGGCCACGCTGGACCTCC
CCTACAAAGAGATCAGCGCAGATGACTGCTGCAACAGCCAAGGAGCATGT
GCAGGCACATACACACCTACCGGAAACAGCAGTCTGGCCCCCAGTGGCCT
CCCATTCTCGCAGTTGATCTTCTGCACCATTGCGAATGCCACCGTGAGTG
GAGGAGTGCCGTTTGGAACCATTGGATACTTCCTGCCCACCGCCACGACG
GGGTCCTCTTGCCCTTCTGCATGGGAGCCCCTCGACGAGGCTGCTGGCCG
CATTCTGGTGCCTGGCTACGACGACGTGGGGCTCATCTCCTCCGACACTG
CGCCGCTCTCTTCGGGAGAGGACCGCACCCACAAGCACTCCTTCTCCTGC
CCCATCACCACAGACTCGGTGGAGTATGCTGGCATTGCAGGCTGCTGCAA
CATGAGGACTGCGACACTCTTGATTGGCTGTGCGCTGGTGGCGTTTGCGG
TTGCGCAGATTCCGGACGGCTTCAGCACATTCTTCCAGTCGGCGACGTGT
CCTGATGGCTGGGAGGAGGCCGTGGACTGCAAGGGAAGGCTCTTGGTGAG
CGTCACGAACCCCACTGACGGAGGCATCACAGTGGGAGATGCACTGGCGG
ACCAGGAGGACCGCCTCCACTCCCACGCTTACTCGGCCACGCTGGACCTC
CCCTACAAAGAGATCAGCGCAGATGACTGCTGCAACAGCCAAGGAGCATG
TGCAGGCACATACACACCTACCGGAAACAGCAGTCTGGCCCCCAGTGGCC
TCCCATTCTCGCAGTTGATCTTCTGCACCATTGCGAATGCCACCGTGAGT
GGAGGAGTGCCGTTTGGAACCATTGGATACTTCCTGCCCACCGCCACGAC
GGGGTCCTCTTGCCCTTCTGCATGGGAGCCCCTCGACGAGGCTGCTGGCC
GCATTCTGGTGCCTGGCTACGACGACGTGGGGCTCATCTCCTCCGACACT
GCGCCGCTCTCTTCGGGAGAGGACCGCACCCACAAGCACTCCTTCTCCTG
CCCCATCACCACAGACTCGGTGGAGTATGCTGGCATTGCAGGCTGCTGCA
AC
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